SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene9027

Length: 2822 nt

UniGene Fasta

>sp_v3.0_unigene9027
CGTCGTGACCTTGGCTGTCACTCACTTTTTCTTCCCTAGAGATGCAAGATGCCGCATCCACTATGATTATTCGCATTATTAGTTTAATTTAGTGCCCAATTCTCTCAGATTCATCATCATGACTATCAATCTTGAAATTGCAACAGAGCTGGTCCTGGTTGCTTTTTAAGGGATACCCTTGCTTCTCTTCTCTTCAAACTTATCATCCTAGGTGAGGTCACTGCGCAGATTGAGGAGATGGCACACAAGCGAGATCACATATTGGTGCTCATTCTCATGACCATATCCACATTTACATTTATGATTCCTACTTGCCATGGCGGATCACATCATCCATTTGCGGCGACGGCGTCGTTGTTACGATTCTGGCGCCGCGTGTTGCCGAATGCGAGGCTCCCACCCTTCTTGTTGGAGAAGGCCTCCCCTCTGAACGCAACTTCAGTGGCCGTCTTTGGTGGCTACATTGCAAATCACACACTTTCCGACCACATTGCATCTTTTTGCACTGCTGCAGATCTCCTCTGCCCTCGAAGAATCGCGGAGGGCGGAGCTGTGAATGCTGTGACGGAGGACGTGGATTTCCAGAGTTATCATGGAAAAGACTTCAAACGCTACAAGGTCGGAGGCATTTCTGGCACCGACAGCTTCAGAAATTACTCAGACGGAGACAACGTGGTGAAGGGCGATTTCAAAGGATACGGGCGGGATGGCAATTTACAATCTGAAGTTTTTGCAAATTACGCTCCCCAAACCAATGTTGAAGACGAAGGTTTTACAACGTATGGTAGCGGAGGCAGTGCAGGCAGTAGCGATTTCTCTAGTTATGGATCGAATACCAACGTTCCCGATCACCATTTCAAGAACTATGGCACCGACAGTAACGCGGCCATTCAGGATTTCACCAGCTACGGCGACAACTCCAATGTCATACAGAATGACTTCGCCACCTACGGGAAGGACGCCAACGGCATTTTGACTGGCTTCACAAGCTATGCCCAAAGCTCCAATGTTATCACCAACAGTTTCAAAGGCTACAGTGAGAACGGCAACGGCCCCCTTGATCGATTTACTTCATATGCAGACAACGGCAACGTCCCCAGAAATGAGTTTGAAAGCTACGGCGCCAACGGAAATGGGGCCTTGCAAACCTTCACCAATTATGCAGACGGCGCCAATGTACCCCAAGATATTTTCAAGTCCTATGGGAAGGATGCCAATACTCCTCTTGTTACATTCAATAACTACGGGAATTCGTCAAACTCTCAGCAGGATGAATTCAAGCAATACGGAAAGGGTTCCAACAGTCCTCTCATGCAGTTCACCAGCTACGCCAAAAACACCCAATTCACGGAGTATGACAAGAACGGCACAGGCGCAACATTCTCATCCTACACTAACTCCACTACTTCCGCCTCCCCCGCCATCGGCGTGGAAGCGGGGAAGTTCTTCCGAGAGAATCTGCTGGTCCAAGGTTCGAGTCTCCCTTTGCCCAACCTGAAAGATTACATGCCCAGGAGATCATTCCTGCCTCGATCTCTGGCCGACAAGCTTCCCAGCTTCAGCAGCCAAAGCTTGGGAGAGCTGGGACGAATGTTCAGCATTCCAGAGAATTCGAGCATGGAGGGAATGATGGCGAAGACGCTAAAAGAATGTGAACGCCCGGCGGTGAAGGGGGAAATAAAGAAATGTGTGACATCGATAGAAGGAATGGCAGAATTTGCGGTGGGGATATTGGGGGCGAAGGTGGAGGTGCTGACCACAGCGAGCACGGCGGGATCTGGAGAGCGCGTCAAAGTCGGGGAAGTGAAGGGGAAAGATGGAGGGAGAGTGACGAGGTCGGTATCGTGCCATCAGAGTATGTTTCCGTATCTCGTCTATTATTGCCATTCAGTGCCCAAGGTGAAGGTGTATGAGGCTGCACTCATGCGCAACTCCACTTCTAAGGCCCAGAAAATAAACGATGGAGTGGCCATCTGCCATTTGGATACCACGGAGTGGAGTGCAGGGCATGCTGCATTCGTGGCGTTGGGACATAAGCCCGGCCAGATCGAGGTCTGCCACTGGATATTCGAAAACGATCTCATCTGGGTACCTCTACCCTGATGTGATCGTAACCATATTTGCTACCCTGCCATCTTACGAAATAAAGACGATGCACCGCATCTGTAAGCACCGTTCAATAAATAAATTATTTGGTCAAATGATGGCGAAGTAATTTTTTCTACTGTTGAGATGTATTTCTTCATCTTTTGGAATGAATGTCATCATCTCTTCCTTCCCCTTTAACTCGATAGGAATATATAATGCATTACGTGCCTCTTAGAACTAGATTGCAATCACCATAATGAACTGGAGATACGAGTACTTAACAATCGGCGGACTTACTATTGAATCTCCAGCTCATTCAGTGCCTTGTGTTGAGTGTTATCTCTGATGTGGTATCAGAGTGAGTCGTGATACCAACTGAATTGCTCTGTTGCTTCAGCTGCTGGCTCGGCGGGAAAAAGAGGTGTCCAAGAGGTTGTAAGAGATCCCCAGTGCCGTGAAGGAGCATTCTGCAAGGAGTCCTGTGCTGTGAGAGTGCCGTAATCGAAGCCTCCAACATCTGAATTCAGCTGTGAATGTAAGGGTTTGGCCGACCTGTGGGAGTTGAGATTAAGTTGCAATGCCCTTTCATCTTGTAATGTGTGCGAGACGCTGATTGACCTGTCCCTCACCGCTGAAAGGGCACGAAAATACTGAAAGCTAAACAGTTGCAGACAAAGAGATGAGATGAAAAGTTTGATTTTATTTTGGAGTTGTGGAGTGTCTCAACGATGAGA

Ace file of the UniGene sp_v3.0_unigene9027

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase-1 non-catalytic subunit beta, putative n=1 Tax=Ricinus communis RepID=B9SHB4_RICCO	-	-	0.0	43%
FL-Next	sp=Probable polygalacturonase non-catalytic subunit At1g60390; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	45%
Sma3	Polygalacturonase-1 non-catalytic subunit beta, putative	-	-	5.743e-09	-

Source	Gene names
Sma3	AROGP3; At1g23760; At1g60390; At1g70370; BURP12; BURP16; F17O7.9; F5O8.31; GP1; GP2; GP3; GSVIVT00002686001; GSVIVT00002688001; GSVIVT00016109001; JP630; JP650; LOC_Os08g29200; LOC_Os10g26940; Os08g0380100; Os10g0409400; OsI_15976; OsI_29064; OsJ_27135; O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BURP domain	IPR004873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60390.1	PG1 polygalacturonase 1 chr1:22247611-22249556 REVERSE LENGTH=624	0.0	45%
RefSeq	Arabidopsis thaliana	NP_176242.1	polygalacturonase 1 [Arabidopsis thaliana]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O80760

Fln msg:

Fln protein: MAHKRDHILVLILMTISTFTFMIPTCHGGSHHPFAATASLLRFWRRVLPNARLPPFLLEKASPLNATSVAVFGGYIANHTLSDHIASFCTAADLLCPRRIAEGGAVNAVTEDVDFQSYHGKDFKRYKVGGISGTDSFRNYSDGDNVVKGDFKGYGRDGNLQSEVFANYAPQTNVEDEGFTTYGSGGSAGSSDFSSYGSNTNVPDHHFKNYGTDSNAAIQDFTSYGDNSNVIQNDFATYGKDANGILTGFTSYAQSSNVITNSFKGYSENGNGPLDRFTSYADNGNVPRNEFESYGANGNGALQTFTNYADGANVPQDIFKSYGKDANTPLVTFNNYGNSSNSQQDEFKQYGKGSNSPLMQFTSYAKNTQFTEYDKNGTGATFSSYTNSTTSASPAIGVEAGKFFRENLLVQGSSLPLPNLKDYMPRRSFLPRSLADKLPSFSSQSLGELGRMFSIPENSSMEGMMAKTLKECERPAVKGEIKKCVTSIEGMAEFAVGILGAKVEVLTTASTAGSGERVKVGEVKGKDGGRVTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALMRNSTSKAQKINDGVAICHLDTTEWSAGHAAFVALGHKPGQIEVCHWIFENDLIWVPLP*

Protein Length: 623

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTCTTCCCTAGAGATGCAAGATGCCGCATCCACTATGATTATTCGCATTATTAGTTTAATTTAGTGCCCAATTCTCTCAGATTCATCATCATGACTATCAATCTTGAAATTGCAACAGAGCTGGTCCTGGTTGCTTTTTAAGGGATACCCTTGCTTCTCTTCTCTTCAAACTTATCATCCTAGGTGAGGTCACTGCGCAGATTGAGGAG_-_ATGGCACACAAGCGAGATCACATATTGGTGCTCATTCTCATGACCATATCCACATTTACATTTATGATTCCTACTTGCCATGGCGGATCACATCATCCATTTGCGGCGACGGCGTCGTTGTTACGATTCTGGCGCCGCGTGTTGCCGAATGCGAGGCTCCCACCCTTCTTGTTGGAGAAGGCCTCCCCTCTGAACGCAACTTCAGTGGCCGTCTTTGGTGGCTACATTGCAAATCACACACTTTCCGACCACATTGCATCTTTTTGCACTGCTGCAGATCTCCTCTGCCCTCGAAGAATCGCGGAGGGCGGAGCTGTGAATGCTGTGACGGAGGACGTGGATTTCCAGAGTTATCATGGAAAAGACTTCAAACGCTACAAGGTCGGAGGCATTTCTGGCACCGACAGCTTCAGAAATTACTCAGACGGAGACAACGTGGTGAAGGGCGATTTCAAAGGATACGGGCGGGATGGCAATTTACAATCTGAAGTTTTTGCAAATTACGCTCCCCAAACCAATGTTGAAGACGAAGGTTTTACAACGTATGGTAGCGGAGGCAGTGCAGGCAGTAGCGATTTCTCTAGTTATGGATCGAATACCAACGTTCCCGATCACCATTTCAAGAACTATGGCACCGACAGTAACGCGGCCATTCAGGATTTCACCAGCTACGGCGACAACTCCAATGTCATACAGAATGACTTCGCCACCTACGGGAAGGACGCCAACGGCATTTTGACTGGCTTCACAAGCTATGCCCAAAGCTCCAATGTTATCACCAACAGTTTCAAAGGCTACAGTGAGAACGGCAACGGCCCCCTTGATCGATTTACTTCATATGCAGACAACGGCAACGTCCCCAGAAATGAGTTTGAAAGCTACGGCGCCAACGGAAATGGGGCCTTGCAAACCTTCACCAATTATGCAGACGGCGCCAATGTACCCCAAGATATTTTCAAGTCCTATGGGAAGGATGCCAATACTCCTCTTGTTACATTCAATAACTACGGGAATTCGTCAAACTCTCAGCAGGATGAATTCAAGCAATACGGAAAGGGTTCCAACAGTCCTCTCATGCAGTTCACCAGCTACGCCAAAAACACCCAATTCACGGAGTATGACAAGAACGGCACAGGCGCAACATTCTCATCCTACACTAACTCCACTACTTCCGCCTCCCCCGCCATCGGCGTGGAAGCGGGGAAGTTCTTCCGAGAGAATCTGCTGGTCCAAGGTTCGAGTCTCCCTTTGCCCAACCTGAAAGATTACATGCCCAGGAGATCATTCCTGCCTCGATCTCTGGCCGACAAGCTTCCCAGCTTCAGCAGCCAAAGCTTGGGAGAGCTGGGACGAATGTTCAGCATTCCAGAGAATTCGAGCATGGAGGGAATGATGGCGAAGACGCTAAAAGAATGTGAACGCCCGGCGGTGAAGGGGGAAATAAAGAAATGTGTGACATCGATAGAAGGAATGGCAGAATTTGCGGTGGGGATATTGGGGGCGAAGGTGGAGGTGCTGACCACAGCGAGCACGGCGGGATCTGGAGAGCGCGTCAAAGTCGGGGAAGTGAAGGGGAAAGATGGAGGGAGAGTGACGAGGTCGGTATCGTGCCATCAGAGTATGTTTCCGTATCTCGTCTATTATTGCCATTCAGTGCCCAAGGTGAAGGTGTATGAGGCTGCACTCATGCGCAACTCCACTTCTAAGGCCCAGAAAATAAACGATGGAGTGGCCATCTGCCATTTGGATACCACGGAGTGGAGTGCAGGGCATGCTGCATTCGTGGCGTTGGGACATAAGCCCGGCCAGATCGAGGTCTGCCACTGGATATTCGAAAACGATCTCATCTGGGTACCTCTACCCTGA___TGTGATCGTAACCATATTTGCTACCCTGCCATCTTACGAAATAAAGACGATGCACCGCATCTGTAAGCACCGTTCAATAAATAAATTATTTGGTCAAATGATGGCGAAGTAATTTTTTCTACTGTTGAGATGTATTTCTTCATCTTTTGGAATGAATGTCATCATCTCTTCCTTCCCCTTTAACTCGATAGGAATATATAATGCATTACGTGCCTCTTAGAACTAGATTGCAATCACCATAATGAACTGGAGATACGAGTACTTAACAATCGGCGGACTTACTATTGAATCTCCAGCTCATTCAGTGCCTTGTGTTGAGTGTTATCTCTGATGTGGTATCAGAGTGAGTCGTGATACCAACTGAATTGCTCTGTTGCTTCAGCTGCTGGCTCGGCGGGAAAAAGAGGTGTCCAAGAGGTTGTAAGAGATCCCCAGTGCCGTGAAGGAGCATTCTGCAAGGAGTCCTGTGCTGTGAGAGTGCCGTAATCGAAGCCTCCAACATCTGAATTCAGCTGTGAATGTAAGGGTTTGGCCGACCTGTGGGAGTTGAGATTAAGTTGCAATGCCCTTTCATCTTGTAATGTGTGCGAGACGCTGATTGACCTGTCCCTCACCGCTGAAAGGGCACGAAAATACTGAAAGCTAAACAGTTGCAGACAAAGAGATGAGATGAAAAGTTTGATTTTATTTTGGAGTTGTGGAGTGTCTCAACGATGAGA

Fln Alignment:

Contig9027___SHHPFAATASLLRFWRR-VLPNARLPPFLLEKASPLNATSVAVFGGYIANHTLSDHIASFCTAADLLCPRRIAEGGAVNAVTEDVDFQSYHGKDFKRYKVGGISGTDSFRNYSDGDNVVKGDFKGYGRDGNLQSEVFANYAPQTNVEDEXXXXXXXXXXXXXXXXXXXXXNTNVPDHHFKNYGTDSNAAIQDFTSYGDNSNVIQNDFATYGKDANGILTGFTSYAQSSNVITNSFKGYSENGNGPLDRFTSYADNGNVPRNEFESYGANGNGALQTFTNYADGANVPQDIFKSYGKDANTPLVTFNNYGNSSNSQQDEFKQYGKGSNSPLMQFTSYAKNTQFTEYDKNGTGATFSSYTNSTTSASPAIG--VEAGKFFRENLLVQGSSLPLPNLKDYMPRRSFLPRSLADKLPSFSSQSLGELGRMFSIPENSSMEGMMAKTLKECERPAVKGEIKKCVTSIEGMAEFAVGILGAKVEVLTTASTAXXXXXXXXXXXXXXXXXXXTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALMRNSTSKAQKINDGVAICHLDTTEWSAGHAAFVALGHKPGQIEVCHWIFENDLIW
O80760______________SENPFTPKASLIRYWNNHINGDSPKPSFFLSKASPLTAVDSTRFASLASNHALNTHHSDFCSAAKLFCFPELA-AHSLEKHGDDVNFAAYSGKNFTNYGSDRLSGADSFKNYSGGDNIAVDSFRRYSRNSAGHDDGFTNYAGEVNVADQSFTTYATGTTGGSGEFTNYNTDANEPNGRFTSYSDKANGRSQTFTTYSENGNTGYQSFTSYSKNGNGAPNEFSGYGTGSNVVNTGFTKYGESANGANDSFTSYGENGNVPVNEFKGYGDGGNGAVYGFKNYRDQSNIGVDSFSSYAKNSNNEKVNFVNYGKSFNLGSDNFTGYGQDNVGGNVSFKTYGQGQSFKVYTKD--GVVFARYSNNVSSNGKTVNKWVEEGKFFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLP-FSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLL--DPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
202	66		33		0.997452
209	33	66			0.997452
211	66			33	0.997452
213		33	66		1.0
217	66			33	0.997452
219	33		66		0.997452
220		66		33	0.997452
222	66			33	0.997452
223	66	33			0.997452
224		33		66	1.0
225		33	66		1.0
226	33	66			0.997452
227		33	66		1.0
228	66	33			0.997452
264		33		66	0.997452
592	75			25	0.996473
904	10	90			0.90298
935	11		88		0.923564
996	12		87		0.992554
998	12	87			0.992554
999		87		12	0.992554
1000	87			12	0.992554
1237			14	85	0.993533
1238		85	14		0.993533
1239	85		14		0.993533
1240	85	14			0.993533
1244		85	14		0.993533
1246	85			14	0.993533
1254	14			85	0.993533
1256	14		85		0.993533
1258		85		14	0.993533
1351		87		12	0.992554
1400		87		12	0.992554
1427		87		12	0.992554
1438		85	14		0.993533
1466	12		87		0.992554
1700	30		70		1.0
1925	34	65			1.0
1943		43		53	1.0
2095		90		9	1.0
2119	92			7	0.999999
2136	76		23		1.0
2218	83	16			0.994512
2224	25			75	0.996473
2392			33	66	0.997452
2486		66	33		0.997452
2513		33	66		0.997452
2755	50			50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain