SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8948

Length: 2698 nt

UniGene Fasta

>sp_v3.0_unigene8948
CAGCAGCAGCAGCAGGAAATTTAATTTAAAAATCCGATTCATCACTACTAGATGAGGGGTACTGGTATTGATTTAAGGAAGTTGGGATCCTTCAGTTACAGAAGGATCTTTAATAGAATTCGAACGATGACTATCAACAACTTGTTGCTGGTTATCACGTTACTTGTAACGCTGCTGGGCTGCAGGATCAATGGTGATGATGAGCAGGTTTACATTGTTTACATGGGCAGCTCCCGTGGCGGGGAAAGGGATTTCATAGTTAGTAGCCATGTGGAATTACTTTCCTCTGTGCTAGGAAGTGACCAGGATGCACATTTATCGCTCGTTTATAGCTATAGCCATGCTTTCACAGGCTTCTCTGCAGTTATGTCCAAGGACCAAGCAACTGCTATTTCTGGAAAAGCTGGGGTCGTATCAGTTTTCCCTGATCCATTGCTCCAGCTGCACACCACGCGTTCCTGGGACTTCCTGCAAACTGAATCTGGCTTGGCGACACCTTCTTATACTGCTACTGGGGACTCCATAATTGGCATGATTGATACAGGCGTTTGGCCTGACTCGCCAAGTTTCAACGATGCCGGGATTGGTCCAGTTCCTTCTCGGTGGAAAGGAGTATGCACTGCAGGACAGGATTTCAAGTGCAATAGAAAAATAATCGGCGCACGCTATTACAAAGGAAATGGCGGTTCAGGAACAGGGACGGATAAGGCACGGAGGGAGCAGCCATTGTCAGCGAGAGACAGCCAGGGGCATGGAACACACACAGCCTCAACTGCAGCAGGCAGTGTCGTCCCGGATGCCGATTATTACGGGCTTGCCAAAGGATCTGCAAGAGGAGGATTTCCCACTGCCAGAATCGCAGTCTATAAAGTCTGCTCTGATCAGGGTTGTCTTGGATCCGACATTCTAGCGGGACTGGACGATGCTGTGAAGGATGGGGTGGATATAATATCCATGTCACTTGGAACCGCTTCAGTCTTCCAATTGGATTTCCTCACCGACCCAATTTCGATAGGATCGTTTCACGCGGCCCAGAACGGAATACTGGTGGTATGTTCGGCAGGTAACGATGGTCCCGACGCAAATACAGTAGTGAACACCGCTCCCTGGATTTTCACGGTCGCTGCAACAACGATTGACAGAGACTTCGAATCAGACATAATTTTGGGAAATGGGAAAATATTCAAGGGTGAAGCCATAAATTTTTCAAATCTTAGCCGTACGGAGATGTATCCCCTTGTCAACGCACGAGACATCGCTTCAAATGGCAGCAGCACGGATGATGCAAGTAATTGTTATCCTGGATCTCTGGATCCGGAAAAGGCAAGAGGAAAGATTGTGGTATGTTCAAGCAGCGACACTTCCATTTCTAGACGAATGAGAAAAGCTACAGTCCAGGGCGCAGAAGGCAGAGGGATGGTTCTGGTCGACAACATGGGAAAATCTGTATCCTCCAACTATGGTTCATTTCCCTTAACTACAGTCAGCGATCAAGATGGATCGGAGATTTTCTCTTATATAAAATCTCAAAGTGCCCCTGTAGCGACAATTCTCAGGACTGTGGCAGTTCCGAATTACAAGCCCGCCCCAGTTGTTCCCTATTTCTCGTCGAGGGGTCCCGGCGTGTTCACTGAAAGCATCCTCAAGCCGGATATAACCGCGCCGGGGGTGAACATACTCGCAGCTTGGATACCGACTAACCAGTCTTCGGATATTCCGGCCGGGGAAAAGCCTTCGTACTATGCATTGGTGTCTGGAACATCCATGGCTGCTCCTCATGTGAGCGGGACAGCCGCACTCTTGAAAGCTGTCAATCCCACATGGAGCGCCGCTGCCATTAGGTCGGCACTCATCACCACTGCCACTTCCATGAACAATGTCGGCAACCCAGTGACAAACGATTCCAACATAGGCGCTTGCCCTTTTGACATAGGAGCCGGGGAAGTGAGCCCTGTGAGAGCACTAAATCCGGGCCTCGTTTACGACACAACCGTGGACGACTACCTGCTGTTTCTCTGCAACTTGGGATTCAAAGCATCACAGATCGCTTCCGTGTCGGGTAACCAGGCCTTCAACTGCTCGTCGGAGGCTAGCGAGGAGATGATCAGCGACATGAACTATCCAACCATCGCCATCTCGGGCTTGAAGTCCACCAGATCTGTCAAGAGGACACTGACAAACATAGGATCCGCCTCTGGATCCGTCTACAAAGTAACCGTAGATTCGCCCCAGGAATTAGATGTTAAAGTGTCGCCGAGCCAGCTCGCTTTCTCGGGGACTTCTGACAAGATAACATACAGCGTGATGTTTACGGCTAGCGGAAAGGCCAGCAAGGGATACGCGTTTGGGTCCATCACTTGGGCGGATGGAACCCACAACGTCCGGACGCCTTTCGCCGTTAACATATTGTAACAGGTGATGAAGACGGGAGCAAGTGAACATCGGTTTCCATGGAATCAGTGGCCGCCCCATTTCCACCGGGTGGCCCCTATGCACGGGTCCTCCGTGTATTCTTTGCTTTCCCATCTTCGATTTGTTTGTTTTTGCTTTGCTCTGCTGGAATATAATAATCTCCAGCTCTTCTAAACATTATCAAAAGTCTATCAAGTATGGATATAAATTACAGCTTTCTCGTCCACTACTGAAATTTGTATCATTTTATCTCCACAATGCATTGAACCATTCGTATCAATATGCC

Ace file of the UniGene sp_v3.0_unigene8948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	subtilisin-like protein [Picea abies]	-	-	0.0	52%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	53%
Sma3	Xylem serine proteinase 1, putative	-	-	4.353e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	3.183e-33	-

Source	Gene names
Sma3	AIR3; ARA12; ASP48; AT4g34980; At1g20160; At2g04160; At3g14067; At3g14240; At4g34980; At5g59090; At5g67360; GSVIVT00000484001; GSVIVT00000486001; GSVIVT00001075001; GSVIVT00004225001; GSVIVT00005977001; GSVIVT00007214001; GSVIVT00007221001; GSVIVT00011402

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	GMP synthase (glutamine-hydrolyzing) activity	GO:0003922	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	GMP biosynthetic process	GO:0006177	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3		IPR000991	-	-
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	GMP synthase, C-terminal	IPR001674	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	GMP synthase, N-terminal	IPR004739	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3		IPR011702	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3		IPR018318	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20160.1	ATSBT5.2 Subtilisin-like serine endopeptidase family protein chr1:6990852-6993854 REVERSE LENGTH=769	47%
RefSeq	Arabidopsis thaliana	NP_564107.1	Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002303965.1	predicted protein, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg:

Fln protein: MRGTGIDLRKLGSFSYRRIFNRIRTMTINNLLLVITLLVTLLGCRINGDDEQVYIVYMGSSRGGERDFIVSSHVELLSSVLGSDQDAHLSLVYSYSHAFTGFSAVMSKDQATAISGKAGVVSVFPDPLLQLHTTRSWDFLQTESGLATPSYTATGDSIIGMIDTGVWPDSPSFNDAGIGPVPSRWKGVCTAGQDFKCNRKIIGARYYKGNGGSGTGTDKARREQPLSARDSQGHGTHTASTAAGSVVPDADYYGLAKGSARGGFPTARIAVYKVCSDQGCLGSDILAGLDDAVKDGVDIISMSLGTASVFQLDFLTDPISIGSFHAAQNGILVVCSAGNDGPDANTVVNTAPWIFTVAATTIDRDFESDIILGNGKIFKGEAINFSNLSRTEMYPLVNARDIASNGSSTDDASNCYPGSLDPEKARGKIVVCSSSDTSISRRMRKATVQGAEGRGMVLVDNMGKSVSSNYGSFPLTTVSDQDGSEIFSYIKSQSAPVATILRTVAVPNYKPAPVVPYFSSRGPGVFTESILKPDITAPGVNILAAWIPTNQSSDIPAGEKPSYYALVSGTSMAAPHVSGTAALLKAVNPTWSAAAIRSALITTATSMNNVGNPVTNDSNIGACPFDIGAGEVSPVRALNPGLVYDTTVDDYLLFLCNLGFKASQIASVSGNQAFNCSSEASEEMISDMNYPTIAISGLKSTRSVKRTLTNIGSASGSVYKVTVDSPQELDVKVSPSQLAFSGTSDKITYSVMFTASGKASKGYAFGSITWADGTHNVRTPFAVNIL*

Protein Length: 788

Fln nts: CAGCAGCAGCAGCAGGAAATTTAATTTAAAAATCCGATTCATCACTACTAG_-_ATGAGGGGTACTGGTATTGATTTAAGGAAGTTGGGATCCTTCAGTTACAGAAGGATCTTTAATAGAATTCGAACGATGACTATCAACAACTTGTTGCTGGTTATCACGTTACTTGTAACGCTGCTGGGCTGCAGGATCAATGGTGATGATGAGCAGGTTTACATTGTTTACATGGGCAGCTCCCGTGGCGGGGAAAGGGATTTCATAGTTAGTAGCCATGTGGAATTACTTTCCTCTGTGCTAGGAAGTGACCAGGATGCACATTTATCGCTCGTTTATAGCTATAGCCATGCTTTCACAGGCTTCTCTGCAGTTATGTCCAAGGACCAAGCAACTGCTATTTCTGGAAAAGCTGGGGTCGTATCAGTTTTCCCTGATCCATTGCTCCAGCTGCACACCACGCGTTCCTGGGACTTCCTGCAAACTGAATCTGGCTTGGCGACACCTTCTTATACTGCTACTGGGGACTCCATAATTGGCATGATTGATACAGGCGTTTGGCCTGACTCGCCAAGTTTCAACGATGCCGGGATTGGTCCAGTTCCTTCTCGGTGGAAAGGAGTATGCACTGCAGGACAGGATTTCAAGTGCAATAGAAAAATAATCGGCGCACGCTATTACAAAGGAAATGGCGGTTCAGGAACAGGGACGGATAAGGCACGGAGGGAGCAGCCATTGTCAGCGAGAGACAGCCAGGGGCATGGAACACACACAGCCTCAACTGCAGCAGGCAGTGTCGTCCCGGATGCCGATTATTACGGGCTTGCCAAAGGATCTGCAAGAGGAGGATTTCCCACTGCCAGAATCGCAGTCTATAAAGTCTGCTCTGATCAGGGTTGTCTTGGATCCGACATTCTAGCGGGACTGGACGATGCTGTGAAGGATGGGGTGGATATAATATCCATGTCACTTGGAACCGCTTCAGTCTTCCAATTGGATTTCCTCACCGACCCAATTTCGATAGGATCGTTTCACGCGGCCCAGAACGGAATACTGGTGGTATGTTCGGCAGGTAACGATGGTCCCGACGCAAATACAGTAGTGAACACCGCTCCCTGGATTTTCACGGTCGCTGCAACAACGATTGACAGAGACTTCGAATCAGACATAATTTTGGGAAATGGGAAAATATTCAAGGGTGAAGCCATAAATTTTTCAAATCTTAGCCGTACGGAGATGTATCCCCTTGTCAACGCACGAGACATCGCTTCAAATGGCAGCAGCACGGATGATGCAAGTAATTGTTATCCTGGATCTCTGGATCCGGAAAAGGCAAGAGGAAAGATTGTGGTATGTTCAAGCAGCGACACTTCCATTTCTAGACGAATGAGAAAAGCTACAGTCCAGGGCGCAGAAGGCAGAGGGATGGTTCTGGTCGACAACATGGGAAAATCTGTATCCTCCAACTATGGTTCATTTCCCTTAACTACAGTCAGCGATCAAGATGGATCGGAGATTTTCTCTTATATAAAATCTCAAAGTGCCCCTGTAGCGACAATTCTCAGGACTGTGGCAGTTCCGAATTACAAGCCCGCCCCAGTTGTTCCCTATTTCTCGTCGAGGGGTCCCGGCGTGTTCACTGAAAGCATCCTCAAGCCGGATATAACCGCGCCGGGGGTGAACATACTCGCAGCTTGGATACCGACTAACCAGTCTTCGGATATTCCGGCCGGGGAAAAGCCTTCGTACTATGCATTGGTGTCTGGAACATCCATGGCTGCTCCTCATGTGAGCGGGACAGCCGCACTCTTGAAAGCTGTCAATCCCACATGGAGCGCCGCTGCCATTAGGTCGGCACTCATCACCACTGCCACTTCCATGAACAATGTCGGCAACCCAGTGACAAACGATTCCAACATAGGCGCTTGCCCTTTTGACATAGGAGCCGGGGAAGTGAGCCCTGTGAGAGCACTAAATCCGGGCCTCGTTTACGACACAACCGTGGACGACTACCTGCTGTTTCTCTGCAACTTGGGATTCAAAGCATCACAGATCGCTTCCGTGTCGGGTAACCAGGCCTTCAACTGCTCGTCGGAGGCTAGCGAGGAGATGATCAGCGACATGAACTATCCAACCATCGCCATCTCGGGCTTGAAGTCCACCAGATCTGTCAAGAGGACACTGACAAACATAGGATCCGCCTCTGGATCCGTCTACAAAGTAACCGTAGATTCGCCCCAGGAATTAGATGTTAAAGTGTCGCCGAGCCAGCTCGCTTTCTCGGGGACTTCTGACAAGATAACATACAGCGTGATGTTTACGGCTAGCGGAAAGGCCAGCAAGGGATACGCGTTTGGGTCCATCACTTGGGCGGATGGAACCCACAACGTCCGGACGCCTTTCGCCGTTAACATATTGTAA___CAGGTGATGAAGACGGGAGCAAGTGAACATCGGTTTCCATGGAATCAGTGGCCGCCCCATTTCCACCGGGTGGCCCCTATGCACGGGTCCTCCGTGTATTCTTTGCTTTCCCATCTTCGATTTGTTTGTTTTTGCTTTGCTCTGCTGGAATATAATAATCTCCAGCTCTTCTAAACATTATCAAAAGTCTATCAAGTATGGATATAAATTACAGCTTTCTCGTCCACTACTGAAATTTGTATCATTTTATCTCCACAATGCATTGAACCATTCGTATCAATATGCC

Fln Alignment:

Contig8948___DDEQVYIVYMGSSRGGERDFIXXXXXXXXXXXXXXDQDAHLSLVYSYSHAFTGFSAVMSKDQATAISGKAGVVSVFPDPLLQLHTTRSWDFLQTESGLATPSY----TATGDSIIGMIDTGVWPDSPSFNDAGIGPVPSRWKGVCTAGQDFK---CNRKIIGARYYKGNGGSGTGTDKARREQPLS-------ARDSQGHGTHTASTAAGSVVPDADYYGLAKGSARGGFPTA--RIAVYKVCS-DQGCLGSDILAGLDDAVKDGVDIISMSLGTASVFQLDFLTDPISIGSFHAAQNGILVVCSAGNDGPDANTVVNTAPWIFTVAATTIDRDFESDIILGNGKIFKGEAINFSNLSRTEMYPLVNARDIASNGSSTDDASNCYPGSLDPEKARGKIVVCSSSDTSISRRMRKATVQGAEGRGMVLVDNMGKSVSSNYGSFPLTTVSDQDGSEIFSYIKSQSAPVATILRTVAVPNYKPAPVVPYFSSRGPGVFTESILKPDITAPGVNILAAWIPTNQSSD--IPAGEKPSYYALVSGTSMAAPHVSGTAALLKAVNPTWSAAAIRSALITTATSMNNVGNPVTNDSNIGACPFDIGAGEVSPVRALNPGLVYDTTVDDYLLFLCNLGFKASQIASVSGNQAFNCSSEASEEMISDMNYPTIAIS--GLKS-TRSVKRTLTNIGSASGSVYKVTVDSPQELDVKVSPSQLAFSGTSDKITYSVMFTASGKASKGYAFGSITWADGTHNVRTPFAVNIL
Q40764______________EDGKVHIVYMGSLSHNNREDLVTSHLEVLSSVLESPRHAKQSLVRSYTYAFNGFAAVLSKEQATTLVGKPGVLSVFPDTVLNLHTTHSWDYLEKDLSMPGFSYRKPKSSGTDIILGFLDTGIWPEAASFSDKGMGPVPSRWKGACVKGENFNVSNCNRKIIGARYYSG----GEDDDLKKNSKPKSIWPESRTARDYQGHGTYTAATAAGSFVDNANYNGLANGTARGGSASSSTRIAMYRVCGLDYGCPGVQILAAFDDAVKDGVDIVSISIGVRSSNQADFVKDAIAIGAFHATQKGILVVSSAGNEGPDSQTVVNAAPWIFTVGATSIDREFLSNVVLGNGKIIKGKGITMSNLSHSAVHPLVYAGSIPDKSSYPVAASNCLLDSLDASKAKGNVVVCIANDTAASRYIMKLAVQDAGGIGMVVVEDIQIFEAFDYGTFPATAVSKTSATEIFSYIKSNRNPVATITLTEVVTNYIPAPVIASFSSRGPGGLTQNILKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTFNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGKLLTNESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIAISKLGIKNGSTTISRSVTNFVPEQAPTYKVTIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNVATKGYAFGTLVWSDGKHNVRSPFAVNMV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
97	16			83	0.994512
99	83		16		0.994512
100		83	16		0.994512
101	83		16		0.994512
287		33		66	0.997452
434		25		75	0.996473
527	25	75			0.996473
617		14		85	0.993533
744			66	33	0.997452
745		66		33	0.997452
814		25	75		0.996473
816	25			75	0.996473
817		25		75	0.996473
819	25	75			0.996473
821	75			25	0.996473
1659		88		11	0.923564
1660		88		11	0.923564
1756		66		33	0.997452
1769	25		75		0.996473
1917		87		12	0.992554
2555	9	90			1.0
2591	11			88	1.0
2593	82		17		1.0
2690		14		85	0.993533
2691	16	16			0.988813
2693	50	25	25		0.995533
2694	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1	15	CAG CAG CAG CAG CAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain