SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8936

Length: 924 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8936

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone-lysine N-methyltransferase ATXR6 [Arabidopsis thaliana] sp\|Q9FNE9.1\|ATXR6_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR6; AltName: Full=Protein SET DOMAIN GROUP 34; AltName: Full=Trithorax-related protein 6; Short=TRX-related protein	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Histone-lysine N-methyltransferase ATXR6, putative	-	-	6.584e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	3.23e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		3.23e-11	%

Source	Gene names
Sma3	17I14.20; ATXR5; ATXR6; At5g09790; At5g24330; GSVIVT00034847001; GSVIVT00037225001; MOP9.18; MTH16.26; Os01g0965500; OsI_05333; OsI_05649; OsJ_04877; OsJ_05181; P0458E05.18; P0575F10.5; PHYPADRAFT_194183; PHYPADRAFT_227225; POPTRDRAFT_250856; POPTRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	anther dehiscence	GO:0009901	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G24330.1	ATXR6, SDG34 ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 chr5:8295245-8296997 REVERSE LENGTH=349	59%
RefSeq	Arabidopsis thaliana	NP_197821.1	histone-lysine N-methyltransferase ATXR6 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002318442.1	SET domain protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8S0

Fln msg: Overlapping hits, possible frame ERROR between 410 and 403, Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 258 - 345

Fln protein: MKMAAEQTMSRSNRLRKRTQAPRRLDQQSSFSKHCTRVDTSNIVCEECGLGDCENEMLLCDKCDRGYHMYCLRPIVARVPAGNWxxxxNCKADPIKEFPLVQTKIVDFFRIQRSSQAAHTSLLESRKRKKRSTSLIVSKKKRRLLPFTPSKDQARRLQQMGSLATALTTSVVEFSDKLTYMPGMAPRSANRPALEKGGMQIMSREDKTSLELCQAMCRAGEWPPLLVVFDSCEGFTVEADGCIKDLTIITEYVGDVD*

Protein Length: 259

Fln nts: CGTCGTGACCGTCGTGACATTGGGAATCTGTTCGGCTCCTCTACTGGCCGCACCAAACCTCTGCTCCTTCTGTATGGCTTTGTGACTGGTAATGTTTCAATGTTTTCTGCTCCATATTGATTAAGCGGGGGTTGAAGCAGAAGAGTAAG_-_ATGAAGATGGCAGCGGAACAAACCATGAGTCGGAGTAATCGTCTCAGAAAGCGCACCCAAGCCCCTAGGCGGCTGGATCAACAGTCTTCCTTCTCCAAACATTGTACCAGAGTTGATACGAGCAATATAGTCTGTGAAGAATGTGGATTGGGCGATTGTGAAAATGAAATGCTGCTCTGCGACAAATGTGACAGAGGTTACCACATGTATTGCCTTCGCCCTATTGTTGCTAGAGTTCCTGCAGGAAACTGGxxxxxxxxxxxxAATTGTAAGGCCGATCCCATCAAAGAATTCCCTCTTGTGCAGACCAAAATTGTCGACTTCTTTCGCATTCAGAGGTCTTCCCAAGCAGCACACACATCCCTCCTTGAGTCGAGAAAAAGGAAAAAGCGTTCTACAAGTCTGATTGTTTCGAAGAAAAAGAGACGGCTATTGCCCTTCACACCGAGCAAGGATCAGGCTAGAAGGCTCCAACAAATGGGTTCTCTAGCCACGGCCCTAACTACATCAGTAGTGGAGTTCAGTGATAAACTTACTTACATGCCTGGGATGGCTCCAAGGTCTGCTAACAGGCCTGCTCTGGAGAAAGGAGGCATGCAGATTATGTCCAGGGAGGACAAAACTTCATTGGAACTCTGCCAAGCAATGTGTAGGGCAGGGGAATGGCCTCCATTGCTTGTTGTTTTTGATTCCTGCGAAGGATTTACAGTGGAGGCCGATGGCTGCATAAAGGACTTGACCATCATCACCGAGTATGTGGGTGATGTGGATTAATTT

Fln Alignment:

Contig8936___MAAEQTMSRSNRLRKRTQAPRRLDQQSSFSKHCTRVDTSNIVCEECGLGDCENEMLLCDKCDRGYHMYCLRPIVARVPAGNWxxxNCKADPIKEFPLVQTKIVDFFRIQRSSQAAHTSLLESRKRKKRSTSLIVSKKKRRLLPFTPSKDQARRLQQMGSLATALTTSVVEFSDKLTYMPGMAPRSANRPALEKGGMQIMSREDKTSLELCQAMCRAGEWPPLLVVFDSCEGFTVEADGCIKDLTIITEYVGDVD
D5A8S0______________MAAEQSTGRSNRLRKRTQAPRRLDQQPSYP---------NIFCEECGLGDCENEMLLCDKCDRGYHMYCLRPIVARVPAGRWxxxNCKADPIKEFPLVQTKIIDFFRIQRSSQAAHTSLLESRKRRKRSTSLVVSKKKRRLLPFTPCRDQARRLQQMGSLATALTTSGVEFSDKLTYMPGMAPRSANRPALEKGGMQIMSREDKASLELCQAMCKEGEWPPLLVVFDSCEGFTVEADGCIKDLTIITEYVGDVD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
30	20			80	0.995493
31		20	80		0.995493
33		20		80	0.995493
34	20	80			0.995493
58	80		20		0.995493
178	83		16		0.994512
291	90			10	0.90298
398	83		16		0.994512
422			83	16	0.994512
534	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain