SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8901

Length: 1427 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8901

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SFW5_RICCO	-	-	0.0	62%
FL-Next	tr=Catalytic, putative; Ricinus communis (Castor bean).	-	-	0.0	52%
Sma3	Catalytic, putative	-	-	9.541e-06	-

Source	Gene names
Sma3	At1g15060; At1g15070; At1g73750; F25P22.17; F9L1.1; GSVIVT00017738001; GSVIVT00030406001; Os01g0692600; Os08g0359300; OsI_03352; OsI_28950; OsJ_03092; OsJ_27039; P0034C09.29; P0488B06.39; PHYPADRAFT_11872; PHYPADRAFT_134720; POPTRDRAFT_1085092; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Nematode insulin-related peptide, beta type	IPR003235	-	-
Sma3	Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070	IPR016969	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G15060.1	Uncharacterised conserved protein UCP031088, alpha/beta hydrolase chr1:5184053-5186856 REVERSE LENGTH=578	67%
RefSeq	Arabidopsis thaliana	NP_172960.2	PhaC and hydrolase domain-containing protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002317901.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SFW5

Fln msg: Separated hits, possible frame ERROR between 208 and 210, your sequence is shorter than subject: 310 - 470

Fln protein: SAITAQFVETSERLVKMLEEGQRSVPSQIVDLRERLISTIDDFQKQVDLIVKYDWDFDNYLEEDIPAVxxEYVRNQSKPKDGKLFAIGHSMGGILLYAHLSSSARTGKQSGLAAVVTLGSSLDYTVSNSSLKLLLPLADPAQALNVPVLPLGTLMTAIYPLASQPPYALAWLSPQVSARNMMHPELLKKLVLNNFCTVPAKLILQLATAFRPGGLRNRTGSIYYKDNLGKCETPVLAVAGDEDLICPPEAVLDTAKFFPSHLVTYKLFGGENDIHYGHYDLVGGRLAAHDVYPCIIEFLSNHDKLEISN*

Protein Length: 311

Fln nts: CTCTGCTATTACTGCACAATTTGTAGAAACGAGCGAGAGGCTAGTTAAGATGCTTGAGGAAGGTCAGCGTTCTGTTCCATCACAGATCGTTGATCTGCGTGAGCGCTTGATCTCAACAATAGATGATTTTCAGAAGCAGGTGGATCTGATTGTAAAATATGACTGGGACTTTGATAACTACTTAGAAGAGGACATTCCTGCAGTGATxxxGGAATACGTTCGGAATCAGAGCAAGCCAAAGGATGGAAAATTATTTGCCATTGGTCATTCGATGGGAGGAATTTTGCTTTATGCACATCTGTCATCTTCTGCTAGGACAGGAAAGCAAAGTGGGTTAGCAGCTGTTGTTACATTGGGATCATCACTTGATTACACAGTTTCCAATTCCTCACTGAAGTTGTTGCTTCCTCTTGCAGATCCAGCACAGGCACTTAATGTTCCTGTTCTTCCACTAGGAACATTAATGACAGCAATATATCCACTTGCATCACAACCTCCTTATGCTTTGGCTTGGCTGAGTCCCCAGGTGTCTGCTCGGAATATGATGCATCCAGAGCTGTTAAAGAAGCTTGTCTTGAATAACTTTTGTACAGTACCGGCAAAACTGATTTTACAGCTTGCAACAGCTTTTCGGCCAGGTGGGTTGCGGAATCGAACAGGGTCTATTTATTACAAGGATAATTTAGGAAAATGTGAAACTCCTGTTTTAGCAGTGGCTGGAGATGAGGACTTGATTTGCCCTCCAGAAGCTGTACTAGATACAGCAAAATTTTTTCCTTCGCATTTGGTTACTTACAAGCTCTTTGGTGGAGAGAATGATATTCATTATGGTCACTATGATCTTGTTGGGGGACGTCTGGCAGCTCATGATGTATATCCCTGCATTATTGAATTCCTTAGCAATCATGACAAATTGGAGATCAGTAACTAGTCAGAAAAAGGTGGGATTTGTTTTCGAAAGGTTATTTGATAATGAAGGAATGAGCTGAAGTAAAAAATGTGTTATGATGAATGATTAGTAGTGATCAACGAAGTGTGTTCAATATTAAAAACTGCAAAAATCCCATGTAAAACAATATGCGGGGTTTTCAACCTTTTAGTGACTATGTTGTATGCAACTATCCAAGAGATTTCTGAGAAGTCGTGCAAGCATTTGTAGATTGCAGAAAGCTGAAATTCTCGTATAATATTATGCTGGAAGTTTTATGATGTTCAAATACAAGATCTGGAGTTTGGAAATTTGCAGCAATAAGGTTTCTCTAAACGGGATACCTCCATTTATAACAAGAAAATTCCATAACCATGATGAGACTGAATTATTGGTTGCCATAATAAATATTCCATGTATTATTATCTTGTGCACGCTGTAACACCAATGCAAATTCTGTTGTCTTATATTTCTTTGTTCAGAGGGTCATTATAGGAAATT

Fln Alignment:

Contig8901___ITAQFVETSERLVKMLEEGQRSVPSQIVDLRERLISTIDDFQKQVDLIVKYDWDFDNYLEEDIPAVMxEYVRNQSKPKDGKLFAIGHSMGGILLYAHLSSSARTGKQSGLAAVVTLGSSLDYTVSNSSXXXXXXXXXXXXXXNVPVLPLGTLMTAIYPLASQPPYALAWLSPQVSARNMMHPELLKKLVLNNFCTVPAKLILQLATAFRPGGLRNRTGSIYYKDNLGKCETPVLAVAGDEDLICPPEAVLDTAKFFPSHLVTYKLFGGENDIHYGHYDLVGGRLAAHDVYPCIIEFLSNHD
B9SFW5______________VAKQIKEFRQKFLNIIEEGQHSSKSQFFDFQDRFSNTLEDFLKQVDLILKYDWDFDHYLEEDLPAAMxEYIRTQCCPKDGKLLAVGHSMGGILLYAMLSKFCFEGRDPGLTSVTTLASSLDYTPSKSSLKLLLPVANPAKTFNVPIIPIGALLAAAHPFASRPPYILSWLNPQISAPGMMHPKLFDKLVMNNFCSVPAKLLLQLTTAFEEGGLRNRNGSFFYKDHLGKSNVPVLAIAGDQDLICPPEAVYETVKVIPEHLVTYQVFGEPRGPHYAHYDLVGGHLAAHQVYPCIINFLNRHD

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
520	12			87	0.992554
521	12	87			0.992554
522		87		12	0.992554
523		87	12		0.992554
524		87		12	0.992554
571		33		66	1.0
584	16			83	0.994512
585			16	83	0.994512
587		16		83	0.994512
590	83	16			0.994512
591		83	16		0.994512
629	14			85	0.993533
739		83		16	0.994512
758		16	83		0.994512
761	83			16	0.994512
792		85		14	0.993533
793			14	85	0.993533
794			14	85	0.993533
795	85		14		0.993533
821	88		11		0.923564
822			11	88	0.923564
823			11	88	0.923564
1185	14			85	1.0
1271	90		10		0.90298
1362		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain