SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8878

Length: 2094 nt

UniGene Fasta

>sp_v3.0_unigene8878
TTTTTATGGGGACTCTCAAACTCCAAAATGGCGTCTGAAATTTGGGTCACAAAGCCTCACCCGAGCAACGCCTTCACCCTCATTCTGGTCGCAGTCGGCTGCTTCTACTTGGGAATTAACTGGAAAGTCAGCCTCTACAGTCCTTTCAGCATATCTTCGTTCAAACTCACCGCAGTGTCTGAGAGCTATTCGCAGCACGGGGCTTTCAATTCGTCTAGATCTTCATTCACATTGACAAACGACGGCAACGAGAGCTGGTACATCGATGTCTTTGGGACTGCCAGCGAGGTGCCACGAGGTGGTGGGCTGATCGGTGAAATCGATTTGTGTTCACCATTGATGAGAGACTATGTCCCCTGTCGCGACAATGTGGACGCTGTCCGGCGGCTTCCTTCGACTGCAAGAAGCGAGAATTTGGAGCGCAATTGTCCCGACGAGGAGAGCATTTGGTTCTGTCTGGTTCCGATGCCGAAGAAGTATAAGCGTCCGGTTCCATGGCCCAGAAGCAAAGATGAGGTTTGGTATGGCAATATCCCAAATACACGGTTAGTAGCAGATGAAGGTAGCCAGAAATTGATTGTCTTAGACAATGACAAATTCAGATTTCTTGGAGGTGGAACAGAAGTTGCACAATCAGGGGAGCAATATTTGCAGCAGATTGCCCAGATGGTCCCTGCTTTAAGATTTGGTGTTCATGTTAGAGTTGCTCTGGATGTGGGATGTGGTTTTGCTGGTTTTGGTACTTCATTACTTTCTCACGATGTATTAACTCTTTCAATTGGTCCGAAAGATGCTTATGGACACCAGATCCAATTTGCTCTCGAACGTGGTGTTCCAGCTATGGTAGCAGTGTTTGCAACACATCGGCTCCCATATCCAAGTCAGGCTTTTGACCTGATTCATTGTTCACAGTGTCATGTTAACTGGACTCGTGATGGGGGTATTTTATTACTGGAGGTCAATAGGATGCTCAGGGCTGGAGGTTATTTTGCTTGGGGTGCACAACAGGATAAACAAAAAGAGAACGTGCAGGAAGCTTTGAATGATATCAAGGATCTTGCAATCCGTATCTGTTGGAAACTTGTGAGTGAAGAGGGCCTTGTTGCAATTTGGCAGAAACCTTTCAATAATAATTGTTATGTCAGCCGGCATGTTGGGGTTGAACCTCCGTTGTGTGATGTGCATGATGACCCTGATGATATATGGTATGTGCCATTGAAGACATGTATCTCACGATTACCTGAGAATGGCTCCGGAGGAGGTTGGACCAAATGGCCTCAACGCTTGTACACTCCTCCTGACCGATTGCAGGGTGTAGATATGGAAGCATACATAGCAAAGGATGAGGTGTTTACTGCAGAAGCAGGATATTGGAAAATGTTTGTGAAAAGCAATTTACATAGGCTTGGCTGGAAAGTACATAATGTTCGAAACGTTATGGATATGAAAGCAAATTTTGGAGGGTTTGCCGCTGCTCTAATAGCTGAAGATGCTGATTGTTGGGTAATGAATGTGGTTCCTCTAAGTGGACCAAATACATTGCCTGTGATTTATGACCGTGGTCTGATTGGAGTTGCTCATGATTGGTGTGAACCATTTGATACACATCCTCGGACCTATGATCTTCTTCATGCTTCTGGCCTGTTCTCTATTGAGAAGAGAAGATGTGAGATTGCATATATTATACTTGAGATGGACCGCATTTTACGTCCTGGTGGGCATGCTTATATTCAAGACTCCTTGACCATTCTTGTGGAAATTGAGGGAATTGCAAAGTCTCTCGGGTGGAGGACATTCATGTTTGACACTGAAGAGGGAACATATGGTAGTAGGAAGGTGCTCTATTGTCAAAAACAGGTTTTGATTGGGTTGTAAAAGTACAGATCTATCATGTAAATTGTCATCAATTTACATAATATTTCTAACGTTTTTTAATGAAAAGGATAATATTTGGATTTCGCAAAATTTGAACAGTTGAAGACATCTTAAAAAAGAGAAATTGATGTACTTGCATTGAAACTAAAGGTGGGATTGCATCATTCGATTGTGCTAATGGAGCCTTTTATATTTGACTTGAAATGGGAAAAATTATAC

Ace file of the UniGene sp_v3.0_unigene8878

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SDZ8_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Ankyrin-like protein	-	-	2.804e-15	-

Source	Gene names
Sma3	AT1G26850; AT1G31850; AT4g14360; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g19430; At1g26850; At1g29470; At1g77260; At2g34300; At2g39750; At2g40280; At2g45750; At3g23300; At3g51070; At4g00740; At4g00740/F15P23.2; At4g14360; At5g06050; At5g14430; At5g6

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr2:16578986-16582281 REVERSE LENGTH=694	59%
RefSeq	Arabidopsis thaliana	NP_030521.1	putative methyltransferase PMT11 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002312116.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: atg_distance in limit (1-15): atg_distance = 1, No stop codon before M and low homology subject, your sequence is shorter than subject: 616 - 637

Fln protein: MASEIWVTKPHPSNAFTLILVAVGCFYLGINWKVSLYSPFSISSFKLTAVSESYSQHGAFNSSRSSFTLTNDGNESWYIDVFGTASEVPRGGGLIGEIDLCSPLMRDYVPCRDNVDAVRRLPSTARSENLERNCPDEESIWFCLVPMPKKYKRPVPWPRSKDEVWYGNIPNTRLVADEGSQKLIVLDNDKFRFLGGGTEVAQSGEQYLQQIAQMVPALRFGVHVRVALDVGCGFAGFGTSLLSHDVLTLSIGPKDAYGHQIQFALERGVPAMVAVFATHRLPYPSQAFDLIHCSQCHVNWTRDGGILLLEVNRMLRAGGYFAWGAQQDKQKENVQEALNDIKDLAIRICWKLVSEEGLVAIWQKPFNNNCYVSRHVGVEPPLCDVHDDPDDIWYVPLKTCISRLPENGSGGGWTKWPQRLYTPPDRLQGVDMEAYIAKDEVFTAEAGYWKMFVKSNLHRLGWKVHNVRNVMDMKANFGGFAAALIAEDADCWVMNVVPLSGPNTLPVIYDRGLIGVAHDWCEPFDTHPRTYDLLHASGLFSIEKRRCEIAYIILEMDRILRPGGHAYIQDSLTILVEIEGIAKSLGWRTFMFDTEEGTYGSRKVLYCQKQVLIGL*

Protein Length: 617

Fln nts: TTTTTATGGGGACTCTCAAACTCCAAA_-_ATGGCGTCTGAAATTTGGGTCACAAAGCCTCACCCGAGCAACGCCTTCACCCTCATTCTGGTCGCAGTCGGCTGCTTCTACTTGGGAATTAACTGGAAAGTCAGCCTCTACAGTCCTTTCAGCATATCTTCGTTCAAACTCACCGCAGTGTCTGAGAGCTATTCGCAGCACGGGGCTTTCAATTCGTCTAGATCTTCATTCACATTGACAAACGACGGCAACGAGAGCTGGTACATCGATGTCTTTGGGACTGCCAGCGAGGTGCCACGAGGTGGTGGGCTGATCGGTGAAATCGATTTGTGTTCACCATTGATGAGAGACTATGTCCCCTGTCGCGACAATGTGGACGCTGTCCGGCGGCTTCCTTCGACTGCAAGAAGCGAGAATTTGGAGCGCAATTGTCCCGACGAGGAGAGCATTTGGTTCTGTCTGGTTCCGATGCCGAAGAAGTATAAGCGTCCGGTTCCATGGCCCAGAAGCAAAGATGAGGTTTGGTATGGCAATATCCCAAATACACGGTTAGTAGCAGATGAAGGTAGCCAGAAATTGATTGTCTTAGACAATGACAAATTCAGATTTCTTGGAGGTGGAACAGAAGTTGCACAATCAGGGGAGCAATATTTGCAGCAGATTGCCCAGATGGTCCCTGCTTTAAGATTTGGTGTTCATGTTAGAGTTGCTCTGGATGTGGGATGTGGTTTTGCTGGTTTTGGTACTTCATTACTTTCTCACGATGTATTAACTCTTTCAATTGGTCCGAAAGATGCTTATGGACACCAGATCCAATTTGCTCTCGAACGTGGTGTTCCAGCTATGGTAGCAGTGTTTGCAACACATCGGCTCCCATATCCAAGTCAGGCTTTTGACCTGATTCATTGTTCACAGTGTCATGTTAACTGGACTCGTGATGGGGGTATTTTATTACTGGAGGTCAATAGGATGCTCAGGGCTGGAGGTTATTTTGCTTGGGGTGCACAACAGGATAAACAAAAAGAGAACGTGCAGGAAGCTTTGAATGATATCAAGGATCTTGCAATCCGTATCTGTTGGAAACTTGTGAGTGAAGAGGGCCTTGTTGCAATTTGGCAGAAACCTTTCAATAATAATTGTTATGTCAGCCGGCATGTTGGGGTTGAACCTCCGTTGTGTGATGTGCATGATGACCCTGATGATATATGGTATGTGCCATTGAAGACATGTATCTCACGATTACCTGAGAATGGCTCCGGAGGAGGTTGGACCAAATGGCCTCAACGCTTGTACACTCCTCCTGACCGATTGCAGGGTGTAGATATGGAAGCATACATAGCAAAGGATGAGGTGTTTACTGCAGAAGCAGGATATTGGAAAATGTTTGTGAAAAGCAATTTACATAGGCTTGGCTGGAAAGTACATAATGTTCGAAACGTTATGGATATGAAAGCAAATTTTGGAGGGTTTGCCGCTGCTCTAATAGCTGAAGATGCTGATTGTTGGGTAATGAATGTGGTTCCTCTAAGTGGACCAAATACATTGCCTGTGATTTATGACCGTGGTCTGATTGGAGTTGCTCATGATTGGTGTGAACCATTTGATACACATCCTCGGACCTATGATCTTCTTCATGCTTCTGGCCTGTTCTCTATTGAGAAGAGAAGATGTGAGATTGCATATATTATACTTGAGATGGACCGCATTTTACGTCCTGGTGGGCATGCTTATATTCAAGACTCCTTGACCATTCTTGTGGAAATTGAGGGAATTGCAAAGTCTCTCGGGTGGAGGACATTCATGTTTGACACTGAAGAGGGAACATATGGTAGTAGGAAGGTGCTCTATTGTCAAAAACAGGTTTTGATTGGGTTGTAAAAGTACAGATCTATCATGTAAATTGTCATCAATTTACATAATATTTCTAACGTTTTTTAATGAAAAGGATAATATTTGGATTTCGCAAAATTTGAACAGTTGAAGACATCTTAAAAAAGAGAAATTGATGTACTTGCATTGAAACTAAAGGTGGGATTGCATCATTCGATTGTGCTAATGGAGCCTTTTATATTTGACTTGAAATGGGAAAAATTATAC

Fln Alignment:

Contig8878___CSPLMRDYVPCRDN--VDAVRRLPSTARSENLERNCPDEESIWFCLVPMPKKYKRPVPWPRSKDEVWYGNIPNTRLVADEGSQKLIVLDNDKFRFLGGGTEVAQSGEQYLQQIAQMVPA----LRFGVHVRVALDVGCGFAGFGTSLLSHDVLTLSIGPKDAYGHQIQFALERGVPAMVAVFATHRLPYPSQAFDLIHCSQCHVNWTRDGGILLLEVNRMLRAGGYFAWGAQQD--KQKENVQEALNDIKDLAIRICWKLVSEEGLVAIWQKPFNNNCYVSRHVGVEPPLCDVHDDPDDIWYVPLKTCISRLPE---NGSGGGWTKWPQRLYTPPDRL--QGVDMEAYIAKDEVFTAEA-GYWKMFVKSNLHRLGWKVHNVRNVMDMKANFGGFAAALIAEDADCWVMNVVPLSGPNTLPVIYDRGLIGVAHDWCEPFDTHPRTYDLLHASGLFS-IEKRRCEIAYIILEMDRILRPGGHAYIQDSLTILVEIEGIAKSLGWRTFMFDTEEG----TYGSRKVLYCQKQV
B8LKS3______________CDSRYSELIPCLDRNLIYQLKLKLELSLMEHYERHCPPTERRFNCLIPPPEGYKVPIKWPASRDEVWKVNIPHTHLAEEKSDQNWMIVNGDKINFPGGGTHFHNGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQ-IWNAMSDLVKRMCWKVASKRDQTVIWVKPLTNDCYLKRAPGTKPPLCNSEDDPDASWHVLMKACITPYSDKIHHAKGSGLAPWPKRLTAPPPRLVELGISEEDFVKDTKAWRQRVNSYWK-HMKSEIEH-----DTLRNIMDMNANLGAFGAAL--KDKAVWVMNVVPENGPNTLKAIYDRGLMGTLHNWCEAFSTYPRTYDLLHAWNIFSDIDERGCSIEDLLLEMDRILRPTGFIIIRDKPAIVNYIMKYLAPLRWDSWSSNVEPESDPLSSGDEIVLMARKQL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1048	85		14		0.993533
1261		16	83		0.994512
1262	16		83		0.994512
1331	80			20	0.995493
1339	66			33	0.997452
1340	66			33	0.997452
1468			83	16	0.994512
1471			83	16	0.994512
1473	16			83	0.994512
1509	16		83		0.994512
1510	83	16			0.994512
1513			83	16	0.994512
1544		87	12		0.992554
1550		27		72	1.0
1551			18	81	0.999994
1553	72	18	9		0.999994
1559			85	14	1.0
1564		90	9		0.999872
1566		9	90		0.999872
1568		9		90	0.999872
1570		9	90		0.999872
1611	11			88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain