SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8875

Length: 1807 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam03145, Sina, Seven in absentia protein family	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_711983;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61790.1	Protein with RING/U-box and TRAF-like domains chr3:22871974-22873543 REVERSE LENGTH=326	78%
RefSeq	Arabidopsis thaliana	NP_567118.1	E3 ubiquitin-protein ligase SINAT3 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002303919.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX30

Fln msg: your sequence is shorter than subject: 307 - 323

Fln protein: MSLGGGVCAAVKELMEFSDQPQLLIPADSESYELKNNPTSTGKPSVVAASSVHELLECPVCTNSMYPPIHQCPNGHTLCSECKSRVNNRCPTCRYELGNIRCLALEKVAASLELPCKYQSYGCQEIFPYYSNLKHESQCIFRPYNCPYAGSECKVVGDIPFLVAHLRDDHKVDMHEGFTFNHRYVKSNPLEVENATWMLTVFNCFGKYFCLHFEAFQLGKAPVYIAFLRFMGEDNEAKNFKYSLEVGGSGRKLTWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGSDRKELKLRLTGRIWKEQ*

Protein Length: 308

Fln nts: ATGGGGGGTCAAGCGTATTCAATTTGCATTCAGACTTCGCGTTATTATCAATGTCCGCGTAGACGTCATCCACACGTTCAGCGTATTTTCTTCGAAGCCACTTTTTTTGAATGGAGAGGGAATGTGCCCAACACTGCACTTGCTCACAGGGTAACCCATAAATTCTCGAGCGGCCGCAATTAAATCTCAAGAGATCGTTTTCCCCATTAATACTGTGTTTTTAATCAGCAGACAGTCGAAGCAAAGTGGGATTTGAACGACCCACGAAATGCTTTTGGGGATTTGGATTGGGAAGGGGTTTTTATCTCTGTAACAGAGTGTTACAGGATTTTCTTATTTATATGCTTTGGGTACTTAGAATAGTTCCGCGGGTCATTAGAGTCTCTGCATCTTATTCTGTTATAAGTTCTACATTGGTCATCACAGGAGGAAGCGAAGTTTAAAGTTGGTATCTTGACATCTCGCGACAGAGTT_-_ATGTCATTGGGCGGTGGCGTCTGTGCAGCCGTGAAAGAATTAATGGAGTTTAGTGATCAACCCCAACTACTGATTCCAGCAGATTCAGAATCTTATGAATTGAAAAATAACCCTACATCAACAGGCAAGCCCTCTGTCGTTGCCGCCAGCAGTGTCCATGAGCTGCTCGAATGTCCAGTCTGCACCAATTCTATGTATCCTCCCATTCACCAGTGCCCAAATGGTCATACACTATGCTCCGAATGCAAATCGAGGGTCAACAACCGGTGTCCCACCTGTAGGTACGAACTTGGTAATATTAGGTGCTTGGCTCTTGAAAAGGTGGCAGCATCTCTAGAGCTTCCTTGCAAGTATCAAAGCTATGGTTGCCAGGAGATATTTCCTTACTACAGTAATTTAAAGCATGAATCTCAGTGCATTTTTAGGCCATACAATTGCCCATATGCTGGCTCTGAATGCAAGGTAGTTGGAGATATTCCCTTTTTGGTGGCTCATTTGAGAGATGATCACAAAGTTGATATGCATGAGGGTTTCACCTTCAACCATCGATATGTAAAGTCAAATCCACTTGAGGTTGAAAACGCTACATGGATGCTAACAGTATTCAATTGTTTTGGGAAATACTTCTGTCTACATTTTGAAGCATTTCAATTGGGCAAAGCCCCTGTATATATAGCGTTTCTGCGTTTCATGGGAGAAGATAATGAAGCCAAAAACTTTAAGTACAGCCTCGAGGTTGGAGGCAGTGGTCGGAAACTGACATGGCAGGGGGTTCCTCGTAGTATCAGAGATAGTCACAGGAAAGTTCGTGAGAGTCATGATGGACTCATCATACAAAGAAATATGGCACTATTTTTCTCAGGCAGTGACAGAAAAGAATTGAAGCTTAGACTGACAGGGCGCATATGGAAGGAACAATAA___TTATATGGACCTTTTCAAGATCTCGACTAAGACAAATAAGTTATATCTGCTGTTTGATTTGTTTGTCTCTTGCTGTTGAGTTCATTACAAAGGTTCTGATCCTTTCAATAAGCAAGCTGTCATTGTTAGAGATTCAAGAGAGAAAAATCATATCTAGAAAGTGTATTGGTCGACCACAGTGCAAGTTCTATGCGCATTTTCTCATGTAAAGACGTTCTTATAATTTCTAAACAATGGTAATTTAACTGGATTTCGTATCCATTATTTACATTGTCTTATGGTAATCATCAAATGGATATAAGTTGTTTGTCATTACCAACAAAGTTAGTGGGTGGAGGATTTGGGTGGGTCTGAATCTTTTGTACAATTGATATAACTATATATATGACAAGAGGTCATATCTGTAGTGTTT

Fln Alignment:

Contig8875___NNPTSTGKPSVV--AASSVHELLECPVCTNSMYPPIHQCPNGHTLCSECKSRVNNRCPTCRYELGNIRCLALEKVAASLELPCKYQSYGCQEIFPYYSNLKHESQCIFRPYNCPYAGSECKVVGDIPFLVAHLRDDHKVDMHEGFTFNHRYVKSNPLEVENATWMLTVFNCFGKYFCLHFEAFQLGKAPVYIAFLRFMGEDNEAKNFKYSLEVGGSGRKLTWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGSDRKELKLRLTGRIWKEQ
A9NX30______________NNNTNNSNNGTISPAASSVHELLECPVCTNSMYPPIHQCHNGHTLCSSCKSRVHNKCPTCRQELGDIRCLALEKVAESLELPCKHYNLGCPEIFPYYSKLKHEALCTFRPYNCPYAGSECSVTGDIQSLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFSYSLEVGANGRKMIWQGVPRSIRDSHRKVRESHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
367	50	50			1.0
534	90	10			0.90298
571			90	10	0.90298
572	90	10			0.90298
573	90		10		0.90298
574		10		90	0.90298
605	25	75			1.0
740	11		88		0.923564
741		11	88		0.923564
742	11			88	0.923564
743			88	11	0.923564
1020		25		75	0.996473
1032	20		80		0.995493
1035	80		20		0.995493
1036	80			20	0.995493
1056		60		40	1.0
1072	80		20		0.995493
1084		20		80	0.995493
1085	20		80		0.995493
1086	16			83	0.994512
1088			20	80	0.995493
1089			20	80	0.995493
1101		60		40	1.0
1154		20		60	0.99255
1309	80			20	0.995493
1412		33	66		1.0
1653	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain