SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8850

Length: 3822 nt

UniGene Fasta

>sp_v3.0_unigene8850
CTCCAGCTAATGTCTTTCGAGGCTGGCACAGATGAATACGGATCTTTTTGGCGGTGGTGATGTTGTAGTGAAGTATGTACTCGAGGGACATGATCGTGGTGTGAACTGGGCTGCTTTTCATACCAGCTTGCCATTAATTGTTTCTGGTGCAGATGACCGCCAAGTCAAGCTGTGGCGAATGAATGATACAAAGGCTTGGGAGGTTGACACTCTACGAGGACATACAAACAACGTGTCCTGTGCAATTTTTCATGCACGACAAGATATTATTGTTTCAAATTCTGAAGATAAAAGTATCCGAGTGTGGGATATGTCCAAGCGAACTAGTGTTCAAACTTTTCGTAGAGAGCATGATCGATTCTGGATTCTTGCAGCACATCCTGAGATGAATCTCCTAGCAGCTGGGCATGACAGTGGGATGATTGTGTTCAAATTGGAGAGAGAGAGGCCTGCTTACGTTGTTTATGGGGGCTCGCTGTTGTATGTCAAGGATCGTTATCTGCGGACGTATGAGTTTGCAACTCAAAAGGACAATCCACTAATACCAATTAGGAAGCCTGGTTCCATTGGCCCAAACCAAGGGCCAAGATCTTTGTCATACAGTCCAACAGAGAATGCTATCTTAATTTGTTCAGATGCTGATGGTGGTGCTTATGAACTTTATGCTGTTCCAAAGGATAGTCATGGCAGGAGTGATACAGTACAGGAGGCAAAGAAAGGATTAGGAGGATCTGCTGTCTTTGTGGCTCGCAATCGATTTGCTGTTCTTGACAAGAATCACAATCAAGTCACTATCAAGAATTTAAAAAATGAGGTGACGAAAAAGTTCAATCTTCCAGTCACAGCAGATGCACTTTTCTATGCAGGGACAGGCAACTTGCTTTGCAGATCAGAAGATAGTGTATTTTTGTTTGATATGCAACAGAGGACGGTTTCAGGAGAAATTCAAACCCCTAATGTCAGGTATGTAGTTTGGTCAAATGACATGGAGAATGTTGCCTTACTGAGTAAGCATACAATCATTATTGCAAGCAAGAAGCTGTCAAGTAGGTGTAGTCTGCATGAAACTATTCGTGTTAAAAGTGGGGCTTGGGATGACAATGGCATTTTTATGTACTCAACTTTAAATCACATAAAGTATTGTCTGCCAAATGGAGATAGTGGTATTATCAAGACGCTGGATGTTCCAGTATACATAACAAAGGTTTCTGGAAAGTCTCTCTATTGCCTCGATAGAGATGGCAAGAACCGTGTTATACAGATAGATGTTACCGAGTGTCTTTTCAAGCTAGCACTTAGCAAAAAGAAATATGATTATGTTATAAACATGATTAGAAACTCTCAGCTTTGTGGTCAAGCAATCATAGCTTACCTACAGCAGAAGGGATTTCCAGAAGTGGCTCTTCACTTTGTCAGGGATGAGAGAACTCGATTCAACTTGGCAGTAGAGAGTGGAAATATTGAAATAGCTGTTGCTTCTGCAAAGGAAATTGATGAGAAGGATCACTGGTACAAGCTAGGAGTGGAGGCCCTTAGACAAGGTAATGCTGGAATTGTAGAGTATGCCTATCAAAGGACAAAGAATTTTGAGAGGCTTTCTTTTCTATATCTCATAACTGGTAACCTAGACAAATTGTCAAAGATGTTGAGGATTGCTGAAATGAAAAATGATGTCATGGGCCAATTTCACAATGCACTATATTTGGGTGATATTCGAGAGCGGATCAAGATTTTGGAGGAGTCTGGTCACCTGCACCTTGCTTATGCCACTGCATCATTGCATGGTCTTGCAGACATTGCTGACAGGCTTGCAGCTGATTTGGGTGGCAATATTCCAGTTTTACCTCCAGGGAAAAATCATCACTTCTAATGCCACCTGCCCCCATTCTGCATGGCGGTGACTGGCCTTTGCTCAGGGTTACCAAAGGTATCTTTGAGGGTGGTTTGGAGAATTCCACTTCTGCAGCTTATGAAGAAGAGGATGAAGAAGCTGCTGCTGACTGGGGTGAAGACATAGATATAGAAAACATTGAAGGGGAAAATGGTGAGGCTACAGTGTTGGATGATCAAGAAGTTAGAGGTGGAGAGGATGATGAGGGAGGATGGGACATGGAGGATTTGGAACTTCCTCCAGATGTAGCTGCTGCTAATGTAGGAACCAATCAGAAGACATTGTTTGTAGCCCCAACATTAGGTATGCCGGTAAGCCAAATTTGGATGCAAAAGTCTTCTCTTGCAGGTGAGCATGCAGCTGCAGGCAACTTTGAAACAGCTTTACGCCTACTGACTCGTCAACTGGGCATTAAAAATTTCTCTCCACTGAAACCTCTATTTTTGGAACTTTATATGGGTAGTCATACGTTCCTTCCTTCCTTTGCTTCTGTACCTGCTTTTTCCTTGGCACTACAGAGAGGATGGAGTGAATCTGCTAGTCCGAATATTAGAGGTCCCCCAGCCTTGGTATATAGGCTTTCGGTGCTAGAGGAGAAACTAACGGTAGCCTACAGGGCCACGACAGAAGGTAGGTTTAGTGAAGCACTGAGGCTATTTCTGAACATTCTGCATACAATTCCAGTTATTGTGGTAGACTCAAGAAAGGAAATTGATGAGGTAAAAGAATTGATTGGAATTGCTAAAGAGTATGTTCTTGGTCTTCGGATGGAGGTCAAGAGAAAAGAAATAAAGGACGATGCTGTTCGGCAGCAGGAGCTTGCCGCTTATTTTACTCATTGTAATCTGCAGAAAGCTCATTTGAAGCTGGCTTTGCTAAATGCAATGGGTATTTCTTATAGATGTAAGAACTATAATACAGCAGCAAACTTTGCTCGAAGGCTTCTGGAGACTGACCCTTCTTCAAACCATGCAACAAAGGCTCGACAAGTTCTTCAGGTCTGTGAGAGGAACTTGCAAGATGCGACACAGTTGAACTATGATTTCAGAAATCCTTTTGTTGTCTGCGGGGCAACTTTTACTCCAATATACCGTGGTCAGAAAGAGGTGTCCTGTCCGTATTGCATGGCTCGTTTTGTTCCTGACATTGCTGGGAAACTTTGTTCTATATGTGATCTTGCAATAGTGGGTTCAGATGCATCTGGACTATTTTGTTTTGCTACTCAAACAAGATGATCTTAGCTTTACAGAACAATGATTTTGTGATGCCTTTTATATTCTTTGAGAGTAAATTGTTTGCTGCCATTTCCCATCAGTATATGCAAGAAATGGCTCCATTTATGTCAGGTGATACCAACAGGGGTGTCAGAATAATCGTACAATGCATGCCAGGCTTACGTGAGCAACATGTGAGGATATTTATTTAAACATTATAAGAAGCAGGACGCATGCATGTTTTATTTGCTGTTTCAGTTCCAGAATTGAAGCATGCATGCTGTCTTATTAGCTGTTTCAGTTCTGGATTTTGTTTGCTGTTCTTCTTAGTAAGGCAGAAAGCTTTACTCACTTTGTAAGATGTGATGTAGGAATTTTGTTTACAGTGCAGGGTGGCTATGCCCTCTATTCTTCTCTATTCTGTGCATTGTGGCAAATGGTTTTGTTATACCATTTTTTTGGCCTTGTAGGTGAATAATTGGATTTGCTTGAAAAAGTCAATCATCCTAATTGGAGGACCTAATAAAGGTTACTACTTGAAGCTTTTCTCTACAGTATATATATTGATTATGCAAGCTATCTCAATGATTCGTTAAATTTTTAAGCTGATACATGACTGTTTATTTTGGCGTTAAATTTTTAAGCCGACTCATGACTCTTTATTTTTGAAATAATAAAAGTGTGATTCTGTGGCTAAGCAGAGAATGCTTTTTAAAG

Ace file of the UniGene sp_v3.0_unigene8850

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer subunit alpha-2 [Arabidopsis thaliana] sp\|Q9SJT9.1\|COPA2_ARATH RecName: Full=Coatomer subunit alpha-2; AltName: Full=Alpha-coat protein 2; Short=Alpha-COP 2 gb\|AAD23699.1\| coatomer alpha subunit [Arabidopsis thaliana] dbj\|BAF00596.1\| coatomer alp	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Coatomer subunit alpha-2	-	-	3.002e-08	-

Source	Gene names
Sma3	615K1.1; At1g62020; At2g21390; CHLREDRAFT_195437; CM0216.440.nc; COP1; COPA1; F3K23.15; F8K4.21; GSVIVT00004553001; GSVIVT00004883001; GSVIVT00014508001; LOC_Os03g50340; LOC_Os03g50350; LOC_Os09g04110; MICPUCDRAFT_45432; MICPUN_106869; OJ1352_A10.31-1; OS

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21390.1	Coatomer, alpha subunit chr2:9152428-9156577 FORWARD LENGTH=1218	77%
RefSeq	Arabidopsis thaliana	NP_179734.1	coatomer subunit alpha-2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002321558.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 623 - 314

Fln protein: SS*CLSRLAQMNTDLFGGGDVVVKYVLEGHDRGVNWAAFHTSLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHTNNVSCAIFHARQDIIVSNSEDKSIRVWDMSKRTSVQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPAYVVYGGSLLYVKDRYLRTYEFATQKDNPLIPIRKPGSIGPNQGPRSLSYSPTENAILICSDADGGAYELYAVPKDSHGRSDTVQEAKKGLGGSAVFVARNRFAVLDKNHNQVTIKNLKNEVTKKFNLPVTADALFYAGTGNLLCRSEDSVFLFDMQQRTVSGEIQTPNVRYVVWSNDMENVALLSKHTIIIASKKLSSRCSLHETIRVKSGAWDDNGIFMYSTLNHIKYCLPNGDSGIIKTLDVPVYITKVSGKSLYCLDRDGKNRVIQIDVTECLFKLALSKKKYDYVINMIRNSQLCGQAIIAYLQQKGFPEVALHFVRDERTRFNLAVESGNIEIAVASAKEIDEKDHWYKLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLSKMLRIAEMKNDVMGQFHNALYLGDIRERIKILEESGHLHLAYATASLHGLADIADRLAADLGGNIPVLPPGKNHHF*

Protein Length: 624

Fln nts: CTCCAGCTAATGTCTTTCGAGGCTGGCACAGATGAATACGGATCTTTTTGGCGGTGGTGATGTTGTAGTGAAGTATGTACTCGAGGGACATGATCGTGGTGTGAACTGGGCTGCTTTTCATACCAGCTTGCCATTAATTGTTTCTGGTGCAGATGACCGCCAAGTCAAGCTGTGGCGAATGAATGATACAAAGGCTTGGGAGGTTGACACTCTACGAGGACATACAAACAACGTGTCCTGTGCAATTTTTCATGCACGACAAGATATTATTGTTTCAAATTCTGAAGATAAAAGTATCCGAGTGTGGGATATGTCCAAGCGAACTAGTGTTCAAACTTTTCGTAGAGAGCATGATCGATTCTGGATTCTTGCAGCACATCCTGAGATGAATCTCCTAGCAGCTGGGCATGACAGTGGGATGATTGTGTTCAAATTGGAGAGAGAGAGGCCTGCTTACGTTGTTTATGGGGGCTCGCTGTTGTATGTCAAGGATCGTTATCTGCGGACGTATGAGTTTGCAACTCAAAAGGACAATCCACTAATACCAATTAGGAAGCCTGGTTCCATTGGCCCAAACCAAGGGCCAAGATCTTTGTCATACAGTCCAACAGAGAATGCTATCTTAATTTGTTCAGATGCTGATGGTGGTGCTTATGAACTTTATGCTGTTCCAAAGGATAGTCATGGCAGGAGTGATACAGTACAGGAGGCAAAGAAAGGATTAGGAGGATCTGCTGTCTTTGTGGCTCGCAATCGATTTGCTGTTCTTGACAAGAATCACAATCAAGTCACTATCAAGAATTTAAAAAATGAGGTGACGAAAAAGTTCAATCTTCCAGTCACAGCAGATGCACTTTTCTATGCAGGGACAGGCAACTTGCTTTGCAGATCAGAAGATAGTGTATTTTTGTTTGATATGCAACAGAGGACGGTTTCAGGAGAAATTCAAACCCCTAATGTCAGGTATGTAGTTTGGTCAAATGACATGGAGAATGTTGCCTTACTGAGTAAGCATACAATCATTATTGCAAGCAAGAAGCTGTCAAGTAGGTGTAGTCTGCATGAAACTATTCGTGTTAAAAGTGGGGCTTGGGATGACAATGGCATTTTTATGTACTCAACTTTAAATCACATAAAGTATTGTCTGCCAAATGGAGATAGTGGTATTATCAAGACGCTGGATGTTCCAGTATACATAACAAAGGTTTCTGGAAAGTCTCTCTATTGCCTCGATAGAGATGGCAAGAACCGTGTTATACAGATAGATGTTACCGAGTGTCTTTTCAAGCTAGCACTTAGCAAAAAGAAATATGATTATGTTATAAACATGATTAGAAACTCTCAGCTTTGTGGTCAAGCAATCATAGCTTACCTACAGCAGAAGGGATTTCCAGAAGTGGCTCTTCACTTTGTCAGGGATGAGAGAACTCGATTCAACTTGGCAGTAGAGAGTGGAAATATTGAAATAGCTGTTGCTTCTGCAAAGGAAATTGATGAGAAGGATCACTGGTACAAGCTAGGAGTGGAGGCCCTTAGACAAGGTAATGCTGGAATTGTAGAGTATGCCTATCAAAGGACAAAGAATTTTGAGAGGCTTTCTTTTCTATATCTCATAACTGGTAACCTAGACAAATTGTCAAAGATGTTGAGGATTGCTGAAATGAAAAATGATGTCATGGGCCAATTTCACAATGCACTATATTTGGGTGATATTCGAGAGCGGATCAAGATTTTGGAGGAGTCTGGTCACCTGCACCTTGCTTATGCCACTGCATCATTGCATGGTCTTGCAGACATTGCTGACAGGCTTGCAGCTGATTTGGGTGGCAATATTCCAGTTTTACCTCCAGGGAAAAATCATCACTTCTAA___TGCCACCTGCCCCCATTCTGCATGGCGGTGACTGGCCTTTGCTCAGGGTTACCAAAGGTATCTTTGAGGGTGGTTTGGAGAATTCCACTTCTGCAGCTTATGAAGAAGAGGATGAAGAAGCTGCTGCTGACTGGGGTGAAGACATAGATATAGAAAACATTGAAGGGGAAAATGGTGAGGCTACAGTGTTGGATGATCAAGAAGTTAGAGGTGGAGAGGATGATGAGGGAGGATGGGACATGGAGGATTTGGAACTTCCTCCAGATGTAGCTGCTGCTAATGTAGGAACCAATCAGAAGACATTGTTTGTAGCCCCAACATTAGGTATGCCGGTAAGCCAAATTTGGATGCAAAAGTCTTCTCTTGCAGGTGAGCATGCAGCTGCAGGCAACTTTGAAACAGCTTTACGCCTACTGACTCGTCAACTGGGCATTAAAAATTTCTCTCCACTGAAACCTCTATTTTTGGAACTTTATATGGGTAGTCATACGTTCCTTCCTTCCTTTGCTTCTGTACCTGCTTTTTCCTTGGCACTACAGAGAGGATGGAGTGAATCTGCTAGTCCGAATATTAGAGGTCCCCCAGCCTTGGTATATAGGCTTTCGGTGCTAGAGGAGAAACTAACGGTAGCCTACAGGGCCACGACAGAAGGTAGGTTTAGTGAAGCACTGAGGCTATTTCTGAACATTCTGCATACAATTCCAGTTATTGTGGTAGACTCAAGAAAGGAAATTGATGAGGTAAAAGAATTGATTGGAATTGCTAAAGAGTATGTTCTTGGTCTTCGGATGGAGGTCAAGAGAAAAGAAATAAAGGACGATGCTGTTCGGCAGCAGGAGCTTGCCGCTTATTTTACTCATTGTAATCTGCAGAAAGCTCATTTGAAGCTGGCTTTGCTAAATGCAATGGGTATTTCTTATAGATGTAAGAACTATAATACAGCAGCAAACTTTGCTCGAAGGCTTCTGGAGACTGACCCTTCTTCAAACCATGCAACAAAGGCTCGACAAGTTCTTCAGGTCTGTGAGAGGAACTTGCAAGATGCGACACAGTTGAACTATGATTTCAGAAATCCTTTTGTTGTCTGCGGGGCAACTTTTACTCCAATATACCGTGGTCAGAAAGAGGTGTCCTGTCCGTATTGCATGGCTCGTTTTGTTCCTGACATTGCTGGGAAACTTTGTTCTATATGTGATCTTGCAATAGTGGGTTCAGATGCATCTGGACTATTTTGTTTTGCTACTCAAACAAGATGATCTTAGCTTTACAGAACAATGATTTTGTGATGCCTTTTATATTCTTTGAGAGTAAATTGTTTGCTGCCATTTCCCATCAGTATATGCAAGAAATGGCTCCATTTATGTCAGGTGATACCAACAGGGGTGTCAGAATAATCGTACAATGCATGCCAGGCTTACGTGAGCAACATGTGAGGATATTTATTTAAACATTATAAGAAGCAGGACGCATGCATGTTTTATTTGCTGTTTCAGTTCCAGAATTGAAGCATGCATGCTGTCTTATTAGCTGTTTCAGTTCTGGATTTTGTTTGCTGTTCTTCTTAGTAAGGCAGAAAGCTTTACTCACTTTGTAAGATGTGATGTAGGAATTTTGTTTACAGTGCAGGGTGGCTATGCCCTCTATTCTTCTCTATTCTGTGCATTGTGGCAAATGGTTTTGTTATACCATTTTTTTGGCCTTGTAGGTGAATAATTGGATTTGCTTGAAAAAGTCAATCATCCTAATTGGAGGACCTAATAAAGGTTACTACTTGAAGCTTTTCTCTACAGTATATATATTGATTATGCAAGCTATCTCAATGATTCGTTAAATTTTTAAGCTGATACATGACTGTTTATTTTGGCGTTAAATTTTTAAGCCGACTCATGACTCTTTATTTTTGAAATAATAAAAGTGTGATTCTGTGGCTAAGCAGAGAATGCTTTTTAAAG

Fln Alignment:

Contig8850___SRLAQMNTDLFGGGDVVVKYVLEGHDRGVNWAAFHTSLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHTNNVSCAIFHARQDIIVSNSEDKSIRVWDM
A9NPC1______________SASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDC--IKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
2023	14			85	0.993533
2026	83			16	0.994512
3381			87	12	0.992554
3382		87	12		0.992554
3476	85		14		0.993533
3527		16		83	0.994512
3580	16		83		0.994512
3584	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2362	2375	TTCC TTCC TTCC TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain