SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8825

Length: 1738 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8825

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	0.0	86%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	ECs	Term	Type	e value	Identity
Sma3	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		0.0	%
Sma3	Selenocompound metabolism	00450		0.0	%

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	-
Sma3	removal of superoxide radicals	GO:0019430	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17420.1	NTRA, ATNTRA, NTR2 NADPH-dependent thioredoxin reductase A chr2:7564357-7566219 FORWARD LENGTH=378	77%
RefSeq	Arabidopsis thaliana	NP_179334.4	NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002317631.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXV4

Fln msg:

Fln protein: MGERLMSRIRLLLGLRKAFSVFRKTPSSVPSVQSSVQAERRMGTTTGEVELEKMRASTCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMELTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRVYTDAKQVDADTVIIATGAVAKRLDFPGAGEGDDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTVVLEASGNKRGLLSGLNLRNTVTGEVSVLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTKPGTTHTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHYLQEMGGQEGKYS*

Protein Length: 381

Fln nts: TT_-_ATGGGAGAACGACTGATGAGCAGAATTAGGCTGCTGTTGGGCCTGAGGAAGGCGTTTTCGGTTTTCAGGAAGACGCCGTCGTCAGTTCCTTCGGTACAATCCAGTGTCCAAGCAGAAAGACGAATGGGAACGACGACAGGGGAGGTGGAACTGGAGAAGATGAGAGCGTCGACGTGCATAGTGGGGAGCGGACCAGCGGCGCACACGGCGGCCATATACACAGCACGGGCGGAGCTGAAGCCCATTCTCTTCGAAGGATGGATGGCCAACGGAATCGCCCCCGGTGGCCAACTGACGACCACAACTGACGTAGAAAACTTCCCAGGCTTCCCGCAGGGAATAATGGGGATGGAATTGACGGAGAAATTCAAGGAGCAGAGTCTCCGTTTTGGGACGCGGGTTTTCACGGAGACAGTGGTCCGCCTCGATTTGTCAGTAAGACCATTCAGGGTTTACACGGATGCGAAGCAGGTGGACGCTGATACCGTCATCATTGCCACGGGGGCGGTGGCCAAGCGCCTGGATTTTCCGGGGGCTGGCGAGGGAGATGACGGGTTCTGGAACAGGGGTATCTCTGCCTGCGCCGTCTGTGATGGTGCCGCTCCCATTTTCCGCAACCGGCCTCTGGCTGTGATTGGGGGCGGAGACTCGGCAATGGAGGAGGCCAACTTCTTGACCAAATACGGTAGCAAAGTTTATATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGTAGTCCTCGAGGCTTCTGGCAACAAGAGGGGTTTGCTCAGCGGGCTGAATCTGCGTAACACGGTCACCGGTGAGGTATCAGTGTTGGAAGTATCGGGGTTGTTCTTCGCCATTGGGCATGAACCGGCCACCAAGTTTCTGGAGGGGCAGTTGGAATTGGACTCGGACGGTTACATAGTGACAAAGCCTGGAACCACCCATACCAGTATTCCCGGGGTGTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGTCAAGCAATCACAGCTGCGGGCACGGGCTGCATGGCAGCATTGGAAGCGGAGCACTATTTGCAGGAGATGGGGGGACAGGAGGGAAAATATAGTTGA___TTGTGCTGGAAAGCACAACTACTCTTACTTGAGAAATCGACAGTTCTTGAATAAAAGGATGGCCTGTATTAGTGGTATTTATGCAAGTTTGCTAGTTTTATGTGTAGGGCTTCTATTTTTTTAATTAACCCAATTATTTCTACTTGGGTTTTCTGGGAGATGAGTTCAAATAGGCATGGATAGTAGCATTGAATGATCATATGCCAAGAAGTGTCCAATTTGCCGACATATAAAGTGCTTGTGTCGATGACGTTAACTTTGAAAACGGGCTTGCTCTGCCTTTCATTGTAATAAGAACTTTACGAACTTGCAAAGAGCGTGGTCATTGTTCGTTTTGTTTACTTCACCATATTTCCTAAATCAGTACTGGGATATATGCATTTCAAAGAAACCCCCACAAAGAATTTGTCGACATTCGTTAACTTAGATCAGTAGGCACGAGAAAGATCTATGTAAGGAGGGGTGAATCTTGGAAATTTCTGTAACGGCAACGACTGTTTCACCTGGTATTTGTTTTGTTTGAATCATTCACTTTTTATTACTTAAGGCAATTAAGTCTATTTAACCTTTCTTGTTTGTTGCATTGTTGAAAGCAC

Fln Alignment:

Contig8825___MSRIRLLLGLRKAFSVFRKTXXXXXXXXXXXXAE--RRMGTTTGEVELEKMRASTCIVGSGPXXXXXXXXXXXXELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMELTEKFKEQSLRFGTRVFTETVVRLDLSVRPFRVYTDAKQVDADTVIIATGAVAKRLDFPGAGEGDDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTVVLEASGNKRGLLSGLNLRNTVTGEVSVLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTKPGTTHTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHYLQEMGGQEGKYS
A9NXV4______________MTRIRVLSGLKKAFSVFRKTPSLVPSVSPSPSSVGGRGMGSTTGEVELEKMRAATCIVGSGPAAHTAAIYTARAELKPILFEGWMANGIAPGGQLTTTTDVENFPGFPQGIMGMDLTEKFKEQSVRFGTRVFTETVVRLDLSVRPFRVYTDTKQVDADTVIIATGAVAKRLDFPGAGEGEDGFWNRGISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRTLDNPKIEVIWNTEVLKASGNESGSLSGLNLRNTVTDEVSVLEVSGLFFAIGHEPATKFLEGQLELDSAGYIVTKPGTTQTNIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHYLQEIGGQEGKYS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
92	16	83			0.994512
94			16	83	0.994512
95		83	16		0.994512
473	42		57		1.0
759		10	90		0.90298
761	90			10	0.90298
848	14		85		0.993533
1349	80		20		0.995493
1672	5			94	0.998397

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain