SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8816

Length: 2320 nt

UniGene Fasta

>sp_v3.0_unigene8816
CGTCGTGACCTTGGCTGTCACTCACTTTTTTGTCCTCCCTCCAGCACAATTTTTTGTTCTCTTTTCCCATATCTGATTTCTCTCTCCGATTCCGCTGCCTTGTTCGTGCTGTTCTTCTCTGGTTGGCGGCTTCACTAACCAAGCCTCTCTCTGCCTTTCCATCTGTACCAATCTCAATCTCAGGCTTGCCAACCTGACCATGAATTAAAAAATCAATTAAGAGAATTCCCTTGTTGCTCTCTGATAAGATCTGTACTCCACCCGTGGAATTTATATTCCCAAAGTATGCAAATCCCATATAAGTCTGCACACCAACAAAGCAAGAACCATACACAAATAGGCCCATAACCAGGTCATATCCATATATGTAGAACGCCCAGTATATCCTGCTTTGAAGATCTGATTGCCGAAAGCAGAGGCACAGACCTCAAAAAAAGAATATAGTATCTTTGTTACCATACCTCCGCTGCTTCTCAGGTTCCTCCCCTGCCCAATCACCACCAGAGGCCCACCTCTTCATTTCCTCATCGTTACACTTATACCCATCTAGGTTACGGAGGTGCCACGTCCGGGTCTTTCATAGGACTGTAAGTGTGTATATTATATAATATATCTATTTGTTGGTGTTTGTTGCGTGTTTCGCCCCCCTTGTGGACAGGGCGTTTCTGGTCCCTTTTTCTGTGGGTGAGAATGTGAGGAGGCATTCCATTGTTGAGAAGTAATTGAAGGAAATGGACAGAGCAGCGGCAGGTCTGGGTCCAGTGGGCATGGACTTGCCCATTATGCACGACAATGATCGATATGAGCTCGTTAAGGACATTGGCTCGGGCAATTTCGGGGTGGCCAGGCTTATGCGAGACAGGCAGACCAGAGAGCTGGTGGCAGTGAAGTATATTGAGAGGGGCGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATAAATCATCGCTCATTGCGGCATCCAAACATTGTCAGATTTAAAGAGGTAATATTAACACCAACTCACTTGGCAATTGTTATGGAGTATGCGTCTGGGGGAGAGCTCTTTGAGCGCATTTGTAATGCTGGTCGCTTTAGCGAGGATGAGGCTCGTTTTTTCTTCCAGCAGCTCATATCAGGGGTGAAGTATTGCCATTCTATGCAAGTTTGTCATCGGGATCTTAAGCTGGAGAACACACTTTTGGATGGAAGCCCTGCTCCTCGTCTGAAGATTTGTGATTTTGGTTACTCAAAGTCCTCGTTGCTCCACTCCCAGCCAAAATCAACTGTAGGAACCCCTGCATACATTGCTCCTGAAGTGTTATCAAAGAAAGAATACGACGGGAAGATTGCAGATGTTTGGTCGTGTGGAGTCACACTTTATGTTATGTTAGTAGGAGCATACCCATTTGAGGACCCTGAAGAGCCGAGGAACTTTAAAAAGACTATTCAGCGTATTTTGAATGTGCAGTATTCGATTCCAGATTATGTTCATATTTCTCAAGAATGTCAACGCCTCCTTTCTAGGATTTTTGTTGCAAATCCTACCACGAGAATATCGATTCCTGAGATCCAGAATCATGAATGGTTCTTGAAGAATCTACCAGAAGATTTGGTAGATGCAGGTGAAAGTAGCAGTCAGTTTGATGATCCAGGTCATCCACCTCAAAGTGTTGACGAGATTATGCGTATCATTGCTGAGGCCAGAATACCTGCCCCAGGGTTTGGTGGGATAGGTAATTATTTTGGAGGAAGCCTGGATTTTGATGACATGGACCTAGAGAATGATGATGCAGACCTTGATATTGAGAGCAGCGGGGAGTTTGTAATTGCTATGTAACTGTCTTCTTATTGGAATTTCTTTGAATTTGCAACTGGGTCTCTAGCCTGCAGATTGCTTTTCTTAGTTTATATCTTCTAAGCCAGACCGAAATTTCCTTTCGCAAGGCTTGGCAGCACGAACTGCAGTTCATTGCAAGCTGGTTAGTGCTATGAGTGTAGTTATAAAACAGGTTAACGGTATGTAAGTAATGTGTGGTAAGAAAAATGATAGATGCCCTGTATGCTGTAGTGAATTCATGGCAGCAGGTTGTAAACATAAATATAAATATTTTGTAGAACTCCTTTTGACGTGGGTCTAACTCTGGTAAGGAGTGCGGTGTGTTATTATTCAGAGTATCTGACCACGGGAGCATTTTAAAGATAAACCGTAATTGTGAACTCTAATTCTCATGGAATCTTTTTCATAGTGGTTCTTTTGTTCTGTCATGTATTCAGTGGTTGGTTATGAATATACATGACCTATCTAAAGCCGAATTAAGGACAGTTAAAGCTTTTGTT

Ace file of the UniGene sp_v3.0_unigene8816

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] emb\|CAB80112.1\| protein kinase-like protein [Arabidopsis thaliana]	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	CBL-interacting protein kinase 3	-	-	1.708e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	2.924e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose phosphate pathway	00030		2.924e-07	%
Sma3	Lipopolysaccharide biosynthesis	00540		2.924e-07	%
Sma3	Nicotinate and nicotinamide metabolism	00760		2.924e-07	%
Sma3	Metabolic pathways	01100		2.924e-07	%
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	0.0	-
Sma3	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	1.752e-08	-

Source	Gene names
Sma3	41K; AAPK; AK21; ASK1; ASK2; AT3G01090; AT3G29160; AT5G63650; At1g01140; At1g10940; At1g60940; At1g78290; At2g23030; At3g01090; At3g29160; At3g50500; At4g24400; At4g33950; At4g40010; At5g08590; At5g25110; At5g63650; At5g66880; B0308C03.1; B0518A01.2; BSK1

Source	GOs	Term	Type	Identity
Sma3	nuclear ubiquitin ligase complex	GO:0000152	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	orotate phosphoribosyltransferase activity	GO:0004588	Molecular Function	-
Sma3	orotidine-5'-phosphate decarboxylase activity	GO:0004590	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	'de novo' pyrimidine base biosynthetic process	GO:0006207	Biological Process	-
Sma3	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	detection of nutrient	GO:0009594	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	regulation of seed germination	GO:0010029	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	nitrate assimilation	GO:0042128	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	regulation of defense response to virus	GO:0050688	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Orotidine 5'-phosphate decarboxylase domain	IPR001754	-	-
Sma3	Kinase-associated KA1	IPR001772	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	NAF domain	IPR004041	-	-
Sma3	Orotate phosphoribosyl transferase, clade 1	IPR004467	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Orotidine 5'-phosphate decarboxylase	IPR014732	-	-
Sma3		IPR015740	-	-
Sma3		IPR015741	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Orotidine 5'-phosphate decarboxylase, active site	IPR018089	-	-
Sma3	NAF/FISL domain	IPR018451	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33950.1	OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 Protein kinase superfamily protein chr4:16272364-16274657 FORWARD LENGTH=362	85%
RefSeq	Arabidopsis thaliana	NP_567945.1	serine/threonine-protein kinase SRK2E [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002313835.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB4

Fln msg:

Fln protein: MDRAAAGLGPVGMDLPIMHDNDRYELVKDIGSGNFGVARLMRDRQTRELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVKYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRNFKKTIQRILNVQYSIPDYVHISQECQRLLSRIFVANPTTRISIPEIQNHEWFLKNLPEDLVDAGESSSQFDDPGHPPQSVDEIMRIIAEARIPAPGFGGIGNYFGGSLDFDDMDLENDDADLDIESSGEFVIAM*

Protein Length: 364

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTTTTGTCCTCCCTCCAGCACAATTTTTTGTTCTCTTTTCCCATATCTGATTTCTCTCTCCGATTCCGCTGCCTTGTTCGTGCTGTTCTTCTCTGGTTGGCGGCTTCACTAACCAAGCCTCTCTCTGCCTTTCCATCTGTACCAATCTCAATCTCAGGCTTGCCAACCTGACCATGAATTAAAAAATCAATTAAGAGAATTCCCTTGTTGCTCTCTGATAAGATCTGTACTCCACCCGTGGAATTTATATTCCCAAAGTATGCAAATCCCATATAAGTCTGCACACCAACAAAGCAAGAACCATACACAAATAGGCCCATAACCAGGTCATATCCATATATGTAGAACGCCCAGTATATCCTGCTTTGAAGATCTGATTGCCGAAAGCAGAGGCACAGACCTCAAAAAAAGAATATAGTATCTTTGTTACCATACCTCCGCTGCTTCTCAGGTTCCTCCCCTGCCCAATCACCACCAGAGGCCCACCTCTTCATTTCCTCATCGTTACACTTATACCCATCTAGGTTACGGAGGTGCCACGTCCGGGTCTTTCATAGGACTGTAAGTGTGTATATTATATAATATATCTATTTGTTGGTGTTTGTTGCGTGTTTCGCCCCCCTTGTGGACAGGGCGTTTCTGGTCCCTTTTTCTGTGGGTGAGAATGTGAGGAGGCATTCCATTGTTGAGAAGTAATTGAAGGAA_-_ATGGACAGAGCAGCGGCAGGTCTGGGTCCAGTGGGCATGGACTTGCCCATTATGCACGACAATGATCGATATGAGCTCGTTAAGGACATTGGCTCGGGCAATTTCGGGGTGGCCAGGCTTATGCGAGACAGGCAGACCAGAGAGCTGGTGGCAGTGAAGTATATTGAGAGGGGCGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATAAATCATCGCTCATTGCGGCATCCAAACATTGTCAGATTTAAAGAGGTAATATTAACACCAACTCACTTGGCAATTGTTATGGAGTATGCGTCTGGGGGAGAGCTCTTTGAGCGCATTTGTAATGCTGGTCGCTTTAGCGAGGATGAGGCTCGTTTTTTCTTCCAGCAGCTCATATCAGGGGTGAAGTATTGCCATTCTATGCAAGTTTGTCATCGGGATCTTAAGCTGGAGAACACACTTTTGGATGGAAGCCCTGCTCCTCGTCTGAAGATTTGTGATTTTGGTTACTCAAAGTCCTCGTTGCTCCACTCCCAGCCAAAATCAACTGTAGGAACCCCTGCATACATTGCTCCTGAAGTGTTATCAAAGAAAGAATACGACGGGAAGATTGCAGATGTTTGGTCGTGTGGAGTCACACTTTATGTTATGTTAGTAGGAGCATACCCATTTGAGGACCCTGAAGAGCCGAGGAACTTTAAAAAGACTATTCAGCGTATTTTGAATGTGCAGTATTCGATTCCAGATTATGTTCATATTTCTCAAGAATGTCAACGCCTCCTTTCTAGGATTTTTGTTGCAAATCCTACCACGAGAATATCGATTCCTGAGATCCAGAATCATGAATGGTTCTTGAAGAATCTACCAGAAGATTTGGTAGATGCAGGTGAAAGTAGCAGTCAGTTTGATGATCCAGGTCATCCACCTCAAAGTGTTGACGAGATTATGCGTATCATTGCTGAGGCCAGAATACCTGCCCCAGGGTTTGGTGGGATAGGTAATTATTTTGGAGGAAGCCTGGATTTTGATGACATGGACCTAGAGAATGATGATGCAGACCTTGATATTGAGAGCAGCGGGGAGTTTGTAATTGCTATGTAA___CTGTCTTCTTATTGGAATTTCTTTGAATTTGCAACTGGGTCTCTAGCCTGCAGATTGCTTTTCTTAGTTTATATCTTCTAAGCCAGACCGAAATTTCCTTTCGCAAGGCTTGGCAGCACGAACTGCAGTTCATTGCAAGCTGGTTAGTGCTATGAGTGTAGTTATAAAACAGGTTAACGGTATGTAAGTAATGTGTGGTAAGAAAAATGATAGATGCCCTGTATGCTGTAGTGAATTCATGGCAGCAGGTTGTAAACATAAATATAAATATTTTGTAGAACTCCTTTTGACGTGGGTCTAACTCTGGTAAGGAGTGCGGTGTGTTATTATTCAGAGTATCTGACCACGGGAGCATTTTAAAGATAAACCGTAATTGTGAACTCTAATTCTCATGGAATCTTTTTCATAGTGGTTCTTTTGTTCTGTCATGTATTCAGTGGTTGGTTATGAATATACATGACCTATCTAAAGCCGAATTAAGGACAGTTAAAGCTTTTGTT

Fln Alignment:

Contig8816___GPVGMDLPIMHDNDRYELVKDIGSGNFGVARLMRDRQTRELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVKYCHSMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRNFKKTIQRILNVQYSIPDYVHISQECQRLLSRIFVANPTTRISIPEIQNHEWFLKNLPEDLVDAGES-SSQFDDPGHPPQSVDEIMRIIAEARIPAPXXXXXXXXXXXSXXXXXXXXXXXXXXXXIESSGEFVIAM
B8LKB4______________GGSSMDLPIMHDNDRYELVKDIGSGNFGVARLMRDKQTKELVAVKYIERGEKIDENVQREIINHRSLKHPNIVRFREVILTPTHLAIVMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEILSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDDPRNFKKTIGRILGVQYTIPDYVHVSVECRHLLSRIFVADPDKRITIPEIRNHEWFLKNLPADLLDAADTISNQCDDLDQPSQSIDDIMRIIAEARIPAP--GSGLGQYFGDSFELDDMDLENDGDLDVDSSGEFVCAL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
315	66		33		1.0
372	83		16		0.994512
648	20	80			0.995493
649		80		20	0.995493
650		80	20		0.995493
651		80	20		0.995493
652			20	80	0.995493
653			20	80	0.995493
1198		90	10		0.90298
1217		10		90	0.90298
1742	10		90		0.90298
1743		10	90		0.90298
1976		7		92	0.999602
2217	11		88		0.999952
2268		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain