SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8799

Length: 2233 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene8799
ATGGGGAACTAAATCCGATTTCAGTGCTAATTGGATTCCGCTCATCATTCGAAGAATCAACGATGAGCATGGCTTTTCCCTTCCCATCCAAGCAATCCAGAATCCCAAAATCATGCCATCTTTTTGTTATTCTCCTCCTTCATCATCAAGCAAGAGAGACGGGCGCTGCTGGCCTTGATTTCACATCATGAAGCCGCCCTTGTCCCCGCCTCCGCCCTTTTTTCTGTAACTTCTCCCCACCACAAGATTTCGCCATATTTTTCTAAGCAGAAAACCAAAAAGGGAGTATTGCAAGCTGCCCAAAATGACAGACGTCCTCCCTTCAAAACACTACAATACTGCTCCGAACTACGACTCCTCTTCCTCTTCACCTCCTTCAGACGAAGACGACGATGAGACCGTGTTGAATACCACTTCCCCTCTTATCACACACGACCGGAGAATAAGGGACCAGCGGCTGACTCAGAGAGTGGACCAGAACAGAGCTCAGTTATCTGCTGTTGCTCTCGTCCTAGCAGCCCTGAGAAAGTCCGTTGTGGCTTGCAGAGCAACCAGAGAGGATTCCTGTTCTATGGAGATCAGCTGGCCAACAAATGCCAGGCATGTTGTTCATGTCACGTTTGATCGGTTCCATGGCTTCCTGGGATTACCTGTGGAGTTTGAGCTTGAAGTTCCTAGAAGGGTTCCCAGTGCCAGTGTAAGTGTCTTTGGAGTTTCTGCAGAATCAATGCAGTGTTCATATGATTCAAGGGGCAACAGTGTGCCCACAATTCTTCTGCTTATGCAGAAGAGGTTGTACGCCCAAGGAGGTCTAAAGGCAGAGGGCATATTCCGAATCAACGCAGAGAATAGCCAAGAAGAGCATGTCAGGAACCAACTAAACAAAGGGATTGTGCCACATGATATTGATCTGCATTGTTTGGCAGGTTTGATAAAGGCATGGTTCAGGGAGCTTCCAAGGGGGGTGTTAGACTCACTTACTCCTGAACAAGTAATGCAATGCAATACTGAAGATCAGTGTCTTGAACTGGTCAGGGGTCTACCTCCCACTCAAGCAGCTCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTTGTACAAGAAGAGCAATACAACAAGATGAATTCACGGAACATTGCAATGGTCTTTGCACCCAACATGACCCAGATGGCTGACCCTTTAACAGCTCTGATGTATGCTGTACAAGTAATGAATTTTCTGAAGACTTTAATTATGCAAACTTTAAGAGATCGACAAGTGGCAGCATTAGATCCTAGACCAGACTCTTCTTGTAGAGATCCGTATGATGAAAATGATCATGATAATGCACCACTAGGGTTAAGGGCAAAACACGAACAAGGGCATAACATAGAAGATGATGAAAATGCATGTGGCAGTGTTGAGTCTCCTTTGGATGGCTATTCACATAGCACTGAGGATGAATCAGTTAATGATGTAGAAGAGAGCTTTTTGACTTTTGGTGAGAAAGATATCTCTGATGCAGATGGAATTCCCATTGATGGTAAAGTAGATGACTTCAGTCCAAGGGACAGTCTTAGTAACAAACTAAGGAAGACTAGAGGAATAGAGGGATTTAATGTATCTGATGTTTTTGGCATTAAAAAAGGTGCTGTGATGTATAATTCAGAAAATGACCATGAGGGGGCAAGCACAAGTGAAGGTGATTCTGTTGTTATCAATGAGATTAAAAGTGATTCATTTTGGAGGAACAATGCAGATACTGCCAAGGGAGCTGGGAAACAGTGTACTCAGTGCATGGTTCAAGTGATGCAGCCCACAGAGAAATCAAAAGGCAGGAGTGTCATAAACCAAATCAATCAGCAGATTGAACGAGCAGAAGCTTGGCGATGAATATGTACTTACATTTGTTTCATTTTTTTACAAACCTTATATGTTGTGTGATGAATTTGCTGTTTCTCATGGGAGGAGTCTTGGTATTTGACAGTTTTGAACAATTTGTGCTGAGTGTGTGGTTATTGGGCAGTGGTCTTGAATTCTTCTTTCTCAAGTAGACCAGTGCACAGCCAAGTCTTCCCATTTTTTCCTAATAACTATGTAACCTTTTGTAAATTATTTGATTATTCCACACTTCGGTCCAATCGTAGCACATGATGCATGGCAATGTGTTAGGCTATTCCTTTTGATGCTTGTGTTCGTAGATTTCTTCTAGATTGTTTTGAAATGCATAATGATAATATACTATTCCTTTCC

Ace file of the UniGene sp_v3.0_unigene8799 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rac GTPase activating protein 1 [Lotus japonicus]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	56%
Sma3	Putative rac GTPase activating protein	-	-	4.353e-19	-

Source	Gene names
Sma3	AT4g03100; At1g08340; At2g27440; At2g46710; At3g11490; At5g22400; F24K9.16; F4C21.2; GSVIVT00021595001; GSVIVT00023609001; GSVIVT00026140001; GSVIVT00037335001; H0404F02.3; LOC_Os11g05540; LOC_Os12g34840; MtrDRAFT_AC150442g3v2; OSJNBa0020J04.11; Os01g0967

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	signal transduction	GO:0007165	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	0.0	-
Sma3	Rho GTPase-activating protein domain	IPR000198	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain chr5:7423050-7425335 REVERSE LENGTH=466	69%
RefSeq	Arabidopsis thaliana	NP_197632.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002312823.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HHF3

Fln msg: your sequence is longer than subject: 523 - 479

Fln protein: MTDVLPSKHYNTAPNYDSSSSSPPSDEDDDETVLNTTSPLITHDRRIRDQRLTQRVDQNRAQLSAVALVLAALRKSVVACRATREDSCSMEISWPTNARHVVHVTFDRFHGFLGLPVEFELEVPRRVPSASVSVFGVSAESMQCSYDSRGNSVPTILLLMQKRLYAQGGLKAEGIFRINAENSQEEHVRNQLNKGIVPHDIDLHCLAGLIKAWFRELPRGVLDSLTPEQVMQCNTEDQCLELVRGLPPTQAALLDWAINLMADVVQEEQYNKMNSRNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIMQTLRDRQVAALDPRPDSSCRDPYDENDHDNAPLGLRAKHEQGHNIEDDENACGSVESPLDGYSHSTEDESVNDVEESFLTFGEKDISDADGIPIDGKVDDFSPRDSLSNKLRKTRGIEGFNVSDVFGIKKGAVMYNSENDHEGASTSEGDSVVINEIKSDSFWRNNADTAKGAGKQCTQCMVQVMQPTEKSKGRSVINQINQQIERAEAWR*

Protein Length: 524

Fln nts: ATGGGGAACTAAATCCGATTTCAGTGCTAATTGGATTCCGCTCATCATTCGAAGAATCAACGATGAGCATGGCTTTTCCCTTCCCATCCAAGCAATCCAGAATCCCAAAATCATGCCATCTTTTTGTTATTCTCCTCCTTCATCATCAAGCAAGAGAGACGGGCGCTGCTGGCCTTGATTTCACATCATGAAGCCGCCCTTGTCCCCGCCTCCGCCCTTTTTTCTGTAACTTCTCCCCACCACAAGATTTCGCCATATTTTTCTAAGCAGAAAACCAAAAAGGGAGTATTGCAAGCTGCCCAAA_-_ATGACAGACGTCCTCCCTTCAAAACACTACAATACTGCTCCGAACTACGACTCCTCTTCCTCTTCACCTCCTTCAGACGAAGACGACGATGAGACCGTGTTGAATACCACTTCCCCTCTTATCACACACGACCGGAGAATAAGGGACCAGCGGCTGACTCAGAGAGTGGACCAGAACAGAGCTCAGTTATCTGCTGTTGCTCTCGTCCTAGCAGCCCTGAGAAAGTCCGTTGTGGCTTGCAGAGCAACCAGAGAGGATTCCTGTTCTATGGAGATCAGCTGGCCAACAAATGCCAGGCATGTTGTTCATGTCACGTTTGATCGGTTCCATGGCTTCCTGGGATTACCTGTGGAGTTTGAGCTTGAAGTTCCTAGAAGGGTTCCCAGTGCCAGTGTAAGTGTCTTTGGAGTTTCTGCAGAATCAATGCAGTGTTCATATGATTCAAGGGGCAACAGTGTGCCCACAATTCTTCTGCTTATGCAGAAGAGGTTGTACGCCCAAGGAGGTCTAAAGGCAGAGGGCATATTCCGAATCAACGCAGAGAATAGCCAAGAAGAGCATGTCAGGAACCAACTAAACAAAGGGATTGTGCCACATGATATTGATCTGCATTGTTTGGCAGGTTTGATAAAGGCATGGTTCAGGGAGCTTCCAAGGGGGGTGTTAGACTCACTTACTCCTGAACAAGTAATGCAATGCAATACTGAAGATCAGTGTCTTGAACTGGTCAGGGGTCTACCTCCCACTCAAGCAGCTCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTTGTACAAGAAGAGCAATACAACAAGATGAATTCACGGAACATTGCAATGGTCTTTGCACCCAACATGACCCAGATGGCTGACCCTTTAACAGCTCTGATGTATGCTGTACAAGTAATGAATTTTCTGAAGACTTTAATTATGCAAACTTTAAGAGATCGACAAGTGGCAGCATTAGATCCTAGACCAGACTCTTCTTGTAGAGATCCGTATGATGAAAATGATCATGATAATGCACCACTAGGGTTAAGGGCAAAACACGAACAAGGGCATAACATAGAAGATGATGAAAATGCATGTGGCAGTGTTGAGTCTCCTTTGGATGGCTATTCACATAGCACTGAGGATGAATCAGTTAATGATGTAGAAGAGAGCTTTTTGACTTTTGGTGAGAAAGATATCTCTGATGCAGATGGAATTCCCATTGATGGTAAAGTAGATGACTTCAGTCCAAGGGACAGTCTTAGTAACAAACTAAGGAAGACTAGAGGAATAGAGGGATTTAATGTATCTGATGTTTTTGGCATTAAAAAAGGTGCTGTGATGTATAATTCAGAAAATGACCATGAGGGGGCAAGCACAAGTGAAGGTGATTCTGTTGTTATCAATGAGATTAAAAGTGATTCATTTTGGAGGAACAATGCAGATACTGCCAAGGGAGCTGGGAAACAGTGTACTCAGTGCATGGTTCAAGTGATGCAGCCCACAGAGAAATCAAAAGGCAGGAGTGTCATAAACCAAATCAATCAGCAGATTGAACGAGCAGAAGCTTGGCGATGA___ATATGTACTTACATTTGTTTCATTTTTTTACAAACCTTATATGTTGTGTGATGAATTTGCTGTTTCTCATGGGAGGAGTCTTGGTATTTGACAGTTTTGAACAATTTGTGCTGAGTGTGTGGTTATTGGGCAGTGGTCTTGAATTCTTCTTTCTCAAGTAGACCAGTGCACAGCCAAGTCTTCCCATTTTTTCCTAATAACTATGTAACCTTTTGTAAATTATTTGATTATTCCACACTTCGGTCCAATCGTAGCACATGATGCATGGCAATGTGTTAGGCTATTCCTTTTGATGCTTGTGTTCGTAGATTTCTTCTAGATTGTTTTGAAATGCATAATGATAATATACTATTCCTTTCC

Fln Alignment:

Contig8799___CRATREDSCSMEISWPTNARHVVHVTFDRFHGFLGLPVEFELEXXXXXXXXXXXVFGVSAESMQCSYDSRGNSVPTILLLMQKRLYAQGGLKAEGIFRINAENSQEEHVRNQLNKGIVPHDIDLHCLAGLIKAWFRELPRGVLDSLTPEQVMQCNTEDQCLELVRGLPPTQAALLDWAINLMADVVQEEQYNKMNSRNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIMQTLRDRQVAALDPRPDSSCRDPYDENDHDNAPLGLRAKHEQGHNIEDDENACGSVESPLDGYSHSTEDESVNDVE-ESFLTFGEKDISDADGIPIDGKVDDFSPRDSLSNKLRKTRGIEGFNVSDVFGIKKGAVMYNSENDHEGASTSEGDSVVINEIKSDSFWRNNADTAKGAGKQCTQCMVQVMQ--PTEKSKGRSVINQINQQIERAEAWR
F6HHF3______________CKTDREELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYLQGGLQAEGIFRINAENSQEEYVREQLNRGVVPEGIDLHCLAGLIKAWFRELPTGVLDSLSPEQVMQCQAEEECAELVRLLPPTEAALLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIIKTLREREDSMVEPAPTSSL-EPFDENGHQSPSQPTWLENTAQDN-EETEQAFIMEEPVLESPPYCTQNKHVEDREAHGFLTSLEKSLPNMDG--------SFETLTQVETFVAET---------EVYAV-----------------DSPKTGVQANPLKSKSGQSSNSNIKKGP-KTINRQPSSVCEPGPLEKTKGISNLSRINSRTERIEAWR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
128	14		85		0.993533
129	14			85	0.993533
130			85	14	0.993533
132	85			14	0.993533
174	88			11	0.923564
882		85		14	0.993533
970		10		90	0.90298
1011		10		90	0.90298
1172	88	11			0.999937
1174			88	11	0.999937
1396	33		66		1.0
1438	28		71		1.0
1478		88		11	0.923564
1479		22	11	66	0.999999
1480		25	75		1.0
1481	25			75	1.0
1705			84	10	0.999846
2078		12		87	0.992554
2079		50		50	1.0
2100		12	87		0.992554
2101	87	12			0.992554
2102		12	87		0.992554
2103		12	87		0.992554
2105			87	12	0.992554
2139	16	16	66		0.988813
2140		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain