SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8789

Length: 2041 nt

UniGene Fasta

>sp_v3.0_unigene8789
ATGGGGCCTTCCACGAAGCGGGGAGGCTGCCCACCTCTGGATTTGCATGTAGCGCAGTGCAGTCTCTGTCGTCGCAATTGTGGCTCCTGTGAATTAATAAATTAGATTTGAGACGGATTGCTTTCAATTCGATTAGTTAAAGAACGTCGTACCTTGGCTGTTGCTGCACTTTTGGTTTTCAATTACCATGTGAAAATTGGAGGTTGGGCGCGCTGCTGAATCCATCCATGGCTAACTTCGAGGTTCTCTGTGGGCGTGGAAGAGCTTCAGGGAAAAGGTTCCGCAGTCAAAGTCTTTGTGAATGGATTCCCCATTGCAGGCGCTCCTGTTTACAAAAACGCAGAGGTTTATGGGGAGAGGTAATCTTACTTGACGCACATGGTGGATCTGTAAATTTAGACGCCAATTCGTCGAACGAGCAGGGGCCTTCTAGAAACCCTGAAAGTCAAAATGTGGGAAACCGTCTCAACCCCAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGATGGAAGAAATGAAATACAAGATCTTTGAACTTAAATTCATGGTGGAAAAGGGCTTCTCGGACGCTAGAGCTAACAAGCGCGGCAGTGTTCGAAGAAGCCCTGTTCGCCCGACAAATAAAAGGATGAACAGAATCATGATCGTTGATTGCAGAGATGGAGACTCCACAACAAATCAACTGCAATCTTCAAGTGTAAGAGGGACTGAGAGGATTCATCCTCCACACATGCCAACGGGTCTGTTAATCGATGTTGACGATGTACGGGAAGAAACTTGTAAACACTGGTCTTCTAGGAATCGGGCAGAGAAGAAAGGAGTGCGACTAGTTCGTAGAAATCAAGTTTTGAAGCTAGATGAGCGCCTCGATACCAACATCATTGACAAATATATGGAGAGCCATTGGAATTTATCTGAGTTCTCTGTCATTTTGGAGAGGGTTTCGGTACCCCAACAAGGACACCATGCATGTTGCTTTTGGATTCATTGAAGGAAACAAATCCAAATCGGCTTGAACCCCTGATAAGAAAGTTCCTCATAGATATTCATAAAGAAGAAGGCAAGCAGGACGGGGACAAAATAATTGCAAAGATCCCTCTTTTGGTTCCCGATGTGCCTCAGCAGACAAATGGTAATGACTCTGGTGTTTTCCTGCTCCATTTCATTGATCTCTTTTTGCAATCGGCTCCAGAGAATTTCAGCATATCTAATGGTTGTTATCCTTATTTTCTCACCAAAGATTGGTTCAAGAGTGACGAAATTCAAAAGCGTCGAAAACACATCTACAATATGTGTTTGGAGGAACGGCATTCTGTAAGCTAGATGACAAACAGGAGAATTTCAGCAAGAAGTAAAAAGTTCCATCGTTTTTGTTCATACTGATTACATGTCAAACTGGATTGATCTTTCAAGCGCTGCTTGAGAGACTGGTTGCAACACCTGTACAAATTGTATCATAAACTTGTAGCTCTACACGTACCTTTCTTGATTCTCTATGAAAGATGAGGAGAAATCACTGAGCATGGTCATATTTGTCTTTGCTGTTGATTTTTGAAACATTAAGAGAGATTATCATTTCTTCAGCTTGATTGCAAATGAGAAAACTCTTAAAAGTAGTAGTGTTGCCATGATATGCAATTACTTCAGGCAACTTTGGCTTTGTTTGCATGTGCAAGATGGGACAGAACTTTGTGAGTCTAGGGACTTGTAATATCTTCACAACCAGTTTGGTGCTCATCCTTTTCAATGAACTGCTTGCCTCTTTCTACAAGGGTTAGGCAACTAACTCATACTGGATGACATGATGTTCTCTTCGCATTCCAATGAAGCCAAACATCAGATGATAGGAAAAAGACAGATGTATATTGTAAATGTGGAGAGAGACTTTATACTGACATACTTTTGCAAAACATGAGCGATGCCATGTATTCGGATGGATGTAACACTGATTATGAGCAACTCCTCATATGCATCTATTTTCTTCAAAAAATTGCAAGAATAGCATTGAGC

Ace file of the UniGene sp_v3.0_unigene8789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ulp1 protease family protein, putative [Solanum demissum]	-	-	8.0e-27	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Sentrin/sumo-specific protease, putative	-	-	5.009e-09	-

Source	Gene names
Sma3	GSVIVT00010469001; LOC_Os11g10780; OA_CBa016E12-1; OsI_35527; OsJ_33360; POPTRDRAFT_575302; POPTRDRAFT_822351; RCOM_1077230; RCOM_1507360; SDM1_19t00010;

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322226.1	predicted protein [Populus trichocarpa]	6.0e-34	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABE8

Fln msg:

Fln protein: MANFEVLCGRGRASGKRFRSQSLCEWIPHCRRSCLQKRRGLWGEVILLDAHGGSVNLDANSSNEQGPSRNPESQNVGNRLNPKGKVDNEGGESSVKLALAQRRMEEMKYKIFELKFMVEKGFSDARANKRGSVRRSPVRPTNKRMNRIMIVDCRDGDSTTNQLQSSSVRGTERIHPPHMPTGLLIDVDDVREETCKHWSSRNRAEKKGVRLVRRNQVLKLDERLDTNIIDKYMESHWNLSEFSVILERVSVPQQGHHACCFWIH*

Protein Length: 266

Fln nts: ATGGGGCCTTCCACGAAGCGGGGAGGCTGCCCACCTCTGGATTTGCATGTAGCGCAGTGCAGTCTCTGTCGTCGCAATTGTGGCTCCTGTGAATTAATAAATTAGATTTGAGACGGATTGCTTTCAATTCGATTAGTTAAAGAACGTCGTACCTTGGCTGTTGCTGCACTTTTGGTTTTCAATTACCATGTGAAAATTGGAGGTTGGGCGCGCTGCTGAATCCATCC_-_ATGGCTAACTTCGAGGTTCTCTGTGGGCGTGGAAGAGCTTCAGGGAAAAGGTTCCGCAGTCAAAGTCTTTGTGAATGGATTCCCCATTGCAGGCGCTCCTGTTTACAAAAACGCAGAGGTTTATGGGGAGAGGTAATCTTACTTGACGCACATGGTGGATCTGTAAATTTAGACGCCAATTCGTCGAACGAGCAGGGGCCTTCTAGAAACCCTGAAAGTCAAAATGTGGGAAACCGTCTCAACCCCAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGATGGAAGAAATGAAATACAAGATCTTTGAACTTAAATTCATGGTGGAAAAGGGCTTCTCGGACGCTAGAGCTAACAAGCGCGGCAGTGTTCGAAGAAGCCCTGTTCGCCCGACAAATAAAAGGATGAACAGAATCATGATCGTTGATTGCAGAGATGGAGACTCCACAACAAATCAACTGCAATCTTCAAGTGTAAGAGGGACTGAGAGGATTCATCCTCCACACATGCCAACGGGTCTGTTAATCGATGTTGACGATGTACGGGAAGAAACTTGTAAACACTGGTCTTCTAGGAATCGGGCAGAGAAGAAAGGAGTGCGACTAGTTCGTAGAAATCAAGTTTTGAAGCTAGATGAGCGCCTCGATACCAACATCATTGACAAATATATGGAGAGCCATTGGAATTTATCTGAGTTCTCTGTCATTTTGGAGAGGGTTTCGGTACCCCAACAAGGACACCATGCATGTTGCTTTTGGATTCATTGA___AGGAAACAAATCCAAATCGGCTTGAACCCCTGATAAGAAAGTTCCTCATAGATATTCATAAAGAAGAAGGCAAGCAGGACGGGGACAAAATAATTGCAAAGATCCCTCTTTTGGTTCCCGATGTGCCTCAGCAGACAAATGGTAATGACTCTGGTGTTTTCCTGCTCCATTTCATTGATCTCTTTTTGCAATCGGCTCCAGAGAATTTCAGCATATCTAATGGTTGTTATCCTTATTTTCTCACCAAAGATTGGTTCAAGAGTGACGAAATTCAAAAGCGTCGAAAACACATCTACAATATGTGTTTGGAGGAACGGCATTCTGTAAGCTAGATGACAAACAGGAGAATTTCAGCAAGAAGTAAAAAGTTCCATCGTTTTTGTTCATACTGATTACATGTCAAACTGGATTGATCTTTCAAGCGCTGCTTGAGAGACTGGTTGCAACACCTGTACAAATTGTATCATAAACTTGTAGCTCTACACGTACCTTTCTTGATTCTCTATGAAAGATGAGGAGAAATCACTGAGCATGGTCATATTTGTCTTTGCTGTTGATTTTTGAAACATTAAGAGAGATTATCATTTCTTCAGCTTGATTGCAAATGAGAAAACTCTTAAAAGTAGTAGTGTTGCCATGATATGCAATTACTTCAGGCAACTTTGGCTTTGTTTGCATGTGCAAGATGGGACAGAACTTTGTGAGTCTAGGGACTTGTAATATCTTCACAACCAGTTTGGTGCTCATCCTTTTCAATGAACTGCTTGCCTCTTTCTACAAGGGTTAGGCAACTAACTCATACTGGATGACATGATGTTCTCTTCGCATTCCAATGAAGCCAAACATCAGATGATAGGAAAAAGACAGATGTATATTGTAAATGTGGAGAGAGACTTTATACTGACATACTTTTGCAAAACATGAGCGATGCCATGTATTCGGATGGATGTAACACTGATTATGAGCAACTCCTCATATGCATCTATTTTCTTCAAAAAATTGCAAGAATAGCATTGAGC

Fln Alignment:

Contig8789___MANFEVLCGRGRASGKRFRS-QSLCEWIPHCRRSCLQKRRGLWGEVILLDAHGGSVNLDANSSNEQGPSRNPESQNVGNRL-----NPKGKVDNEGGESSVKLALAQ--RRMEEMKYKIFELKFMVEKGFSDARANKRGSVRRSPVR-----PTNKRMNRIMIVDCRDGDSTTNQLQSSSVRGTERIHPPHMPTGLLIDVDDVREETCKHWSSRNRAEKKGVRLVRRNQVLKLDERLDTNIIDKYMESHWNLSE
D5ABE8______________MANFGVLRGRGRASGKSPPSCDSLFACIPRRRRSCLQKRRRLWGKVVFLDAHGGSVNLDANSSIKQRPSRNPESQNVENRVIVKLRNPKGKLDVGGGESSVELSWSSMDRRIEEMKYKTLETNFMVKEGFADPRANKRDSVQRRSVYKGLAVPRNKRMKRTTIVDCKDGDSTTSQLQSSSVSGPEKIHPQHMPTGLLIDVDDEREETCKRWSSRNRGRKKPVRLVRRNQVSNLDKHLDTNIIDKYME--WSYTQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1627	12			87	0.992554
1630	87		12		0.992554
1631			12	87	0.992554
1679	60		40		1.0
1758		20		80	0.995493
1763	71		28		1.0
1764	28	71			1.0
1769			42	57	1.0
1775	16	66	16		0.988813
1776		16	33	50	1.0
1777	33	66			1.0
1778	66		33		1.0
1780		66	33		1.0
1784		16		83	0.994512
1785	16			83	0.994512
1786		83	16		0.994512
1787	83			16	0.994512
1788	83		16		0.994512
1789		16		83	0.994512
1790	16	16	66		0.988813
1793	25	75			0.996473
1802	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain