SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8771

Length: 2266 nt

UniGene Fasta

>sp_v3.0_unigene8771
ATGGGGGAACACACCTCTAAACCCGATAACGACTATCGAATGTGACGCCAATTTGTCCTCCTACTGCGTCTTCTCTACACGCTGAACGCGAAATCTTTGCAGTTATTCGACTGATCCATCACCTGCCTCGGCGATTCCTCTGATTCGGCGACCAGCAGGCTCACCAGCGGTTTCTGGGCAACACAATGGCGATGCTTGATGAGCCACTATATCCAATTGCCATTCTGATTGATGAATTAAAGAATGAGGACATTCAGCTACGACTTAACTCTATTCGAAGACTTTCAACAATTGCTCGTGCCCTGGGTGAAGAGAGAACCAGAAAGGAATTGATCCCCTTTCTGAGTGAAAACAATGATGATGATGATGAGGTTTTGCTTGCCATGGCAGAAGAATTGGGAGTTTTCATTCCATATGTTGGTGGGGTGGATTATGCACATGTTTTACTGCCTCCTCTGGAAACTCTTTGTACAGTTGAGGAAACCTGTGTGAGGGATAAGGCCGTGGAATCATTATGTCGTATTGGATCACAAATGAAGGAAAATGATCTCGTGGATTGGTTCATTCCACTTGTGAAGAGGCTTGCTGCCGGTGAGTGGTTTACAGCAAGGGTGTCTGCATGTGGGCTTTTTCATATTGCATATCCAAGTGCACCTGAACTTCTAAAAGCCGAATTGCGATCTATATATGGTCAACTCTGCCAGGATGATATGCCAATGGTTAGAAGATCTGCGGCAACAAACCTGGGAAAATATGCTGCAACAGTTGAACCACAATATCTGAAGACAGACATCATGTCATTTTTTGAGGATCTCACACATGATGATCAGGATTCAGTGAGGCTTTTAGCTGTTGAGGGTTGTGCAGCCCTTGGGAAACTATTGGAACCACAGGACTGTGCAGCACATATTCTTCCAGTTATTATAGCATTCTCTCAGGATAAGTCCTGGCGAGTTCGTTATATGGTGGCAAATCAGTTATATGAACTTTGTGAGGCAGTTGGCCCAGAGCCTACCAGGGCGGACCTGGTGCCGGCATATGTGCGACTGCTGCGTGACAATGAAGCAGAAGTCCGTATCGCTGCCGCCGGAAAGGTGACAAAATTTTGCAGAATATTGAATCCTCAACTTGCAATCCAGCACATACTTCCTTGTGTAAAGGAATTATCAACAGATTCCTCACAGCATGTGCGGTCTGCCTTGGCTTCTGTTATCATGGGCATGGCACCTGTCTTGGGGAAGGAGGCAACAATTGATCAACTACTTCCAATTTTCCTTGCACTGCTAAAAGATGAATTCCCTGATGTTCGGCTTAACATCATAAGCAAGCTTGATCAAGTGAATCAGGTGATTGGAATTGATTTGCTGTCTCAATCTCTTCTGCCAGCAATTGTTGAGCTTGCAGAAGACAGGCATTGGAGAGTCCGACTTGCGATTATAGAATACATTCCTTTACTTGCCAGTCAGTTGGGGGTGGAATTTTTTGATGATAAATTAGGTTCACTCTGCATGCATTGGCTAGGTGACCAGGTTTTTTCAATACGTGAAGCGGCTGCCAATAACTTGAAGAGACTTGCTGAAGAATTTGGTCCAGAATGGGCAATACAGCATATTGTTCCACAGGTCCTGGAGAAGATAAATAATCCTCACTACTTGTATCGCATGACAATTTTGAATGCTACGTCACTTCTAGCTCCAGTCATGGGACGAGAAATCACATGCCAAACAATGTTACCTGTGGTGATTAATGCTTCAAAGGATAGGGTTCCAAACATCAAATTCAATGTTGCAAAGGTGCTTCAGTCGCTGATTCCAATTGTTGATCACACGGTTGTAGAGCAGTCCATTCGCCCTTGCCTTGTTGAGCTCAGTGAAGATCCTGATGTTGATGTAAGATACTTTGCTGGTCAAGCACTCCAGGCCTGTGATCAGGTCATGATGTCATCTTAAATATAGCAATCTTGGGGATGCCTTCTGTTTCTCGTCAAAGTTGCTTGAAGCCTTTGATGTATTTGTTGGGAGTTAGTCGCTATAGCAAGTCAAGATTTTCATGAATTGATGGCTTGTCACATTGACTTGTTTGTCATTTTTCCTGAGATGTTTTCACTAGGAAGATTTTTTTGTACTCATAAGAACAAGAGCAATACATGTATTTGGGGCCAATATTTGGTGATCATTATTTTGGAGTTTACTGGTCAGGCAGGCCACATCTCTACTCTTGCGTTACTGATTTTCATTGTTAAAGATATGATTGCATTCATTTTATC

Ace file of the UniGene sp_v3.0_unigene8771

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2A subunit A2 [Arabidopsis thaliana] sp\|Q38950.2\|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform dbj\|BAA95767.1\| protein pho	-	-	88%
FL-Next	sp=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	88%
Sma3	Protein phosphatase 2A A subunit	-	-	-

Source	Gene names
Sma3	RPA; RPA1;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-
Sma3	HEAT	IPR000357	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25800.1	PDF1, PR 65, PP2AA2 protein phosphatase 2A subunit A2 chr3:9422822-9425783 REVERSE LENGTH=587	88%
RefSeq	Arabidopsis thaliana	NP_189208.1	protein phosphatase 2A subunit A2 [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002332045.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q38950

Fln msg:

Fln protein: MAMLDEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMKENDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPELLKAELRSIYGQLCQDDMPMVRRSAATNLGKYAATVEPQYLKTDIMSFFEDLTHDDQDSVRLLAVEGCAALGKLLEPQDCAAHILPVIIAFSQDKSWRVRYMVANQLYELCEAVGPEPTRADLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPQLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKEATIDQLLPIFLALLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVEFFDDKLGSLCMHWLGDQVFSIREAAANNLKRLAEEFGPEWAIQHIVPQVLEKINNPHYLYRMTILNATSLLAPVMGREITCQTMLPVVINASKDRVPNIKFNVAKVLQSLIPIVDHTVVEQSIRPCLVELSEDPDVDVRYFAGQALQACDQVMMSS*

Protein Length: 589

Fln nts: ATGGGGGAACACACCTCTAAACCCGATAACGACTATCGAATGTGACGCCAATTTGTCCTCCTACTGCGTCTTCTCTACACGCTGAACGCGAAATCTTTGCAGTTATTCGACTGATCCATCACCTGCCTCGGCGATTCCTCTGATTCGGCGACCAGCAGGCTCACCAGCGGTTTCTGGGCAACACA_-_ATGGCGATGCTTGATGAGCCACTATATCCAATTGCCATTCTGATTGATGAATTAAAGAATGAGGACATTCAGCTACGACTTAACTCTATTCGAAGACTTTCAACAATTGCTCGTGCCCTGGGTGAAGAGAGAACCAGAAAGGAATTGATCCCCTTTCTGAGTGAAAACAATGATGATGATGATGAGGTTTTGCTTGCCATGGCAGAAGAATTGGGAGTTTTCATTCCATATGTTGGTGGGGTGGATTATGCACATGTTTTACTGCCTCCTCTGGAAACTCTTTGTACAGTTGAGGAAACCTGTGTGAGGGATAAGGCCGTGGAATCATTATGTCGTATTGGATCACAAATGAAGGAAAATGATCTCGTGGATTGGTTCATTCCACTTGTGAAGAGGCTTGCTGCCGGTGAGTGGTTTACAGCAAGGGTGTCTGCATGTGGGCTTTTTCATATTGCATATCCAAGTGCACCTGAACTTCTAAAAGCCGAATTGCGATCTATATATGGTCAACTCTGCCAGGATGATATGCCAATGGTTAGAAGATCTGCGGCAACAAACCTGGGAAAATATGCTGCAACAGTTGAACCACAATATCTGAAGACAGACATCATGTCATTTTTTGAGGATCTCACACATGATGATCAGGATTCAGTGAGGCTTTTAGCTGTTGAGGGTTGTGCAGCCCTTGGGAAACTATTGGAACCACAGGACTGTGCAGCACATATTCTTCCAGTTATTATAGCATTCTCTCAGGATAAGTCCTGGCGAGTTCGTTATATGGTGGCAAATCAGTTATATGAACTTTGTGAGGCAGTTGGCCCAGAGCCTACCAGGGCGGACCTGGTGCCGGCATATGTGCGACTGCTGCGTGACAATGAAGCAGAAGTCCGTATCGCTGCCGCCGGAAAGGTGACAAAATTTTGCAGAATATTGAATCCTCAACTTGCAATCCAGCACATACTTCCTTGTGTAAAGGAATTATCAACAGATTCCTCACAGCATGTGCGGTCTGCCTTGGCTTCTGTTATCATGGGCATGGCACCTGTCTTGGGGAAGGAGGCAACAATTGATCAACTACTTCCAATTTTCCTTGCACTGCTAAAAGATGAATTCCCTGATGTTCGGCTTAACATCATAAGCAAGCTTGATCAAGTGAATCAGGTGATTGGAATTGATTTGCTGTCTCAATCTCTTCTGCCAGCAATTGTTGAGCTTGCAGAAGACAGGCATTGGAGAGTCCGACTTGCGATTATAGAATACATTCCTTTACTTGCCAGTCAGTTGGGGGTGGAATTTTTTGATGATAAATTAGGTTCACTCTGCATGCATTGGCTAGGTGACCAGGTTTTTTCAATACGTGAAGCGGCTGCCAATAACTTGAAGAGACTTGCTGAAGAATTTGGTCCAGAATGGGCAATACAGCATATTGTTCCACAGGTCCTGGAGAAGATAAATAATCCTCACTACTTGTATCGCATGACAATTTTGAATGCTACGTCACTTCTAGCTCCAGTCATGGGACGAGAAATCACATGCCAAACAATGTTACCTGTGGTGATTAATGCTTCAAAGGATAGGGTTCCAAACATCAAATTCAATGTTGCAAAGGTGCTTCAGTCGCTGATTCCAATTGTTGATCACACGGTTGTAGAGCAGTCCATTCGCCCTTGCCTTGTTGAGCTCAGTGAAGATCCTGATGTTGATGTAAGATACTTTGCTGGTCAAGCACTCCAGGCCTGTGATCAGGTCATGATGTCATCTTAA___ATATAGCAATCTTGGGGATGCCTTCTGTTTCTCGTCAAAGTTGCTTGAAGCCTTTGATGTATTTGTTGGGAGTTAGTCGCTATAGCAAGTCAAGATTTTCATGAATTGATGGCTTGTCACATTGACTTGTTTGTCATTTTTCCTGAGATGTTTTCACTAGGAAGATTTTTTTGTACTCATAAGAACAAGAGCAATACATGTATTTGGGGCCAATATTTGGTGATCATTATTTTGGAGTTTACTGGTCAGGCAGGCCACATCTCTACTCTTGCGTTACTGATTTTCATTGTTAAAGATATGATTGCATTCATTTTATC

Fln Alignment:

Contig8771___MAMLDEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMKENDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPELLKAELRSIYGQLCQDDMPMVRRSAATNLGKYAATVEPQYLKTDIMSFFEDLTHDDQDSVRLLAVEGCAALGKLLEPQDCAAHILPVIIAFSQDKSWRVRYMVANQLYELCEAVGPEPTRADLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPQLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKEATIDQLLPIFLALLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVEFFDDKLGSLCMHWLGDQVFSIREAAANNLKRLAEEFGPEWAIQHIVPQVLEKINNPHYLYRMTILNATSLLAPVMGREITCQTMLPVVINASKDRVPNIKFNVAKVLQSLIPIVDHTVVEQSIRPCLVELSEDPDVDVRYFAGQALQACDQVMMSS
Q38950______________MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
46		85	14		0.993533
48		85	14		0.993533
49		85	14		0.993533
195	12	87			0.992554
196	12			87	0.992554
495			87	12	0.992554
505			10	90	0.90298
2027		84		15	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
355	370	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain