SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8766

Length: 1588 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8766

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R919_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Similarity to AAA-type ATPase	-	-	4.141e-23	-

Source	Gene names
Sma3	AT4g30250; At1g43910; At1g43910/F9C16_7; At2g18190; At2g18193; At3g28510; At3g28540; At3g28580; At3g28600; At3g50930; At3g50940/F18B3_220; At4g05380; At4g25835; At4g30250; At5g17730; At5g17740; At5g17760; At5g40010; At5g57480; F18B3.210; F18B3.220; F9N11.

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR001984	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase-like, arabidopsis	IPR007942	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G40010.1	AATP1 AAA-ATPase 1 chr5:16020218-16021762 REVERSE LENGTH=514	49%
RefSeq	Arabidopsis thaliana	NP_198817.1	AAA-ATPase 1 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002322133.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D7

Fln msg: Separated hits, possible frame ERROR between 187 and 189,

Fln protein: MEIWSNLGSIMASVLFIHTIAKEYLPPDFYEFFSKSLRSLIGILSPYISVVxxEESDGMKVSEVYEAAQTYLSVRSSSAAKRLKLKKPQNKKEFIFSMDRNEQIAEEYEGIKLWWVFHSSKPKQQVMFSWDSTSEEKRSYELTFHKKHKQKIFEQYLPHIMAEAKTLEVRNRYRKIYINQSSYADYEYRKRVWTPVVFDHPATFDTLALEPELKQDILEDLQRFSRREKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLIATTNKSIIVIEDIDCSLDLSDRKKKKKKADTDEEKDKKASEPDEKENEESKVTLSGVLNFTDGLWSCCGSERLFVFTTNHIDRLDPALLRSGRMDKHILLSFCTFGAFKTLARNYLSMEDHELFPQIQDLMEAAQMTPADVTEHLMKKAEQPTSALRNLIQALREAKERIASGPLKGISEEENATATEEQV*

Protein Length: 479

Fln nts: TTTTATTCGGGGATTTCCTGGTTTGAGGAAA_-_ATGGAGATCTGGTCCAATTTGGGGTCGATCATGGCTTCTGTGCTATTCATACATACCATAGCCAAGGAATACCTTCCCCCTGATTTCTATGAATTTTTTTCAAAATCTCTGCGCAGTCTCATAGGGATACTGTCTCCTTACATCTCAGTTGTCATxxxAGAGGAGAGCGATGGGATGAAGGTGAGCGAAGTTTATGAGGCAGCGCAGACTTACCTGAGCGTAAGGTCGTCCTCCGCTGCAAAGAGATTAAAGCTGAAGAAGCCACAGAATAAAAAGGAGTTTATCTTCAGTATGGACAGAAACGAGCAGATCGCAGAGGAATACGAGGGTATCAAACTGTGGTGGGTCTTCCACAGCAGTAAGCCCAAACAGCAGGTCATGTTCTCCTGGGACTCCACCTCCGAGGAGAAACGCTCTTACGAGTTGACATTTCACAAGAAACACAAGCAAAAGATATTCGAGCAGTATCTTCCCCATATCATGGCCGAAGCGAAAACGCTGGAGGTTAGAAACCGCTACAGAAAGATTTACATCAATCAATCCAGTTACGCGGACTATGAATACCGAAAGAGGGTGTGGACGCCCGTTGTATTCGATCATCCAGCCACTTTCGATACTCTGGCCCTGGAACCAGAGCTGAAGCAGGATATTCTGGAAGACCTGCAGAGATTCTCGAGGAGAGAGAAGTATTACAGGCAAGTTGGGCGGGCATGGAAGAGGGGTTATTTGCTCTATGGGCCCCCTGGAACGGGCAAGTCGAGTATGATTGCAGCCATGGCTAACTTTCTGGATTACGACATCTACGATCTGGAGCTAACCCAAGTGAAGAACAACACGGAACTGAGGAAGCTTCTTATCGCCACCACCAACAAATCGATAATCGTGATAGAAGATATCGACTGTTCTCTCGATCTCTCGGACCGCAAGAAGAAGAAGAAGAAGGCAGATACAGATGAGGAGAAGGACAAAAAAGCGTCGGAGCCGGATGAGAAGGAAAACGAGGAGAGCAAAGTGACCCTTTCGGGGGTTTTGAACTTCACAGACGGTTTGTGGTCGTGTTGCGGAAGCGAGAGATTGTTCGTTTTCACCACCAACCACATCGACAGGCTCGACCCGGCGCTTCTCCGGTCTGGTCGCATGGACAAACACATTCTCCTCTCATTCTGCACTTTTGGCGCATTCAAGACTCTAGCCCGCAATTACCTCTCCATGGAAGACCATGAGCTCTTTCCCCAGATCCAGGATTTAATGGAGGCTGCTCAGATGACTCCTGCAGATGTAACGGAACATCTCATGAAGAAGGCTGAGCAGCCCACCTCTGCCCTCCGAAACCTAATTCAAGCACTTCGCGAGGCCAAAGAAAGAATAGCCAGCGGCCCTTTGAAGGGCATATCAGAAGAAGAAAATGCTACTGCAACAGAGGAGCAAGTGTAA___TGTCAGAATCAATCATTGCTTAGAACTTCAATATCCACTAGAAAATATCAGTAGCAGAAGAGCAGAATTATTCAGAAGATACTTTAGATAAGCATCTGTTTTTCCCCCTTCGTTTTTGTCATCTG

Fln Alignment:

Contig8766___MEIWSNLGSIMASVLFIHTIAKEYLPPDFYEFFSKSLRSLIGILSPYISVVMxEESDGMKVSEVYEAAQTYLSVXXXXXXXXXXXXXXXXXXEFIFSMDRNEQIAEEYEGIKLWWVFHSSKPKQQVMFSWDSTSEEKRSYELTFHKKHKQKIFEQYLPHIMAEAKTLEVRNRYRKIYINQSSYADYEYRKRVWTPVVFDHPATFDTLALEPELKQDILEDLQRFSRREKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLIATTNKSIIVIEDIDCSLDLSDR--XXXXXXXXXXXXXXXXXSEPDEKE-NEESKVTLSGVLNFTDGLWSCCGSERLFVFTTNHIDRLDPALLRSGRMDKHILLSFCTFGAFKTLARNYLSMEDHELFPQIQDLMEAAQMTPADVTEHLMKKAEQPTSALRNLIQALREAKERIASGPLKGISEEENATATEEQV
D5A9D7______________MEVWSNLGSIMAAVIFIRTMAKEYLPPEFYGFLSKSLRSLIGIVSSHISVVIxEENDGMKVSEVYEAVQTYLSVRSCSAAKRLKLKKPQHNKEFTFSMARNEQIAEEYEGIKVWWVFHSSERKQQIMFSWNSTSEEKRYYKLTFHKKHKHIIFDQYLPHVMAEAKTLEIRSRYRKIYTNQSNSRDYEYRNRVWTPVVFDHPATFGTLALEPELKQDIMEDLQRFLRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLFTTTNKSIIVIEDIDCSLDLSDRKKKKKPQKDGEEDEKPSKPGKPDERESNEDSKVTLSGVLNFTDGLWSCCGSERLFVFTTNHVDRLDPALLRSGRMDKHILLTFCTFGAFKILARNYLSIEDHELFPDIGDLTEAAQMTPADVTEHLMKMADHPSRALENLIQALREAKERIATAALKGIS-EENASATEGQV

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
481	80		20		0.995493
482	80			20	0.995493
589		33	66		0.997452
591	33		66		0.997452
654		60		40	1.0
666			60	40	1.0
693		40	60		1.0
696	40		60		1.0
771	20	80			0.995493
772		60	20	20	0.99255
773		60	20	20	0.99255
774		80		20	0.995493
775			20	80	0.995493
776			80	20	0.995493
779	80	20			0.995493
782			80	20	0.995493
787	80			20	0.995493
792	83	16			0.994512
793		16	83		0.994512
796	83		16		0.994512
804	83			16	0.994512
806		83		16	0.994512
810		16	83		0.994512
811			83	16	0.994512
866	80		20		0.995493
981			50	50	1.0
1006	75			25	0.996473
1180	83		16		0.994512
1216		85		14	0.993533
1471		5		94	0.997984

SSRs (tot: 1)

Start position	End position	Sequence	Length
954	971	AAG AAG AAG AAG AAG AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain