SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8744

Length: 2707 nt

UniGene Fasta

>sp_v3.0_unigene8744
AACAGTTTGGGATGTTTCTTCTTCTAAGCAGGACGTGATCATTGGCGGTGCTACCTTTTGTCTTTTCAACAGCAAGAAACAACTTAAAACAGGACAGCAGAAACTTAGGCTTTGGCCGGGGAGACACGCAGATGGGTCAGTGCTTTCTACTACACCTGGAAAGGTGCCTAAGTCAGAGCGAGGAGAAATTGAGCGCTTGGAGAAGCTAGTCAACAAGTATGAATGTGGGCAGATTCCACGCATTGAGTGGCTAGATGAAATTGCTTTCAGAGCCATTGAGAACATCAAGGAGAGAGAAAGTAGATCCATTGGGACATCTCATTTACATCTTATTGTTCATCTAGTTGCTTTTGAGCACCGAGTTGCTTTCCAGGATCTGGGAGCAAATTATCTGTCACTATCTCCAATTTCTTCAACGAATGAGCTAGTAACTGTATGGGATCCAGAAGTAGGACGACTTAACCCCTCAGAAAATAAGCAAGTGAAGCTAGCCAGGAGTTTGACGAGGGGTGTAATTGACCGAGATTTGAAACCTAGTTCTAATGAAAGAAAGGAATTATTGAAGATATTGAAGTACCCTCCAACACGCACATTAAGAGGAGATGAAAGGCAACTTCTCTGGAAATTTCGGTTTTCTTTGGTTTCTGAGAAACGGGCTTTGACGAAGTTTCTTCGTTGCGTTGAGTGGAGTGATGCCCAGGAAGCCAAGCAGGCACTGGATTTGATGCGGCGGTGGGCACCTATTGACACTGCAGATGCATTGGAGCTATTGTCTCCTTTATTCAAGAGCGAAGAGGTGCGTGCATATGCAGTAAATGTCCTTGAACGAGCAGAGGATGAAGAACTGCAGTGCTACTTGCTTCAGCTTGTGCAGGCCCTCCGATTTGAGCGTTCTGAGAAATCACGACTTGCCCTTTTTCTTGTTCAGCGATCTGCACGTAATATTAATTTGGCTAGCTTCCTTCGTTGGTATGTCATGGTGGAGATCCATGATCCTACATATGCAAAAAGGTTCTACATTACATATGAAATTTTGGAAGACTATATTTTAAAGTACAACCCCGAGGGGAGAGAGAATGATGATGGCACTAAGATGTGGCAGAGTTTAGTGCGTCAGACAGAATTAATTGCTCAGTTGTGCACAATCATGAAAGATGTTAAAACTGTCCGTGGAACTCAGAGGAAAATTGAAAGGTTGCGACAATTACTTGCGGGTCTTATGAGTGAGCTCACCTACTTTGAGGAGCCAATACCTTTACCTTTGGATCCTAAAGTCCTAATCACTGGGATAATACCAGCGGAATCATCCCTATTCAAGAGCGCTTTACATCCTCTACGTTTGACTTTCAAAACTGCAGATGGTGGAAAATGCAAGGTCATGTTCAAAAAGGGTGATGACATCAGACAAGATCAATTGGTTATTCAAATGGTGTCACTGATGGATCGACTATTAAAGCTGGAAAATCTTGACCTACAACTAACTCCATATAAAGTATTGGCAACAGGACATGAAGAAGGAATGATAGAGTTCATCCCGTCAAATTCTTTAGCTCAAATTCTTTCAGAACATCGGAGTCTTGTAAACTATCTGCAGCAATATCATCCCGATGAAAATGGACCTTTTGGCATCACAGCAACATGTCTGGAAACATTTATTAAAAGCTGTGCTGGCTACTGTGTTATTACCTACATCCTTGGTGTCGGGGACAGGCATCTTGATAATCTTCTTTTGAGGGATGATGGAGGACTTTTTCATGTTGACTTTGGTTACATTCTTGGTAAAGATCCTAAACCATTTCCACCACCAATGAAACTGTGCAAGGAAATGGTAGAAGCAATGGGTGGAGCAGAGAGCCAATACTACGGGAGATTCAAATCTTATTGCTGCGAGGCCTACAACATCCTGAGAAAATCCAGTAACCTCATCCTGAATTTGTTCCATTTAATGGCTGGAGCAAGCATTCCTGCTATTGCATCTGATCCGGAGAAAGGGATTCTTAAGCTTCAAGAAAAGTTCCGTTTGGATTTGGATGATGAGGATGCAATACAGTTCTTCCAAACCCTTATTAATGAGAGTGTTAGCGCTTTATTCCCTCAAATGGTGGAGACAATTCATAGATGGGCTCAGTATTGGCGTTAAGATGGAGGATATACGTATTGTACATTGGCGTTAAAGATGGAGGATATACGTATTGTACAGATGTAAATCCATATCATTTCCATCATGAACTTGTCTTGTTCAATTGAAAATTTGTGTCATCTGCATCAAGGATTCACATTAGATATCATTATTGATAATGTTATGGTGATATTTCCAAGACGATTGGCAGACCTGCATTATTTGTACCTCATTCGGTCATCCCTGTAGAACATCAGCGTTGGAGTACTGTTGGCCAACATAGTATTTAATTGATTTTATGTTATCTGATTTATCATAAATCTGCATTTTTAGAACAGGAGATTCAGGAAATGGTTGGATAATCATTTTATCGGTGTATATAGAACCGGAAGCTCAGAGAGAAACACTTGGATGATCAGTTCTTAGGTGAAAGAGCTTCTTATGTAATTTCGTTGAAGCATAAAGTTGATTAAAATTTATCTTGTGTTATCTTAGAAAGGGGGAATAACCTAAAATACTTGGACTCTGTATTAAGAAATTCCTTACTGGATATTTTTCCTTGCAAGAAATACATCCTAGTTTCTTGGT

Ace file of the UniGene sp_v3.0_unigene8744

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoinositide 3-kinase n=1 Tax=Nicotiana tabacum RepID=Q4QXM0_TOBAC	-	-	0.0	76%
FL-Next	sp=Phosphatidylinositol 3-kinase, root isoform; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	77%
Sma3	Phosphatidylinositol 3-kinase	-	-	1.679e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol 3-kinase.	EC:2.7.1.137	-	7.028e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	7.028e-11	%
Sma3	Metabolic pathways	01100	7.028e-11	%
Sma3	Phosphatidylinositol signaling system	04070	7.028e-11	%

Source	Gene names
Sma3	At1g60490; CHLREDRAFT_196943; F8A5.4; GSVIVT00002733001; MICPUCDRAFT_42284; MICPUN_88102; OSJNBa0024A05.11; OSJNBa0074N12.38; OSTLU_34142; Os05g0180600; Os08g0307400; OsI_28732; OsJ_17344; OsJ_26836; Ot03g01870; P0453H11.6; PHATRDRAFT_30282; PHYPADRAFT_18

Source	GOs	Term	Type	Identity
Sma3	phosphatidylinositol 3-kinase complex	GO:0005942	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	1-phosphatidylinositol-3-kinase activity	GO:0016303	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	antigen processing and presentation	GO:0019882	Biological Process	-
Sma3	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	-
Sma3	phosphatidylinositol-mediated signaling	GO:0048015	Biological Process	-
Sma3	microgametogenesis	GO:0055046	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Phosphoinositide 3-kinase, C2	IPR002420	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Phosphatidylinositol 3-kinase, Vps34 type	IPR008290	-	-
Sma3	Phosphatidylinositol Kinase	IPR015433	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60490.1	ATVPS34, VPS34, PI3K vacuolar protein sorting 34 chr1:22285792-22290190 REVERSE LENGTH=814	75%
RefSeq	Arabidopsis thaliana	NP_176251.1	phosphatidylinositol 3-kinase VPS34 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002318628.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42347

Fln msg: your sequence is shorter than subject: 713 - 814

Fln protein: TVWDVSSSKQDVIIGGATFCLFNSKKQLKTGQQKLRLWPGRHADGSVLSTTPGKVPKSERGEIERLEKLVNKYECGQIPRIEWLDEIAFRAIENIKERESRSIGTSHLHLIVHLVAFEHRVAFQDLGANYLSLSPISSTNELVTVWDPEVGRLNPSENKQVKLARSLTRGVIDRDLKPSSNERKELLKILKYPPTRTLRGDERQLLWKFRFSLVSEKRALTKFLRCVEWSDAQEAKQALDLMRRWAPIDTADALELLSPLFKSEEVRAYAVNVLERAEDEELQCYLLQLVQALRFERSEKSRLALFLVQRSARNINLASFLRWYVMVEIHDPTYAKRFYITYEILEDYILKYNPEGRENDDGTKMWQSLVRQTELIAQLCTIMKDVKTVRGTQRKIERLRQLLAGLMSELTYFEEPIPLPLDPKVLITGIIPAESSLFKSALHPLRLTFKTADGGKCKVMFKKGDDIRQDQLVIQMVSLMDRLLKLENLDLQLTPYKVLATGHEEGMIEFIPSNSLAQILSEHRSLVNYLQQYHPDENGPFGITATCLETFIKSCAGYCVITYILGVGDRHLDNLLLRDDGGLFHVDFGYILGKDPKPFPPPMKLCKEMVEAMGGAESQYYGRFKSYCCEAYNILRKSSNLILNLFHLMAGASIPAIASDPEKGILKLQEKFRLDLDDEDAIQFFQTLINESVSALFPQMVETIHRWAQYWR*

Protein Length: 714

Fln nts: AACAGTTTGGGATGTTTCTTCTTCTAAGCAGGACGTGATCATTGGCGGTGCTACCTTTTGTCTTTTCAACAGCAAGAAACAACTTAAAACAGGACAGCAGAAACTTAGGCTTTGGCCGGGGAGACACGCAGATGGGTCAGTGCTTTCTACTACACCTGGAAAGGTGCCTAAGTCAGAGCGAGGAGAAATTGAGCGCTTGGAGAAGCTAGTCAACAAGTATGAATGTGGGCAGATTCCACGCATTGAGTGGCTAGATGAAATTGCTTTCAGAGCCATTGAGAACATCAAGGAGAGAGAAAGTAGATCCATTGGGACATCTCATTTACATCTTATTGTTCATCTAGTTGCTTTTGAGCACCGAGTTGCTTTCCAGGATCTGGGAGCAAATTATCTGTCACTATCTCCAATTTCTTCAACGAATGAGCTAGTAACTGTATGGGATCCAGAAGTAGGACGACTTAACCCCTCAGAAAATAAGCAAGTGAAGCTAGCCAGGAGTTTGACGAGGGGTGTAATTGACCGAGATTTGAAACCTAGTTCTAATGAAAGAAAGGAATTATTGAAGATATTGAAGTACCCTCCAACACGCACATTAAGAGGAGATGAAAGGCAACTTCTCTGGAAATTTCGGTTTTCTTTGGTTTCTGAGAAACGGGCTTTGACGAAGTTTCTTCGTTGCGTTGAGTGGAGTGATGCCCAGGAAGCCAAGCAGGCACTGGATTTGATGCGGCGGTGGGCACCTATTGACACTGCAGATGCATTGGAGCTATTGTCTCCTTTATTCAAGAGCGAAGAGGTGCGTGCATATGCAGTAAATGTCCTTGAACGAGCAGAGGATGAAGAACTGCAGTGCTACTTGCTTCAGCTTGTGCAGGCCCTCCGATTTGAGCGTTCTGAGAAATCACGACTTGCCCTTTTTCTTGTTCAGCGATCTGCACGTAATATTAATTTGGCTAGCTTCCTTCGTTGGTATGTCATGGTGGAGATCCATGATCCTACATATGCAAAAAGGTTCTACATTACATATGAAATTTTGGAAGACTATATTTTAAAGTACAACCCCGAGGGGAGAGAGAATGATGATGGCACTAAGATGTGGCAGAGTTTAGTGCGTCAGACAGAATTAATTGCTCAGTTGTGCACAATCATGAAAGATGTTAAAACTGTCCGTGGAACTCAGAGGAAAATTGAAAGGTTGCGACAATTACTTGCGGGTCTTATGAGTGAGCTCACCTACTTTGAGGAGCCAATACCTTTACCTTTGGATCCTAAAGTCCTAATCACTGGGATAATACCAGCGGAATCATCCCTATTCAAGAGCGCTTTACATCCTCTACGTTTGACTTTCAAAACTGCAGATGGTGGAAAATGCAAGGTCATGTTCAAAAAGGGTGATGACATCAGACAAGATCAATTGGTTATTCAAATGGTGTCACTGATGGATCGACTATTAAAGCTGGAAAATCTTGACCTACAACTAACTCCATATAAAGTATTGGCAACAGGACATGAAGAAGGAATGATAGAGTTCATCCCGTCAAATTCTTTAGCTCAAATTCTTTCAGAACATCGGAGTCTTGTAAACTATCTGCAGCAATATCATCCCGATGAAAATGGACCTTTTGGCATCACAGCAACATGTCTGGAAACATTTATTAAAAGCTGTGCTGGCTACTGTGTTATTACCTACATCCTTGGTGTCGGGGACAGGCATCTTGATAATCTTCTTTTGAGGGATGATGGAGGACTTTTTCATGTTGACTTTGGTTACATTCTTGGTAAAGATCCTAAACCATTTCCACCACCAATGAAACTGTGCAAGGAAATGGTAGAAGCAATGGGTGGAGCAGAGAGCCAATACTACGGGAGATTCAAATCTTATTGCTGCGAGGCCTACAACATCCTGAGAAAATCCAGTAACCTCATCCTGAATTTGTTCCATTTAATGGCTGGAGCAAGCATTCCTGCTATTGCATCTGATCCGGAGAAAGGGATTCTTAAGCTTCAAGAAAAGTTCCGTTTGGATTTGGATGATGAGGATGCAATACAGTTCTTCCAAACCCTTATTAATGAGAGTGTTAGCGCTTTATTCCCTCAAATGGTGGAGACAATTCATAGATGGGCTCAGTATTGGCGTTAA___GATGGAGGATATACGTATTGTACATTGGCGTTAAAGATGGAGGATATACGTATTGTACAGATGTAAATCCATATCATTTCCATCATGAACTTGTCTTGTTCAATTGAAAATTTGTGTCATCTGCATCAAGGATTCACATTAGATATCATTATTGATAATGTTATGGTGATATTTCCAAGACGATTGGCAGACCTGCATTATTTGTACCTCATTCGGTCATCCCTGTAGAACATCAGCGTTGGAGTACTGTTGGCCAACATAGTATTTAATTGATTTTATGTTATCTGATTTATCATAAATCTGCATTTTTAGAACAGGAGATTCAGGAAATGGTTGGATAATCATTTTATCGGTGTATATAGAACCGGAAGCTCAGAGAGAAACACTTGGATGATCAGTTCTTAGGTGAAAGAGCTTCTTATGTAATTTCGTTGAAGCATAAAGTTGATTAAAATTTATCTTGTGTTATCTTAGAAAGGGGGAATAACCTAAAATACTTGGACTCTGTATTAAGAAATTCCTTACTGGATATTTTTCCTTGCAAGAAATACATCCTAGTTTCTTGGT

Fln Alignment:

Contig8744___TVWDVSSSKQDVIIGGATFCLFNSKKQLKTGQQKLRLWPGRHADGSVLSTTPGKVPKSERGEIERLEKLVNKYECGQIPRIEWLDEIAFRAIENIKERESRSIGTSHLHLIVHLVAFEHRVAFQDLGANYLSLSPISSTNELVTVWDPEVGRLNPSENKQVKLARSLTRGVIDRDLKPSSNERKELLKILKYPPTRTLRGDERQLLWKFRFSLVSEKRALTKFLRCVEWSDAQEAKQALDLMRRWAPIDTADALELLSPLFKSEEVRAYAVNVLERAEDEELQCYLLQLVQALRFERSEKSRLALFLVQRSARNINLASFLRWYVMVEIHDPTYAKRFYITYEILEDYILKYNPEGRENDDGTKMWQSLVRQTELIAQLCTIMKDVKTVRG-TQRKIERLRQLLAGLMSELTYFEEPIPLPLDPKVLITGIIPAESSLFKSALHPLRLTFKTADGGKCKVMFKKGDDIRQDQLVIQMVSLMDRLLKLENLDLQLTPYKVLATGHEEGMIEFIPSNSLAQILSEHRSLVNYLQQYHPDENGPFGITATCLETFIKSCAGYCVITYILGVXXXXXXXXXXXXXXXXFHVDFGYILGKDPKPFPPPMKLCKEMVEAMGGAESQYYGRFKSYCCEAYNILRKSSNLILNLFHLMAGASIPAIASDPEKGILKLQEKFRLDLDDEDAIQFFQTLINESVSALFPQMVETIHRWAQYWR
P42347______________TVWDLSHGEG--LIGGATILLFNNKKQLKTGKQKLRLWAGKEADGTFPTSTPGKVPRHERGELERLEKLVNKYERGQIQRVDWLDRLTFKTMERIKERESLKNGSSHLYLVVDFCSFEHRVVFQESGANFLFPSPIASTNDIVVVWDPEVGKINPSEHKQLKLARSLTRGVIDRDLKPSSNERKSIQRILKYPPTRTLSGDERQLLWKFRFSLMSEKRALTKFLRCVEWSDVQEAKQALELMGKWEMIDVCDALELLSPVFESEEVRAYAVSVLERADDEELQCYLLQLVQALRFERSDKSRLSHFLVQRALRNIELASFLRWYVAVELYDPAYAKRFYCTYEILEENMMKIAAGVNGEEDGFKQWQSLVRQTELTAQLCSITREVRNVRGNTQKKIEKLRQLLSGLLSELTYFDEPIRSPLAPGVLIAGIVPSESSIFKSALHPLRLSFRTANGGTCKIIFKKGDDLRQDQLVVQMVSLMDRLLKLENLDLHLTPYKVLATGQDEGMLEFIPSRSLAQILSENRSIISYLQKFHPDDHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRNDGGLFHVDFGFILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFYLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEASIHFFQDLINESVSALFPQMVETIHRWAQYWR

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
771	75		25		0.996473
772		25		75	0.996473
792		75		25	0.996473
814	25		75		0.996473
859		25		75	0.996473
909	80		20		0.995493
933	83			16	0.994512
941	16		83		0.994512
949	83		16		0.994512
952	16			83	0.994512
1045		20		80	0.995493
1062		75	25		0.996473
1064		75		25	0.996473
1065		75		25	0.996473
1073			75	25	0.996473
1077	25		75		0.996473
1078	75		25		0.996473
1086		25		75	0.996473
1089		75		25	0.996473
1090	75		25		0.996473
1115	25		75		0.996473
1134			25	75	0.996473
1264			14	85	0.993533
1363	16		83		0.994512
1364	16		83		0.994512
1367			83	16	0.994512
1410	60		40		1.0
1438		40		60	1.0
1506	50		50		1.0
1509	50	50			1.0
1540	33		66		1.0
1624	20			80	0.995493
1654	75		25		0.996473
1666		75		25	0.996473
1691	25			75	0.996473
1695		25		75	0.996473
1697	25	75			0.996473
1698	25			75	0.996473
1857	20		80		0.995493
1859		60	40		1.0
1860	75			25	0.996473
1863	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain