SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8740

Length: 1949 nt

UniGene Fasta

>sp_v3.0_unigene8740
ACTGGTTTCCATTACGAGTTGATAAGAAGGAGCCATTACTTCTTTGTATTGCAGGCGCAGATAGTAGCTTTCGTCTCCTGGAAGTTAATACTCAAGGAAGCAAACCAGTTCAAGTATTGGAGGGGAAGGCTGTAATGAATAGATTTAGGCCAATGCCTTTGTGCTCACCAGTCTTACTTCCTCCTCCACATGCATTGGCTCTGCGTATGCTATTGCAATGGGGAGTCCAGCCTTCCTGGTTTGACATTGACAAAACATCCAGAGATACTGAGCATCTTGTACATACACCTGGAATGCCTTCAACCATAGACGAAACAGATTTTCGACATTATATGCTGGATACATCGTTTCCCTTGATTGGTGATACCGTTGTTCCAGAATTGCTACTAAAAATATTAGAACCTTATCGAAAAGCAGGTCGATTATTGGATAATGAAAGGGCAAAGACATATGCAGCTTTGCTGCATAAAGGCTGTACAGCAAGATTTGCTTTTGCTGCTGCACAGTTTGGGGACTTCTCAGAAGCTCTTTTCTGGTTACAGCTGCCCTATGTCCTTTCTTGTCTGACTGAGCAGTTACATGACAAATCTCTTCAACATAAAAGCCCTATTAAAGCCTCTTCTGAACCAAGCACATCAGATGAATTGCACACAAGGAGGTCAGTGGAGAGTGTGGCATCTTTGAAGGGAGCTAAACATGAGAAGTCAGCGTTTTCAGCATTAGGCTTGCAAGATTGTAGCTATTCCACATTGCAACTGACATATGGAGAATCTGATGTCTCGCCATCAAGCCAAGTATCTTTGCGTGCAAATGCCCTAGAAAGGATATCATGGCATGAAAAGTTACGTGGAGAAAATGCATTGCAAAAACGTGTTCACGAGCTTGTAGCTGTGGGGAGACTTGAAGATGCTGTAACATTGTTACTTTCTACCCCACCTGATAGCCCTTATTTCTATGTTGATGCTCTACGAGCTGTTGCCCTTTCATCTGCTGTCTCTTCAGCCTTGCACGAGCTTGCTGTTAAGGTAGTTGCAGCCAATTTGGTGGGCACTGACAAATCCTTGTCAGGAACACACTTACTTTGTGCTGTTGGCCGTTATCAAGAAGCCTGTTCACAGCTTCAAGATGCAGGCTGTTGGACAGATGCTGCAACGTTAGCTGCCACTCACCTCCAAGGATCTGATTATTCCAGGGTCTTGCAAAGGTGGGCTGATCATGTTCTTCAAAATGATCATAACATTTGGAGGGCAATGCTTTTGTATGTTGCTGCTGGTGCATTACATGAGGTTTTGGCAGTTCTTCGTGATGCACAAGAACCTGACACAGCAGCCATGTTTCTACTAGCATGTCACGAAATCAAAGTGAAAGTTGCATCCCAAAAATCTGGAGTTGAATGTAATGCATTGCCCAAATCAGACAGCCAAGTTCAAGGAAATGCCAACAGCTTGGATTTACCTGGTGATTTGAATCAACAAAAGGAAGATGTTTCAGTAGTTTGTGAGTATTATGGGCACTACCAAAGAACATTGGTTCGTTTATGCACAGATTTGGCACCGGTTTTGGATTGAACTCAATATTACATTGAAAAGAGAGGAACATAGGTTTTTGGGAGGATATCACTCATGATTGTTTTCTCTGTGATTCCTCTACATGATGACTTGTAGTCCTGAAATATTTTGGAAGGTGAAAATATTAACTCAATTTTTCAGGAGCTAGCACATGGATGACAACTGACGAGATTGTGCATTTCAAATGTTCTTTAGTCCAATGTATTCTGATTGATTGTAATGCACTCGTGCTGCTGTTATCACTCAACATTTCGAAGGAGGAGCTTTGAAGCTCTTCACTTTCACAGCTGTGATTGTGTAATTACCCTGTCAACTTGCATTATTAATTTTATTCAGTTTAATGATTTATTTGTACAAGTGGACAAGAATTAATGCGTATTC

Ace file of the UniGene sp_v3.0_unigene8740

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SMG7_RICCO	-	-	0.0	52%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	58%

Source	Gene names
Sma3	At2g26610; GSVIVT00016924001; OSJNBa0026E05.2; OSJNBa0081C13.26; Os02g0137000; OsJ_05300; PHYPADRAFT_189719; PHYPADRAFT_20149; POPTRDRAFT_779734; RCOM_1074870; T4P3.9;

Source	InterPros	Term	Type	e value	Identity
Sma3	WD40 repeat	IPR001680	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G33530.3	Transducin family protein / WD-40 repeat family protein chr3:14085354-14093449 FORWARD LENGTH=1376	54%
RefSeq	Arabidopsis thaliana	NP_189790.2	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002325208.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SMG7

Fln msg: your sequence is shorter than subject: 522 - 1357

Fln protein: WFPLRVDKKEPLLLCIAGADSSFRLLEVNTQGSKPVQVLEGKAVMNRFRPMPLCSPVLLPPPHALALRMLLQWGVQPSWFDIDKTSRDTEHLVHTPGMPSTIDETDFRHYMLDTSFPLIGDTVVPELLLKILEPYRKAGRLLDNERAKTYAALLHKGCTARFAFAAAQFGDFSEALFWLQLPYVLSCLTEQLHDKSLQHKSPIKASSEPSTSDELHTRRSVESVASLKGAKHEKSAFSALGLQDCSYSTLQLTYGESDVSPSSQVSLRANALERISWHEKLRGENALQKRVHELVAVGRLEDAVTLLLSTPPDSPYFYVDALRAVALSSAVSSALHELAVKVVAANLVGTDKSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLQGSDYSRVLQRWADHVLQNDHNIWRAMLLYVAAGALHEVLAVLRDAQEPDTAAMFLLACHEIKVKVASQKSGVECNALPKSDSQVQGNANSLDLPGDLNQQKEDVSVVCEYYGHYQRTLVRLCTDLAPVLD*

Protein Length: 523

Fln nts: ACTGGTTTCCATTACGAGTTGATAAGAAGGAGCCATTACTTCTTTGTATTGCAGGCGCAGATAGTAGCTTTCGTCTCCTGGAAGTTAATACTCAAGGAAGCAAACCAGTTCAAGTATTGGAGGGGAAGGCTGTAATGAATAGATTTAGGCCAATGCCTTTGTGCTCACCAGTCTTACTTCCTCCTCCACATGCATTGGCTCTGCGTATGCTATTGCAATGGGGAGTCCAGCCTTCCTGGTTTGACATTGACAAAACATCCAGAGATACTGAGCATCTTGTACATACACCTGGAATGCCTTCAACCATAGACGAAACAGATTTTCGACATTATATGCTGGATACATCGTTTCCCTTGATTGGTGATACCGTTGTTCCAGAATTGCTACTAAAAATATTAGAACCTTATCGAAAAGCAGGTCGATTATTGGATAATGAAAGGGCAAAGACATATGCAGCTTTGCTGCATAAAGGCTGTACAGCAAGATTTGCTTTTGCTGCTGCACAGTTTGGGGACTTCTCAGAAGCTCTTTTCTGGTTACAGCTGCCCTATGTCCTTTCTTGTCTGACTGAGCAGTTACATGACAAATCTCTTCAACATAAAAGCCCTATTAAAGCCTCTTCTGAACCAAGCACATCAGATGAATTGCACACAAGGAGGTCAGTGGAGAGTGTGGCATCTTTGAAGGGAGCTAAACATGAGAAGTCAGCGTTTTCAGCATTAGGCTTGCAAGATTGTAGCTATTCCACATTGCAACTGACATATGGAGAATCTGATGTCTCGCCATCAAGCCAAGTATCTTTGCGTGCAAATGCCCTAGAAAGGATATCATGGCATGAAAAGTTACGTGGAGAAAATGCATTGCAAAAACGTGTTCACGAGCTTGTAGCTGTGGGGAGACTTGAAGATGCTGTAACATTGTTACTTTCTACCCCACCTGATAGCCCTTATTTCTATGTTGATGCTCTACGAGCTGTTGCCCTTTCATCTGCTGTCTCTTCAGCCTTGCACGAGCTTGCTGTTAAGGTAGTTGCAGCCAATTTGGTGGGCACTGACAAATCCTTGTCAGGAACACACTTACTTTGTGCTGTTGGCCGTTATCAAGAAGCCTGTTCACAGCTTCAAGATGCAGGCTGTTGGACAGATGCTGCAACGTTAGCTGCCACTCACCTCCAAGGATCTGATTATTCCAGGGTCTTGCAAAGGTGGGCTGATCATGTTCTTCAAAATGATCATAACATTTGGAGGGCAATGCTTTTGTATGTTGCTGCTGGTGCATTACATGAGGTTTTGGCAGTTCTTCGTGATGCACAAGAACCTGACACAGCAGCCATGTTTCTACTAGCATGTCACGAAATCAAAGTGAAAGTTGCATCCCAAAAATCTGGAGTTGAATGTAATGCATTGCCCAAATCAGACAGCCAAGTTCAAGGAAATGCCAACAGCTTGGATTTACCTGGTGATTTGAATCAACAAAAGGAAGATGTTTCAGTAGTTTGTGAGTATTATGGGCACTACCAAAGAACATTGGTTCGTTTATGCACAGATTTGGCACCGGTTTTGGATTGA___ACTCAATATTACATTGAAAAGAGAGGAACATAGGTTTTTGGGAGGATATCACTCATGATTGTTTTCTCTGTGATTCCTCTACATGATGACTTGTAGTCCTGAAATATTTTGGAAGGTGAAAATATTAACTCAATTTTTCAGGAGCTAGCACATGGATGACAACTGACGAGATTGTGCATTTCAAATGTTCTTTAGTCCAATGTATTCTGATTGATTGTAATGCACTCGTGCTGCTGTTATCACTCAACATTTCGAAGGAGGAGCTTTGAAGCTCTTCACTTTCACAGCTGTGATTGTGTAATTACCCTGTCAACTTGCATTATTAATTTTATTCAGTTTAATGATTTATTTGTACAAGTGGACAAGAATTAATGCGTATTC

Fln Alignment:

Contig8740___WFPLRVDKKEPLLLCIAGADSSFRLLEVNTQGSKPVQVLEGKAVMNRFRPMPLCSXXXXXXXXXXXXXXXXQWGVQPSWFDIDKTSRDTEHLVHTPGMPSTIDETDFRHYMLDTSFPLIGDTVVPELLLKILEPYRKAGRLLDNERAKTYAALLHKGCTARFAFAAAQFGDFSEALFWLQLPYVLSCLTEQLHDKSLQHKSPIKASSEPSTSDELHTRRSVESVASLKGAKHEKSAFSALGLQDCSYSTLQLTYGESDVSPSSQVSLRANALERISWHEKLRGENALQKRVHELVAVGRLEDAVTLLLSTPPDSPYFYXXXXXXXXXXXXXXXXXXXXXXKVVAANLVGTDKSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLQGSDYSRVLQRWADHVLQNDHNIWRAMLLYVAAGALHEVLAVLRDAQEPDTAAMFLLACHEIKVKVASQKSGVECNALPKSDSQVQGNANSLDLPGDLNQQKEDVSVVCEYYGHYQRTLVRLCTDLAPVLD
B9SMG7______________WLPVRTDKNDPLVLCIAGADSSFRLVEVNVNDKKPGYGLHSRAIKERFRPMPICSPILFPTPHALALRMILQLGVEPSWFNTCGTTID-KRLHSIPG--TALPAADLRSYMID--LPRIGDSVVPEMLLKVLEPYRKEGCILDDERARLYATIVHKGYAVRFAFAAAVFGETSEAIFWLQLPQALKHLMNKLVNKSPQ-KVPISALI-PDLDDTAMLNRIASKGKSVTGPEKRDS------LHKCQFRSMAF----------KQEELWENANERIPWHEKLEGEEAIQNRVHELVSVGNLEAAVSLLLSTSPDSSYFYANALRAVALSSAVSRSLHELAVKVVAANMVRTDRSLSGTHLLCAVGRHQEACSQLQDAGCWTDAATLAATHLRGSDYARVLQRWAEHVLRAEHNIWRALVLFVAAGALQEALAALREAQQPDTAAMFILACREIHEEIISNLGNSDDESGTVKDTQV-------DLPG-LNPENEDVIAVGEYFGQYQRKLVHLCMDSQPFSD

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
1222	10			90	0.90298
1255	11		88		0.923564
1257	11			88	0.923564
1269	14	85			0.993533
1270		14		85	0.993533
1271	14		85		0.993533
1272		85		14	0.993533
1302	14			85	0.993533
1303	12			87	0.992554
1304		87	12		0.992554
1306			12	75	0.975346
1310			75	25	1.0
1315	75			25	1.0
1500			14	85	0.993533
1501			85	14	0.993533
1562		20		80	0.999996
1565		10	90		0.90298
1567	80	20			0.999996
1569			11	88	0.923564
1570			88	11	0.923564
1571	88	11			0.923564
1642			71	28	1.0
1709		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain