SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8738

Length: 3010 nt

UniGene Fasta

>sp_v3.0_unigene8738
ATGGGGGGTAGAGCCCAGAAAGGGTGCGGGGTATCAAAATCTTGACTAAACTTATACCAGTACAAGTTTACAGAGCACAACAGACCGAAGAGCAGAACTGCAAGGATGGCTGACCTGGGCTTTGAAGAAGCGGACGAGGTCGTCGAAAACTTCCTGGAAACCCAAAGCTCCGACAACAACTACATGGTCGGCTTTGTCCTGGCCAATGTCGTGGGATTGCAGTACTACACGGGCACCATCAATGGCCGTGAAATGATTCGACTAGTTCGCGAGCCTGAAAATCGGCACGACCCCAACGCCATCAAAGTCCTCAACATGAGCGGCCAGCAGGTCGGTTACATCGAGCGCGTTGTGGCGCTGGCACTGGCGTCCCATGTTGATCAATCCCTAATTTTAATTGAAGGAATCGTGTCCAGGGCTCTGCATAAAGGTGCTTACAAGTTACCTTGTCAAATCTACATTTTCAGTCGCAGGGATTCGATGGGCATGGTTCTTCAGTTGCTTAAAGGGGCCGGATTGAATGTTATTACTGCGGAGGACCAAGAGTTTTTAACGGCGGAATCCATTGCTGCAAAAGAAATATATGAAGATCCAGGGGTGAAGGAGGTTAGAAGGGTCGATGATATCTTTGGGTCTCTTAATAATCCCAAGAAGAGGCAGTCGATGGAGGCTTGCGAGCTTGTAACTTCGACACTGTTACAGCACCAGAAGGAGGCATTGGCTTGGATGGTGCAGAGGGAGAATTCTTCCGAACTTCCACCATTTTGGGATGTTTGTGACAAGACGAGTAAGTCACAGCAGCTCAGATATAAGAATGTTTTGACAAATTTTGAGACGAATGGAAGGCCGAAGCCTTTGAGAGGTGGAATTTTGGCGGATGATATGGGGCTTGGTAAGACGTTGTCATTGCTTTCGCTCATTGCAACGAACCGTCCCGGTGCCAAGCTCCCTCCTGTTGTAGATATTGCTCCCTCTTCCGAAAGCTCTGATGCAGAAAACCCTAAAAACCCTGATTCTGATAACTTTAAGAACCCTAATACTGAAAATCCCAAGAGCCCTAATCGCAAAGGGGCCAAGAGAAAGAGGAGTGGCAGTGATGGCTCTAGAAGCGTTACCATGGGAAAGGGTCAAGCGCACAAAAGTTGCCAGGAAATTGTATTTGAGCCCCCAGATCCCGATGGGCCCAGGGCAACCCTCGTTGTCTGCCCGCCCTCCGTGCTTTCGAACTGGGTGGATCAGCTCGAGGAACACACTAAGCGGGGAAGCTTGAAAGTTTATCTATACCATGGAGGTGGTCGCATGAAGGAAGCAAACGAAATATCTAAATTTGATATTGTTCTGACAACCTATAGTACCCTTGGTTCAGAATTAAATAATCTGAGCTCACCTATCAAGGAGATCAAGTGGTTGAGAATAATTTTGGATGAGGCACATTTCATAAAAAATGCTGGTACTAAACAAGCGAAGGCGGCAATAGCTTTAAATGCTGAAAGAAGGTGGGCCGTTACTGGTACTCCGATTCAAAACACGGCGTTTGATTTGTTTACACTGATGGCATTCCTGCATTTTGAACCATTTTCAATCAAATCCTATTGGAACAGCTTAGTTCAACGCCCGCTATCTCAAGGCAACAAGAGTGGTTGTTCACGCTTACAGGCTTTATTGGAGACCGTTGCTCTCCGAAGGACCAAAGATATGAAAATCAATGGACAGTGCTTAGTGGAACTTCCACCTAAATATGTGCAGATCCATCCGGTAGAACTGTCTCATGAGGAGCGTGAACTCTACAATAATGTGGAAACAGAAGGCAGAAAAGTGGTTCAAAACTTCATTAATTCAGGCACCGTGCTAAATAATTATTCTTCTATCCTTCAGATAATTCTACGGCTACGTCAAATTTGTGATGATGCATTGTTGTGCCCATCTGATGTGGAGTCATTGTTTTCGTCTTTCAAATTAGAAGATGCTTCAGGCAATCCCAATTTGCTGAAGAAATTACTTTCAGTTTTGCAAGCTGGAGATGACTTTGACTGTCCAGTATGTTTATCACCACCGTCAGAGGCTATCATAACCATCTGTTCACATGTGTTCTGTAAGAAGTGCATTGAGAAGATATTGAAACATCTAAAGCCACAGTGTCCATTGTGCCGTAAGCAGCTTACAACATCTGATCTTTTTAGTTCACCAAAGGTTGATGATGAGAATGAAGTTACATCAGAAAAAGTAGTCAAAACTGGTTCAAAAATTAATGCATTAATATCTCTATTGAAAGAGTCCCAGGATCATGATCCAACTACAAAATCTGTTGTATTTTCACAGTTTCGAAAAATGCTGGATCTCTTGCAGGAACCTTTGGAAAAGTCAGGTTTCAAGTTTGTCCGTTTGGATGGGTCTATGCCTCCAAAGAAGCGAGCTGCATCCATTACTGCATTCATGTCAAACAAACCAAGCAGCCCAACCATCCTCTTGGCAAGTTTGAAAGCTGCAGGAGTAGGGATAAATCTAACTGCTGCTTCTGATGTCTACATGTTTGACCCTTGGTGGAATCCTGCCGTGGAAGATCAAGCAATGGATCGAATACACAGAATTGGGCAGACAAGGTCTGTGAGAGTGCTCAGGTTAGTTGTAAAGGACAGCATTGAGGAGCGCATATTAGAGATGCAAGATGGGAAACGGAAGTTAGCTAGCTCTGCATTCAAAGACAAGTCTGACAAGGAGCAACGCAAAATGCGTGTGGAAGATGTACAGCGTCTTATGCGGTTATCATAGATTGAATTCGTGTAGTGTAATTCTACACTTCGTTTTTGTAGGTGTCAAGATCGTGACTGCCTTTTGGCCTGAATAGGGTAATTCATTGTCCAGATGAAGAATACTTGTGATTCCCCAAGCATTTTGTACCAAGGAATATTCAAGTCAAATATTCCTTTTGGATATTATCTCTATTTTACATAAGATAACATTAAAAATAGTGACTTGCATAATATAAATGCCATTGATAGCCTTTAAAGTA

Ace file of the UniGene sp_v3.0_unigene8738

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 n=3 Tax=Arabidopsis RepID=SM3L1_ARATH	-	-	0.0	48%
FL-Next	tr=SNF2 domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	49%
Sma3	Chromatin remodeling complex subunit	-	-	2.356e-11	-

Source	Gene names
Sma3	At5g05130; CHR1531; CHR931; CHR942; CHR946; CHR956; GSVIVT00023276001; MUG13.1; MtrDRAFT_AC157502g7v2; OJ1003_C06.108; Os07g0642400; OsI_27065; OsJ_25316; P0524G08.124; PHYPADRAFT_211797; POPTRDRAFT_255250; POPTRDRAFT_264778; POPTRDRAFT_418053; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05130.1	DNA/RNA helicase protein chr5:1512173-1514918 FORWARD LENGTH=862	48%
RefSeq	Arabidopsis thaliana	NP_196132.2	DNA/RNA helicase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002308876.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7LYB0

Fln msg:

Fln protein: MADLGFEEADEVVENFLETQSSDNNYMVGFVLANVVGLQYYTGTINGREMIRLVREPENRHDPNAIKVLNMSGQQVGYIERVVALALASHVDQSLILIEGIVSRALHKGAYKLPCQIYIFSRRDSMGMVLQLLKGAGLNVITAEDQEFLTAESIAAKEIYEDPGVKEVRRVDDIFGSLNNPKKRQSMEACELVTSTLLQHQKEALAWMVQRENSSELPPFWDVCDKTSKSQQLRYKNVLTNFETNGRPKPLRGGILADDMGLGKTLSLLSLIATNRPGAKLPPVVDIAPSSESSDAENPKNPDSDNFKNPNTENPKSPNRKGAKRKRSGSDGSRSVTMGKGQAHKSCQEIVFEPPDPDGPRATLVVCPPSVLSNWVDQLEEHTKRGSLKVYLYHGGGRMKEANEISKFDIVLTTYSTLGSELNNLSSPIKEIKWLRIILDEAHFIKNAGTKQAKAAIALNAERRWAVTGTPIQNTAFDLFTLMAFLHFEPFSIKSYWNSLVQRPLSQGNKSGCSRLQALLETVALRRTKDMKINGQCLVELPPKYVQIHPVELSHEERELYNNVETEGRKVVQNFINSGTVLNNYSSILQIILRLRQICDDALLCPSDVESLFSSFKLEDASGNPNLLKKLLSVLQAGDDFDCPVCLSPPSEAIITICSHVFCKKCIEKILKHLKPQCPLCRKQLTTSDLFSSPKVDDENEVTSEKVVKTGSKINALISLLKESQDHDPTTKSVVFSQFRKMLDLLQEPLEKSGFKFVRLDGSMPPKKRAASITAFMSNKPSSPTILLASLKAAGVGINLTAASDVYMFDPWWNPAVEDQAMDRIHRIGQTRSVRVLRLVVKDSIEERILEMQDGKRKLASSAFKDKSDKEQRKMRVEDVQRLMRLS*

Protein Length: 889

Fln nts: ATGGGGGGTAGAGCCCAGAAAGGGTGCGGGGTATCAAAATCTTGACTAAACTTATACCAGTACAAGTTTACAGAGCACAACAGACCGAAGAGCAGAACTGCAAGG_-_ATGGCTGACCTGGGCTTTGAAGAAGCGGACGAGGTCGTCGAAAACTTCCTGGAAACCCAAAGCTCCGACAACAACTACATGGTCGGCTTTGTCCTGGCCAATGTCGTGGGATTGCAGTACTACACGGGCACCATCAATGGCCGTGAAATGATTCGACTAGTTCGCGAGCCTGAAAATCGGCACGACCCCAACGCCATCAAAGTCCTCAACATGAGCGGCCAGCAGGTCGGTTACATCGAGCGCGTTGTGGCGCTGGCACTGGCGTCCCATGTTGATCAATCCCTAATTTTAATTGAAGGAATCGTGTCCAGGGCTCTGCATAAAGGTGCTTACAAGTTACCTTGTCAAATCTACATTTTCAGTCGCAGGGATTCGATGGGCATGGTTCTTCAGTTGCTTAAAGGGGCCGGATTGAATGTTATTACTGCGGAGGACCAAGAGTTTTTAACGGCGGAATCCATTGCTGCAAAAGAAATATATGAAGATCCAGGGGTGAAGGAGGTTAGAAGGGTCGATGATATCTTTGGGTCTCTTAATAATCCCAAGAAGAGGCAGTCGATGGAGGCTTGCGAGCTTGTAACTTCGACACTGTTACAGCACCAGAAGGAGGCATTGGCTTGGATGGTGCAGAGGGAGAATTCTTCCGAACTTCCACCATTTTGGGATGTTTGTGACAAGACGAGTAAGTCACAGCAGCTCAGATATAAGAATGTTTTGACAAATTTTGAGACGAATGGAAGGCCGAAGCCTTTGAGAGGTGGAATTTTGGCGGATGATATGGGGCTTGGTAAGACGTTGTCATTGCTTTCGCTCATTGCAACGAACCGTCCCGGTGCCAAGCTCCCTCCTGTTGTAGATATTGCTCCCTCTTCCGAAAGCTCTGATGCAGAAAACCCTAAAAACCCTGATTCTGATAACTTTAAGAACCCTAATACTGAAAATCCCAAGAGCCCTAATCGCAAAGGGGCCAAGAGAAAGAGGAGTGGCAGTGATGGCTCTAGAAGCGTTACCATGGGAAAGGGTCAAGCGCACAAAAGTTGCCAGGAAATTGTATTTGAGCCCCCAGATCCCGATGGGCCCAGGGCAACCCTCGTTGTCTGCCCGCCCTCCGTGCTTTCGAACTGGGTGGATCAGCTCGAGGAACACACTAAGCGGGGAAGCTTGAAAGTTTATCTATACCATGGAGGTGGTCGCATGAAGGAAGCAAACGAAATATCTAAATTTGATATTGTTCTGACAACCTATAGTACCCTTGGTTCAGAATTAAATAATCTGAGCTCACCTATCAAGGAGATCAAGTGGTTGAGAATAATTTTGGATGAGGCACATTTCATAAAAAATGCTGGTACTAAACAAGCGAAGGCGGCAATAGCTTTAAATGCTGAAAGAAGGTGGGCCGTTACTGGTACTCCGATTCAAAACACGGCGTTTGATTTGTTTACACTGATGGCATTCCTGCATTTTGAACCATTTTCAATCAAATCCTATTGGAACAGCTTAGTTCAACGCCCGCTATCTCAAGGCAACAAGAGTGGTTGTTCACGCTTACAGGCTTTATTGGAGACCGTTGCTCTCCGAAGGACCAAAGATATGAAAATCAATGGACAGTGCTTAGTGGAACTTCCACCTAAATATGTGCAGATCCATCCGGTAGAACTGTCTCATGAGGAGCGTGAACTCTACAATAATGTGGAAACAGAAGGCAGAAAAGTGGTTCAAAACTTCATTAATTCAGGCACCGTGCTAAATAATTATTCTTCTATCCTTCAGATAATTCTACGGCTACGTCAAATTTGTGATGATGCATTGTTGTGCCCATCTGATGTGGAGTCATTGTTTTCGTCTTTCAAATTAGAAGATGCTTCAGGCAATCCCAATTTGCTGAAGAAATTACTTTCAGTTTTGCAAGCTGGAGATGACTTTGACTGTCCAGTATGTTTATCACCACCGTCAGAGGCTATCATAACCATCTGTTCACATGTGTTCTGTAAGAAGTGCATTGAGAAGATATTGAAACATCTAAAGCCACAGTGTCCATTGTGCCGTAAGCAGCTTACAACATCTGATCTTTTTAGTTCACCAAAGGTTGATGATGAGAATGAAGTTACATCAGAAAAAGTAGTCAAAACTGGTTCAAAAATTAATGCATTAATATCTCTATTGAAAGAGTCCCAGGATCATGATCCAACTACAAAATCTGTTGTATTTTCACAGTTTCGAAAAATGCTGGATCTCTTGCAGGAACCTTTGGAAAAGTCAGGTTTCAAGTTTGTCCGTTTGGATGGGTCTATGCCTCCAAAGAAGCGAGCTGCATCCATTACTGCATTCATGTCAAACAAACCAAGCAGCCCAACCATCCTCTTGGCAAGTTTGAAAGCTGCAGGAGTAGGGATAAATCTAACTGCTGCTTCTGATGTCTACATGTTTGACCCTTGGTGGAATCCTGCCGTGGAAGATCAAGCAATGGATCGAATACACAGAATTGGGCAGACAAGGTCTGTGAGAGTGCTCAGGTTAGTTGTAAAGGACAGCATTGAGGAGCGCATATTAGAGATGCAAGATGGGAAACGGAAGTTAGCTAGCTCTGCATTCAAAGACAAGTCTGACAAGGAGCAACGCAAAATGCGTGTGGAAGATGTACAGCGTCTTATGCGGTTATCATAG___ATTGAATTCGTGTAGTGTAATTCTACACTTCGTTTTTGTAGGTGTCAAGATCGTGACTGCCTTTTGGCCTGAATAGGGTAATTCATTGTCCAGATGAAGAATACTTGTGATTCCCCAAGCATTTTGTACCAAGGAATATTCAAGTCAAATATTCCTTTTGGATATTATCTCTATTTTACATAAGATAACATTAAAAATAGTGACTTGCATAATATAAATGCCATTGATAGCCTTTAAAGTA

Fln Alignment:

Contig8738___QSSD---NNYMVGFVLANVVGLQYYTGTINGREMIRLVREPENRHDPNAIKVLNMSGQQVGYIERVVALALASHVDQSLILIEGIVSRAL-HKGAYKLPCQIYIFSRRDSMGMVLQLLKGAGLNVITAEDQEFLTAESIAAKEIYEDPGVKEVRRVDDIFGSLN-NPKKRQSMEACE----LVTSTLLQHQKEALAWMVQRENSSELPPFWDVCDKTSKSQQLRYKNVLTNFETNGRPKPLRGGILADDMGLGKTLSLLSLIATNRPGAKLPPVVDIAPSSESSDAENPKNPDSDNFKNPNTENPKSPNXXXXXXXXXXXXXXXXVTMGKGQAHKSCQEIVFEPPDPDG----PRATLVVCPPSVLSNWVDQLEEHTKRGSLKVYLYHGGGRMKEANEISKFDIVLTTYSTLGSELNNLSSPIKEIKWLRIILDEAHFIKNAGTKQAKAAIALNAERRWAVTGTPIQNTAFDLFTLMAFLHFEPFSIKSYWNSLVQRPLSQGNKSGCSRLQALLETVALRRTKDMKINGQCLVELPPKYVQIHPVELSHEERELYNNVETEGRKVVQNFINSGTVLNNYSSXXXXXXXXXXXCDDALLCPSDVESLFSSFKLEDASGNPNLLKKLLSVLQAGDDFDCPVCLSPPSEAIITICSHVFCKKCIEKILKHLKPQCPLCRKQLTTSDLFSSPKVDDENEVTSEKVVKT---GSKINALISLLKESQDHDPTTKSVVFSQFRKMLDLLQEPLEKSGFKFVRLDGSMPPKKRAASITAFMSNKPSSPTILLASLKAAGVGINLTAASDVYMFDPWWNPAVEDQAMDRIHRIGQTRSVRVLRLVVKDSIEERILEMQDGKRKLASSAFKDKSDKEQRKMRVEDVQRLMRL
D7LYB0______________QSQDCVSESYLIGFVIANIVGLKYYSGRINGREMVGLVREPLNPYDNNAIRVLNTRSEQVGHIERTVAAVLAPLIDSHTIIVEGIVPNTRSNSNRFKIPCQIHVFAKLEASSTVKSTISRGGLVLISDSDTAFGLSEAVVVKE---QMGNGDKKSVDKIFKLVDRNVKLKGKLVAVEPPREVIKSELFAHQKEGLGWLLYREKSGELPPFWEEKDG-------EFLNTLTNYRSDKRPEPLRGGVFADDMGLGKTLTLLSLIAFDRYGN----------ASTSTPTKEPLDVEGDKIEKKGKKR------------------------GRGKSSESRTRKKLKPDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVQGSLKVYMYHGGERTDDVNELMKYDLVLTTYSTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVSKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQVLMATISLRRTKE-----KSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDISLCPPELRSFTTSTSVEDVIDKPELLQKLIAVLQDGEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNAPPPPPDDSNTDGEDTKSSTKSSKVSALLSLLIASRQESPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTLKKRTQVIGEFGNPELTGPVVLLASLKASGAGINLTAASRVYLLDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARDSIEERVLELQQKKKNLANEAFKRRQKKDEREVNVEDVIALMSL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
992		60		40	1.0
2540	88	11			0.923564
2585	10		90		0.90298
2802	88		11		0.923564
2824	16		83		0.994512
2825		16		83	0.994512
2826	14		85		0.993533
2828		85		14	0.993533
2948	33			66	0.997452
2949		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain