SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8706

Length: 1756 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8706

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	auxin efflux carrier family protein [Arabidopsis thaliana] dbj\|BAB10403.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED98134.1\| auxin efflux carrier family protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65980.1	Auxin efflux carrier family protein chr5:26392444-26394232 FORWARD LENGTH=395	50%
RefSeq	Arabidopsis thaliana	NP_201399.1	auxin efflux carrier family protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002306421.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRA4

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: PCLIFEKESDLVIVSQALNIKAVS*KDRSIMAFLALLEVASMPVLRILLISGLGAFLATSYVDVLTADARKHVNKVIFIVFTPALMFASLSKSVTLDNIISWWYMPVNLLLTFLIGGFYGWIVVKITRTPKHLSGLVIGNCAAGNVGNLLLIIIPAICEQKASPFGDAAVCMDYGMAYSSFSMAIGAIYIWSIVYNIVRSSSCQRDEETQIEARVEEKIPSKDRSNTRLQSNLLQGVHTEVSNSTGKNASLFPSETQDFNKEFGKGNLFQRHLSNFTNGLQLSEILAPPTIGAVVGFIVGAIPQTKGLFVGPNPPLQVIQDSITLLGDGTIPTITLILGGNLTKGLQSSTVKPSIIIGIILVRFLILPLTGILIVKGATYLGMAQPDLLYQFILLIQFALPPAMNIGTMTQLFGVGESECSVIFLWTYLLAAIAITGWSTLYMWLLS*

Protein Length: 449

Fln nts: ATGGGGTGGCCAATTGGTTCGCCACTTATTGTTAAGTCAAGTGCTCAGGATCTTCAATTAAAGTGCGTCATGTGTTGAGGATCTTCAATTAAAGTGCATTCATGGAATGCGGGTTACTAGCC_-_ATGCCTTATATTTGAGAAAGAAAGTGATCTTGTGATCGTCAGCCAGGCGCTCAATATCAAAGCAGTAAGCTAAAAAGATCGATCGATCATGGCGTTCTTGGCTCTGCTGGAAGTGGCGTCCATGCCGGTTCTGCGGATTCTGCTAATCAGCGGCCTCGGGGCCTTTCTCGCAACTTCTTACGTGGATGTTCTTACTGCGGATGCCCGTAAGCATGTGAATAAGGTGATATTTATTGTATTCACACCAGCTTTGATGTTTGCAAGCTTGTCCAAATCAGTAACACTTGACAATATCATCTCTTGGTGGTACATGCCGGTTAACCTTCTTCTAACATTTTTGATTGGAGGTTTCTATGGGTGGATCGTGGTGAAAATTACAAGAACTCCAAAGCATTTAAGTGGCCTTGTTATTGGAAACTGTGCTGCAGGAAATGTTGGAAATTTGCTTCTGATTATCATTCCTGCAATTTGTGAACAAAAAGCCAGTCCTTTTGGAGATGCTGCTGTTTGCATGGACTATGGAATGGCTTATTCATCCTTTTCTATGGCGATTGGGGCCATCTACATCTGGTCTATTGTCTACAATATTGTGAGATCATCATCGTGTCAAAGGGATGAAGAAACTCAAATAGAAGCTAGGGTTGAAGAGAAGATCCCCAGTAAGGACCGTTCAAATACTAGATTGCAATCTAATCTTCTACAGGGGGTCCATACAGAAGTGTCAAATTCTACTGGAAAAAATGCGTCTCTGTTTCCATCTGAGACACAGGATTTTAACAAAGAGTTTGGCAAAGGAAATCTTTTCCAACGCCATTTAAGTAACTTTACGAATGGACTTCAACTCTCAGAGATATTGGCACCTCCAACAATTGGAGCTGTTGTGGGGTTTATTGTTGGAGCAATACCCCAAACAAAAGGACTATTTGTTGGCCCAAATCCTCCTCTTCAAGTTATCCAAGATTCCATTACCTTATTGGGAGATGGGACAATTCCAACAATTACACTTATACTTGGAGGAAATTTAACCAAAGGGTTACAGTCTTCAACAGTAAAGCCTTCGATTATTATAGGGATTATCCTTGTGCGGTTTTTGATTCTCCCCTTGACTGGAATATTGATAGTTAAAGGTGCAACCTATCTTGGGATGGCACAACCAGACTTACTGTATCAATTCATCTTGTTGATACAGTTTGCACTGCCCCCTGCTATGAATATTGGAACGATGACACAATTATTTGGTGTTGGCGAGAGCGAGTGCTCTGTTATTTTCTTGTGGACCTATTTACTAGCAGCTATAGCCATCACTGGGTGGTCAACATTATACATGTGGCTTCTGAGTTGAATACAGTTGCATTATTTATAGGTACATATTGATGAAAAGTATTTGTTTAATAAAACTCTAGTTTGGTAGTATTTCAAGATCTGAGGAATCACGATAATTCTTTAATGTGTATATGAGATTGTTCCGTATTGATATCTGAATGGTGTTTTGCGTCTGCGAAGCCGCTTGGCACTATTCTGACATCTAAGAATTTAAAGGAGGACTCTTTGTACTTTGAGAAATAGTGTAATATTGTAATATGAATTTTCAGTTATATTTGTCCGGGCTAAGTAGTAAGTTATGTATTTCTTCC

Fln Alignment:

Contig8706___AGY*PCLIFEKESDLVIVSQALNIKAVS*KDRSIMAFLALLEVASMPVLRILLISGLGAFLATSYVDVLTADARKHVNKVIFIVFTPALMFASLSKSVTLDNIISWWYMPVNLLLTFLIGGFYGWIVVKITRTPKHLSGLVIGNCAAGNVGNLLLIIIPAICEQKASPFGDAAVCMDYGMAYSSFSMAIGAIYIWSIVYNIVRSSSCQRDEETQIEARVEEKIPSKDRSNTRLQSNLLQGVHTEVSNSTGKNASLFPSETQDFNKEFGKGNLFQRHLSNFTNGLQLSEILAPPTIGAVVGFIVGAIPQTKGLFVGPNPPLQVIQDSITLLGDGTIPTITLILGGNLTKGLQSSTVKPSXXXXXXXXXXXXXPLTGILIVKGATYLGMAQPDLLYQFILLIQFALPPAMNIGTMTQLFGVGESECSVIFLWTYLLAAIAITGWSTLYMWLLS
B8LRA4______________AGYWPCLIFEKESDFMIVGQALNIKRVSKKDRSIMAFLALLEVASMPVLRILLISGLGAFLATSYVDVLTADVRKHVNKVVFIVFTPALMFASLSKSVTLDNIVSWWYMPVNLLLTFLIGGFCGWIVVKITRTPRHLSGLVIGNCAAGNVGNLLLIIIPAICEQKASPFGDAGVCMDYGMAYASFSMAIGAIYIWSIVYNIVRSSSYQRDEETQIEARIEERIPSKDSSNTGLQSSLLQEVHTEVPSSTGKNGSLFPSETQDFNKDVGKGNIFQRHLSNLTNGLQLSEILAPPTIGAVVGFIVGAIPQTKGLFVGPNPPLQVIQDSIALLGDGTIPTITLILGGNLTKGLQSSTVKPSIIIGIILVRFLILPLIGILIVKSATYLGMAHPDSLYQFILLIQFALPPAMNIGTMTQLFGVGESECSVIFLWTYLLAAIAITGWSTLYMWLLS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
713	14		85		0.993533
714		14		85	0.993533
715	14		85		0.993533
716	85			14	0.993533
717			85	14	0.993533
721	16		83		0.994512
759	14	85			0.993533
760		14		85	0.993533
762			85	14	0.993533
763			85	14	0.993533
778	16	83			0.994512
780	16	83			0.994512
781		83		16	0.994512
782	83			16	0.994512
1037	90	10			0.90298
1039	90			10	0.90298
1302	16			83	0.999991
1303		16	83		0.999991
1616		93		6	0.999364
1664	92		7		0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain