SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8696

Length: 2931 nt

UniGene Fasta

>sp_v3.0_unigene8696
AATGTGTCGGCTTTCAGCAGAGCCAAACAGCACATAAAATGATGCGGGATAGATAGAAGTAAACAGGATTTTCTATATATACATGTAAAGCTTAAGCTCTTAAGCTGCATTTCCCTGCTTAAATAAGTAAATATATAATCCAGTTGAACCATGACTGTTGGAGCAGTCCTTTCTCAGGGGCCTTTCAGCCATTTCTCTCCGCCAGGTTATCAATATAATCAAGCTCTAGCAGTTTATGGGGTTGACCGCCATGAGACCCAGCAAAGGATGTTGCTATCCTGGTCTCCCTCGTGGTGCCTAAGTTCTAGGAGAAAAATAACAGCGAAATGGAACATGGACTTGAGAAACTTCTTTCATGGGAGGTTGGAGTGTACTTCTCCAGCATTCAGAAACAATATTGGCAGAACTCACCATGTAAAATCTTGGAGACAATCTTCAGGGAAGTTTCAGTTTTTCCTTTCCTCTGAGTCAGGCAATAGCAACTGGTCAAAGCCAAGAAAATCAGGAAAGATTGGCGTTTCTTTTATAAAATATAGGCAACACTCTGAAAATCCTGACACAAATGATCCCAGGATTAAGGCACGTGCAGATTTTGAACCTGACATTGGAGCAGATGCACCAGATGCAGTGAGCTCATTCAAAGTATTGCCAGCGTCTGTTACAGTGCAGGGGGTGGTAGACAGAGGATATTTATGGTTGAATGAGTTTCCAAGGCGCTGGTTGATTGTGCTGCTTTGTTTCTCTGCCTTTCTTCTTTGCAACATGGATCGTGTAAACATGAGTATTGCCATCCTTCCCATGTCTAAAGAGTTTAATTGGAGCTCAACAACAGTTGGCTTGGTGCAGTCTTCATTTTTCTGGGGTTACCTGCTTACTCAGGTTGTTGGAGGTATATGGGCAGATAAAGTTGGTGGCAAGCGTGTATTGGGATTTGGAGTAGTTTGGTGGTCACTTGCCACTCTTCTCACACCAATAGCTGCAAGAGTTGGATTGCCTTTCTTGCTTCTTGTCCGTGCATTTATGGGGGTTGGTGAGGGTGTTGCTATGCCCGCTATGAATAACATAATCTCAAAGTGGATCCCCGCCAAAGAAAGAAGCAGATCATTAGCACTAGTTTATAGTGGGATGTACCTTGGTTCTGTAGCTGGGTTGGCCTTCTCTCCTTGGCTGATTCACAAGTTTAGTTGGCCCTCAGTGTTCTATTCTTTTGGTTCCCTTGGAGCGATATGGTTTGCCTCTTGGCAACGGAATGCACAGAGTTCACCTCTTGAAGACCTAGAACTTCGTCCAGAAGAGAAGGAGTTCATTCTACGGAACAGTGAAATAAAAGAACCTGTAAAAACTATTCCATGGAAATTACTGCTGTCAAAGGCACCAGTTTGGGCACTGATAGTTTGCCACTTCTGTCATAATTGGGGGACATTCATTCTTCTCACATGGATGCCAACATACTACAATCAGGTCTTGAAATTTAACCTCACAGAATCTGGAATATTTTGTGTTTTACCTTGGCTTACTATGGCCTTGAGTGCAAATTTGGGAGGATGGATCGCTGACACACTTGTGAACAAGGGAGTATCAATCACAACAGTTCGCAAGGTTATGCAGTCGATTGGCTTTCTTGGACCGGCCTTTTTTTTGACACAGCTGAGCCATGTCAAATCTCCAGCAATGGCAGTTTTGTGCATGACATGCAGCCAAGGTTCTGATGCTTTTTCTCAATCTGGTCTGTACTCTAATCATCAGGATATTGGCCCACGCTATGCAGGTGTGTTGCTTGGGTTGTCAAACACGGCAGGAGTACTAGCTGGCGTTTTTGGAACTGCAGCAACTGGTTACATTCTACAAAACGGTTCTTGGGATGACGTATTCAAGGTTGCGGTTGGCCTGTATCTATTTGGAACTGTAGTATGGAATCTGTTTGCAACTGGAGAGCGAGTCTTTGATTAAATACTATTACATAAAGCATTTTTGATCCTGCTTCATCAGTTAAGAAAGGTTTATTTATGAAGCATTAGGACTTCGAAAGGCAGCTCAGTGGTGTAGATGATGCTCAAACAAAGATCCTATCCAACTGTTTTCACAAAGTAGCGGCAGGCTTAAATCATTATTATATTGAACGTGTAATTCCCTATACTCCTATTTCGTTGCAGATTCCAAACACACGAGAAAGGAGAGCAATGTATATTCCTGCTTGCATACTCCTAGCCTGGGAGTTTAGTGTTCTTAAAAATGTATCCTCTTTTTCTCATTGAAACATTGCAAGAAGAGATGTTGAGGATGTGAAAAAAACATTACATTAACGCAACTGAGTTCGGTTTCTTACTTGTTTACTTGCTGCAACAATGGCAATAATCAGTGCATGCTTATCTGCTCTATCAAAGCCAGTCTGATTTTAAGTGACCTACTCCCGCATTTTCTTGAAGGTACACTAGACGAAATCATCGTTCATGATCTAGAATGTCCATGATCTAGAATGGAGATGGAGGGATCTGTACGTTCTTAATACTCCATGAAATTTGGATATTTTTGTATGATTGGATTAAATGCTTCATTGGCCGAGGATGTTATTTATGGCCAGTAAAAATAGTTTATAGGAAGCTTTAGCAAAGCATAAAATTTTATTATATGCGATTTACACGACATGGCAAATTCGAGTATCCATGAGCATATTTGCAATTGATACACGTACAAGATGTCTTAAAAACAAAGAGGGACGTTAGTTTGTTCAATAGTTGCACGCACCAGACTAGCAAACATTCAAGGTCTGATGGGGATGTATTTTCCAGTCCCACTAGTAGCCGAGGCCAAGGTTTGACTGTTTATTTAATTGATATAGCATGCAATTTCAATAATATTGCTATATCTAACCATCGATGTATACTAATATTCAAAGTTTGTGGAGTGACATGCTTTTTATGATTAGGAAAG

Ace file of the UniGene sp_v3.0_unigene8696

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GEPR] COG0477 Permeases of the major facilitator superfamily	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Sialin, putative	-	-	3.918e-08	-

Source	Gene names
Sma3	ANTR1; ANTR2; ANTR3; ANTR4; ANTR6; A_IG005I10_nn; At2g29650; At2g38060; At3g46980; At4g00370; At5g20380; CHLREDRAFT_122510; CHLREDRAFT_130070; CHLREDRAFT_78631; F5I10.7; F5O24.270; GSVIVT00006398001; GSVIVT00021464001; GSVIVT00024146001; GSVIVT00024164001

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	inorganic diphosphate transmembrane transporter activity	GO:0030504	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00370.1	" ANTR2, PHT4;4 Major facilitator superfamily protein chr4:163153-166111 REVERSE LENGTH=541"	76%
RefSeq	Arabidopsis thaliana	NP_567175.2	putative anion transporter 2 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002298320.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKH1

Fln msg: your sequence is shorter than subject: 600 - 671

Fln protein: MTVGAVLSQGPFSHFSPPGYQYNQALAVYGVDRHETQQRMLLSWSPSWCLSSRRKITAKWNMDLRNFFHGRLECTSPAFRNNIGRTHHVKSWRQSSGKFQFFLSSESGNSNWSKPRKSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPASVTVQGVVDRGYLWLNEFPRRWLIVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWSSTTVGLVQSSFFWGYLLTQVVGGIWADKVGGKRVLGFGVVWWSLATLLTPIAARVGLPFLLLVRAFMGVGEGVAMPAMNNIISKWIPAKERSRSLALVYSGMYLGSVAGLAFSPWLIHKFSWPSVFYSFGSLGAIWFASWQRNAQSSPLEDLELRPEEKEFILRNSEIKEPVKTIPWKLLLSKAPVWALIVCHFCHNWGTFILLTWMPTYYNQVLKFNLTESGIFCVLPWLTMALSANLGGWIADTLVNKGVSITTVRKVMQSIGFLGPAFFLTQLSHVKSPAMAVLCMTCSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQNGSWDDVFKVAVGLYLFGTVVWNLFATGERVFD*

Protein Length: 601

Fln nts: AATGTGTCGGCTTTCAGCAGAGCCAAACAGCACATAAAATGATGCGGGATAGATAGAAGTAAACAGGATTTTCTATATATACATGTAAAGCTTAAGCTCTTAAGCTGCATTTCCCTGCTTAAATAAGTAAATATATAATCCAGTTGAACC_-_ATGACTGTTGGAGCAGTCCTTTCTCAGGGGCCTTTCAGCCATTTCTCTCCGCCAGGTTATCAATATAATCAAGCTCTAGCAGTTTATGGGGTTGACCGCCATGAGACCCAGCAAAGGATGTTGCTATCCTGGTCTCCCTCGTGGTGCCTAAGTTCTAGGAGAAAAATAACAGCGAAATGGAACATGGACTTGAGAAACTTCTTTCATGGGAGGTTGGAGTGTACTTCTCCAGCATTCAGAAACAATATTGGCAGAACTCACCATGTAAAATCTTGGAGACAATCTTCAGGGAAGTTTCAGTTTTTCCTTTCCTCTGAGTCAGGCAATAGCAACTGGTCAAAGCCAAGAAAATCAGGAAAGATTGGCGTTTCTTTTATAAAATATAGGCAACACTCTGAAAATCCTGACACAAATGATCCCAGGATTAAGGCACGTGCAGATTTTGAACCTGACATTGGAGCAGATGCACCAGATGCAGTGAGCTCATTCAAAGTATTGCCAGCGTCTGTTACAGTGCAGGGGGTGGTAGACAGAGGATATTTATGGTTGAATGAGTTTCCAAGGCGCTGGTTGATTGTGCTGCTTTGTTTCTCTGCCTTTCTTCTTTGCAACATGGATCGTGTAAACATGAGTATTGCCATCCTTCCCATGTCTAAAGAGTTTAATTGGAGCTCAACAACAGTTGGCTTGGTGCAGTCTTCATTTTTCTGGGGTTACCTGCTTACTCAGGTTGTTGGAGGTATATGGGCAGATAAAGTTGGTGGCAAGCGTGTATTGGGATTTGGAGTAGTTTGGTGGTCACTTGCCACTCTTCTCACACCAATAGCTGCAAGAGTTGGATTGCCTTTCTTGCTTCTTGTCCGTGCATTTATGGGGGTTGGTGAGGGTGTTGCTATGCCCGCTATGAATAACATAATCTCAAAGTGGATCCCCGCCAAAGAAAGAAGCAGATCATTAGCACTAGTTTATAGTGGGATGTACCTTGGTTCTGTAGCTGGGTTGGCCTTCTCTCCTTGGCTGATTCACAAGTTTAGTTGGCCCTCAGTGTTCTATTCTTTTGGTTCCCTTGGAGCGATATGGTTTGCCTCTTGGCAACGGAATGCACAGAGTTCACCTCTTGAAGACCTAGAACTTCGTCCAGAAGAGAAGGAGTTCATTCTACGGAACAGTGAAATAAAAGAACCTGTAAAAACTATTCCATGGAAATTACTGCTGTCAAAGGCACCAGTTTGGGCACTGATAGTTTGCCACTTCTGTCATAATTGGGGGACATTCATTCTTCTCACATGGATGCCAACATACTACAATCAGGTCTTGAAATTTAACCTCACAGAATCTGGAATATTTTGTGTTTTACCTTGGCTTACTATGGCCTTGAGTGCAAATTTGGGAGGATGGATCGCTGACACACTTGTGAACAAGGGAGTATCAATCACAACAGTTCGCAAGGTTATGCAGTCGATTGGCTTTCTTGGACCGGCCTTTTTTTTGACACAGCTGAGCCATGTCAAATCTCCAGCAATGGCAGTTTTGTGCATGACATGCAGCCAAGGTTCTGATGCTTTTTCTCAATCTGGTCTGTACTCTAATCATCAGGATATTGGCCCACGCTATGCAGGTGTGTTGCTTGGGTTGTCAAACACGGCAGGAGTACTAGCTGGCGTTTTTGGAACTGCAGCAACTGGTTACATTCTACAAAACGGTTCTTGGGATGACGTATTCAAGGTTGCGGTTGGCCTGTATCTATTTGGAACTGTAGTATGGAATCTGTTTGCAACTGGAGAGCGAGTCTTTGATTAA___ATACTATTACATAAAGCATTTTTGATCCTGCTTCATCAGTTAAGAAAGGTTTATTTATGAAGCATTAGGACTTCGAAAGGCAGCTCAGTGGTGTAGATGATGCTCAAACAAAGATCCTATCCAACTGTTTTCACAAAGTAGCGGCAGGCTTAAATCATTATTATATTGAACGTGTAATTCCCTATACTCCTATTTCGTTGCAGATTCCAAACACACGAGAAAGGAGAGCAATGTATATTCCTGCTTGCATACTCCTAGCCTGGGAGTTTAGTGTTCTTAAAAATGTATCCTCTTTTTCTCATTGAAACATTGCAAGAAGAGATGTTGAGGATGTGAAAAAAACATTACATTAACGCAACTGAGTTCGGTTTCTTACTTGTTTACTTGCTGCAACAATGGCAATAATCAGTGCATGCTTATCTGCTCTATCAAAGCCAGTCTGATTTTAAGTGACCTACTCCCGCATTTTCTTGAAGGTACACTAGACGAAATCATCGTTCATGATCTAGAATGTCCATGATCTAGAATGGAGATGGAGGGATCTGTACGTTCTTAATACTCCATGAAATTTGGATATTTTTGTATGATTGGATTAAATGCTTCATTGGCCGAGGATGTTATTTATGGCCAGTAAAAATAGTTTATAGGAAGCTTTAGCAAAGCATAAAATTTTATTATATGCGATTTACACGACATGGCAAATTCGAGTATCCATGAGCATATTTGCAATTGATACACGTACAAGATGTCTTAAAAACAAAGAGGGACGTTAGTTTGTTCAATAGTTGCACGCACCAGACTAGCAAACATTCAAGGTCTGATGGGGATGTATTTTCCAGTCCCACTAGTAGCCGAGGCCAAGGTTTGACTGTTTATTTAATTGATATAGCATGCAATTTCAATAATATTGCTATATCTAACCATCGATGTATACTAATATTCAAAGTTTGTGGAGTGACATGCTTTTTATGATTAGGAAAG

Fln Alignment:

Contig8696___MTVGAVLSQGPFSHFSPPGYQYNQALAVYGVDRHETQQRMXXXXXXXXXXXXRRKITAKWNMDLRNFFHGRLECTS-PAFRNNIGRT-HHVKSWRQSSGKFQFFLSSESGNSNWSKPRKSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPASVTVQGVVDRGYLWLNEFPRRWLIVLLCFSAFLLCNMDRVNMSIAILPMSKEFNWSSTTVGLVQSSFFWGYLLTQVVGGIWADKVGGKRVLGFGVVWWSLATLLTPIAARVGLPFLLLVRAFMGVGEGVAMPAMNNIISKWIPAKERSRSLALVYSGMYLGSVAGLAFSPWLIHKFSWPSVFYSFGSLGAIWFASWQRNAQSSPLEDLELRPEEKEFILRNSEIKEPVKTIPWKLLLSKAPVWALIVCHFCHNWGTFILLTWMPTYYNQ
B8LKH1______________MTVGAVLSQGPLSHFSLPGYQYNQALAVYGVERHETHQRILLSWSPSLCLSPRRKISAKWNTDLRNFSHGRLEYTSAPAFRNGIGRTSYHVKSRRQSAGKFQFFLSSESGNSNWSKPRNSGKIGVSFIKYRQHSENPDTNDPRIKARADFEPDIGADAPDAVSSFKVLPGSVTVQRVVDRGYLWLKEFPKRWLIVLLCFFAFLLCNMDRVNMSIAILPMSREFNWSPATVGLVQSSFFWGYLLTQVAGGIWADKVGGKRVLGFGVVWWSIATILTPIAARVGLPFLLLVRAFMGIGEGVAMPAMNNILSRWIPAKERSRSLALVYSGMYLGSVAGLAFSPFLIQKFSWPSVFYSFGSLGTIWFATWQRNAQSSPLEDLEIRPEEKEFILRNSELKEPVKTIPWKLLLSKAPVWALIVCHFCHNWGTFILLTWMPTYYNQ

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
499	33		66		1.0
627	25		75		1.0
630			75	25	1.0
639	10			90	0.90298
641		90	10		0.90298
642	90			10	0.90298
694	25			75	0.996473
695		25		75	0.996473
698			75	25	0.996473
956	20	80			0.995493
1037	16		83		0.994512
1039			83	16	0.994512
1041			83	16	0.994512
1228	10		90		0.90298
1229	90			10	0.90298
1308	12			87	0.992554
1331	83	16			0.994512
1333	83			16	0.994512
1334			83	16	0.994512
1533	33		66		0.997452
1537	66			33	0.997452
1711		12		87	0.992554
1831	50		50		1.0
1875	25			75	0.996473
1878	75			25	0.996473
1879			75	25	0.996473
1885	33		66		0.997452
1963	75	25			0.996473
2177			75	25	0.996473
2178			75	25	0.996473
2217			33	66	0.997452
2305			16	83	0.994512
2306	50			50	1.0
2307	83	16			0.994512
2417		50		50	1.0
2470		50		50	1.0
2514		90		10	0.90298
2516		90	10		0.90298
2517		90	10		0.90298
2518	88	11			0.923564
2521	88			11	0.923564
2522	88	11			0.923564
2525		11		88	0.923564
2527		12	87		0.992554
2528	12		87		0.992554
2536			12	87	0.992554
2538			12	62	1.0
2746		60	40		1.0
2771	20		80		0.995493
2881		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain