SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8684

Length: 2889 nt

UniGene Fasta

>sp_v3.0_unigene8684
ATGGGGGTGGGGACAACGTGGGTAAAGTTCAGATCTGCACACGCTGGGTGTCTCGTCCATCCTCCGCCTCAGATCCCAACAGTCTCGCCGCGGGCTTCACAGAGACAAACACGGCCGATTCTACCGGACGGGCGAAATCACCATGATCGATAGATACAGTTCGAGGTGAATGGAAGCTTCGCCGTTGATCCAAGCCACCTCAGTGGAGGGACGTGTATTGTCTTGACTTTTGGCTGTACAAAAGAAAGAAGTAGCGAGGAAAATCCGAAAAATATAAAATTCAGGTTCAAATTCTCAGGAAATAGCTTAAATTTCGCTTTCGATCGCTATCAGAGCCTTGAAAGTTCAGAAAAGATTGAAAACGCGGTCATTTTGGCAAATTGAAGAAACGGAAATACTTCGGAAGTATTCGGTAATCCCGCACGTTTGAGCTTCTTAGGTCAAGCCTTAAAGTTTTATGGCTATGCATGGGGATAACTTGCTTTCAGGTGATTGAAATTTGAAAATTTACTAAACTTTGATGGCTTTGTTTTGAGGCTCGGTGAATTGATCTTTACGGTGCTTTATGTGAGAAATTCTGTGGAAAAATATGGTCTTCAGAGATCTTTAATGGTTTTTCTTGAAGAAATGATCATGCTCCAAAAGGATTCCGCAGTTCTGCACATTTAACTTTCTTAGCTGAAGCCTAACAGCTTTCCGGGTATGCATCGGGAATAACTTGGTTGAATTTGCTGAAAATTTTCAAAATTTACTGAAATTCGAAGGATTTGTTTTGAGGCTCAGTGAGTTGATCTTAACGGTGTTCTTTGTGAGAAATTCTGTGGGACAAATTGGACTTGAGAGACATTTAATGGTTTTTGCTACAGAATTGTGGAATTATCTCGTGTGACCTTAAAGGCTCTTGCGGTCTTCGTTCTTGCACGAATTTTGGCTAAAACTGCTGAAAGAAGTCCAGTTTCAACGCATTTAAGAAAACTACTCAAACATCGGTGAATTCAGTGGTGGAGTCTTCCAATCGAGGAGGCTGCAACAAGAAACTGTTCTTGCAGGGACTATTTATATCGGCAAATTAACCGAAGTTTTGAGGATATGGAATTGGCTCGGAAATAGTTCATTAGCGGGACAATTTGATAGGAATAATCAAGCTAAGCTTTTGCTTGGAACGCTTATAAAATTTTATGTTAAAGATCGGTCAATTTTGAACTCCGGCAGATAAAAGTCTCGTTTGTGGTGTGGAGCGGAGGCGGCTGCTGTTGCAGTTTAATCTAACGACCCGGTAATGGCCCAGACAGCCCAACCAGCTTTAGATCCCAATGCTTATGGGAACGGCAGTATTCCCGGCGTTCTGACTCATGGAGGCCGGTTTGTGCAGTATAATCTTTATGGCAACATGTTTGAAGTTACCGCAAAATATGTCCCTCCGCTATTTCCTATTGGACGAGGAGCATACGGTGTGATCTGCTCAGCACTGAATTCAGAAACCAATCAGCAAGTTGCATTAAAAAAAATATCCAATGCCTTTGACAATTTAATAGATGCAAGGCGGACCCTACGAGAAATAAAACTGCTTCGACACATGCAGCATGAAAATGTTATTTCCATCAAGGACATATTGCTTCCCCCTCAACGGGAAGCTTTTGATGATGTGTACATTGCATTGGAGTTAATGGATACTGATCTCCATCAAGTTATCCGTTCAAATCAGGCTTTAAGCGAGCAACATTGCCAGTACTTTTTGTATCAGATATTGCGAGGATTAAAATATATACATTCTGCAAATGTCCTGCATAGGGACTTGAAGCCCAGCAATCTTCTTCTGAATGCAAATTGTGATCTCAAAATAGCTGATTTTGGACTAGCACGTACTACATCTGAAACTGACTTCATGACAGAGTACGTGGTTACACGATGGTATAGAGCCCCAGAATTGTTATTGAATTCACCAGATTATACTGCAGCTATTGATGTGTGGTCAGTAGGTTGCATTTTCATGGAATTGATGAATAGGAAACCCTTATTTCCTGGCAAAGATCATGTGCATCAGCTCCGTTTAATAACACAGTTAACTGGTACCCCAACTGATGCTGATCTAGGTTTTATTCGGAGCGAAAATGCAAAACGACTTGTTCAGCTGTTGCCTCAACTTCCAAGACAATCATTAGCTGAAAAGTTTCCACATGTACATCCTTCAGCTATAGACATTTGTGAAAGAATGTTGACATTTGATCCAAACCAGAGAATTACAGTGGAGGAAGCATTAAATCATCCTTACCTGGGTAGTCTGCATGATGAAACTGATGAGCCTACCTGTCCAGTTCCATTCAACTTTGACTTTGAGCAGCATGCATTGACAGAAGAACAGATGAGAGAGCTGATATACATGGAGGCTCTTGCATTCAATCCAGCTTAGAAGACTGAGTGGTGGTCTTTTTTCTTGTTTCAGATTTCACAACTGGTCGTTTTGTTTGATATTAAGATAAATGTTTGATTTAAATTTTGAGCTGTTATTTTCCAGTTGAGAAGCATGTTACCTTGCACAAGGGAAAATCAATATATAAAACATAAATTTGATATTTGAACAGCAATATGCCAGAACCTACTAAACTGGATGCTAAATGTGCCAGACGTTCCAAATAATAGACAGTTAACTAACACCATTATTTAGTACATGCTTCTGCTCGAACTTGCCCCTTTTCTAGCTTCTTGAAAGACTTGTCATGTTTGTAGTTTTTGGATAAACGTTTTCTTTCATTATGAAAGATGTTATTCCCTTTAAGTTTCTGTACGCATAGTAACCGTACACCTTATATTGAGAGATGTGAACTCTATTTTCTTTGGCTTTGGTGAACGTGGCTACTTAATCTTCATTACTAAATACTAATGCACTAC

Ace file of the UniGene sp_v3.0_unigene8684

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitogen activated protein kinase 6 n=2 Tax=Pinaceae RepID=C7ENI3_PINTA	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Mitogen-activated protein kinase	-	-	2.145e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	-

Source	Gene names
Sma3	AP22.98; AT1G10210; Asmap1; At1g01560; At1g07880; At1g10210; At1g59580; At2g18170; At2g42880; At2g43790; At2g46070; At3g45640; At3g59790; At4g11330; At4g36450; At5g19010; BIMK1; C7A10.910; CHLREDRAFT_183031; CHLREDRAFT_193901; CHLREDRAFT_78072; CrMPK1; Cr

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	activation of MAPK activity involved in osmosensory signaling pathway	GO:0000169	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	intracellular protein kinase cascade	GO:0007243	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	camalexin biosynthetic process	GO:0010120	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	response to indolebutyric acid stimulus	GO:0080026	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Dihydroneopterin aldolase/epimerase domain	IPR006157	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3	MAP kinase, p38	IPR008352	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43790.1	ATMPK6, MPK6, MAPK6, ATMAPK6 MAP kinase 6 chr2:18138477-18140693 FORWARD LENGTH=395	76%
RefSeq	Arabidopsis thaliana	NP_181907.1	mitogen-activated protein kinase 6 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002310398.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPV5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: SNDPVMAQTAQPALDPNAYGNGSIPGVLTHGGRFVQYNLYGNMFEVTAKYVPPLFPIGRGAYGVICSALNSETNQQVALKKISNAFDNLIDARRTLREIKLLRHMQHENVISIKDILLPPQREAFDDVYIALELMDTDLHQVIRSNQALSEQHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNSPDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQLRLITQLTGTPTDADLGFIRSENAKRLVQLLPQLPRQSLAEKFPHVHPSAIDICERMLTFDPNQRITVEEALNHPYLGSLHDETDEPTCPVPFNFDFEQHALTEEQMRELIYMEALAFNPA*

Protein Length: 383

Fln nts: ATGGGGGTGGGGACAACGTGGGTAAAGTTCAGATCTGCACACGCTGGGTGTCTCGTCCATCCTCCGCCTCAGATCCCAACAGTCTCGCCGCGGGCTTCACAGAGACAAACACGGCCGATTCTACCGGACGGGCGAAATCACCATGATCGATAGATACAGTTCGAGGTGAATGGAAGCTTCGCCGTTGATCCAAGCCACCTCAGTGGAGGGACGTGTATTGTCTTGACTTTTGGCTGTACAAAAGAAAGAAGTAGCGAGGAAAATCCGAAAAATATAAAATTCAGGTTCAAATTCTCAGGAAATAGCTTAAATTTCGCTTTCGATCGCTATCAGAGCCTTGAAAGTTCAGAAAAGATTGAAAACGCGGTCATTTTGGCAAATTGAAGAAACGGAAATACTTCGGAAGTATTCGGTAATCCCGCACGTTTGAGCTTCTTAGGTCAAGCCTTAAAGTTTTATGGCTATGCATGGGGATAACTTGCTTTCAGGTGATTGAAATTTGAAAATTTACTAAACTTTGATGGCTTTGTTTTGAGGCTCGGTGAATTGATCTTTACGGTGCTTTATGTGAGAAATTCTGTGGAAAAATATGGTCTTCAGAGATCTTTAATGGTTTTTCTTGAAGAAATGATCATGCTCCAAAAGGATTCCGCAGTTCTGCACATTTAACTTTCTTAGCTGAAGCCTAACAGCTTTCCGGGTATGCATCGGGAATAACTTGGTTGAATTTGCTGAAAATTTTCAAAATTTACTGAAATTCGAAGGATTTGTTTTGAGGCTCAGTGAGTTGATCTTAACGGTGTTCTTTGTGAGAAATTCTGTGGGACAAATTGGACTTGAGAGACATTTAATGGTTTTTGCTACAGAATTGTGGAATTATCTCGTGTGACCTTAAAGGCTCTTGCGGTCTTCGTTCTTGCACGAATTTTGGCTAAAACTGCTGAAAGAAGTCCAGTTTCAACGCATTTAAGAAAACTACTCAAACATCGGTGAATTCAGTGGTGGAGTCTTCCAATCGAGGAGGCTGCAACAAGAAACTGTTCTTGCAGGGACTATTTATATCGGCAAATTAACCGAAGTTTTGAGGATATGGAATTGGCTCGGAAATAGTTCATTAGCGGGACAATTTGATAGGAATAATCAAGCTAAGCTTTTGCTTGGAACGCTTATAAAATTTTATGTTAAAGATCGGTCAATTTTGAACTCCGGCAGATAAAAGTCTCGTTTGTGGTGTGGAGCGGAGGCGGCTGCTGTTGCAGTTTAATCTAACGACCCGGTAATGGCCCAGACAGCCCAACCAGCTTTAGATCCCAATGCTTATGGGAACGGCAGTATTCCCGGCGTTCTGACTCATGGAGGCCGGTTTGTGCAGTATAATCTTTATGGCAACATGTTTGAAGTTACCGCAAAATATGTCCCTCCGCTATTTCCTATTGGACGAGGAGCATACGGTGTGATCTGCTCAGCACTGAATTCAGAAACCAATCAGCAAGTTGCATTAAAAAAAATATCCAATGCCTTTGACAATTTAATAGATGCAAGGCGGACCCTACGAGAAATAAAACTGCTTCGACACATGCAGCATGAAAATGTTATTTCCATCAAGGACATATTGCTTCCCCCTCAACGGGAAGCTTTTGATGATGTGTACATTGCATTGGAGTTAATGGATACTGATCTCCATCAAGTTATCCGTTCAAATCAGGCTTTAAGCGAGCAACATTGCCAGTACTTTTTGTATCAGATATTGCGAGGATTAAAATATATACATTCTGCAAATGTCCTGCATAGGGACTTGAAGCCCAGCAATCTTCTTCTGAATGCAAATTGTGATCTCAAAATAGCTGATTTTGGACTAGCACGTACTACATCTGAAACTGACTTCATGACAGAGTACGTGGTTACACGATGGTATAGAGCCCCAGAATTGTTATTGAATTCACCAGATTATACTGCAGCTATTGATGTGTGGTCAGTAGGTTGCATTTTCATGGAATTGATGAATAGGAAACCCTTATTTCCTGGCAAAGATCATGTGCATCAGCTCCGTTTAATAACACAGTTAACTGGTACCCCAACTGATGCTGATCTAGGTTTTATTCGGAGCGAAAATGCAAAACGACTTGTTCAGCTGTTGCCTCAACTTCCAAGACAATCATTAGCTGAAAAGTTTCCACATGTACATCCTTCAGCTATAGACATTTGTGAAAGAATGTTGACATTTGATCCAAACCAGAGAATTACAGTGGAGGAAGCATTAAATCATCCTTACCTGGGTAGTCTGCATGATGAAACTGATGAGCCTACCTGTCCAGTTCCATTCAACTTTGACTTTGAGCAGCATGCATTGACAGAAGAACAGATGAGAGAGCTGATATACATGGAGGCTCTTGCATTCAATCCAGCTTAG___AAGACTGAGTGGTGGTCTTTTTTCTTGTTTCAGATTTCACAACTGGTCGTTTTGTTTGATATTAAGATAAATGTTTGATTTAAATTTTGAGCTGTTATTTTCCAGTTGAGAAGCATGTTACCTTGCACAAGGGAAAATCAATATATAAAACATAAATTTGATATTTGAACAGCAATATGCCAGAACCTACTAAACTGGATGCTAAATGTGCCAGACGTTCCAAATAATAGACAGTTAACTAACACCATTATTTAGTACATGCTTCTGCTCGAACTTGCCCCTTTTCTAGCTTCTTGAAAGACTTGTCATGTTTGTAGTTTTTGGATAAACGTTTTCTTTCATTATGAAAGATGTTATTCCCTTTAAGTTTCTGTACGCATAGTAACCGTACACCTTATATTGAGAGATGTGAACTCTATTTTCTTTGGCTTTGGTGAACGTGGCTACTTAATCTTCATTACTAAATACTAATGCACTAC

Fln Alignment:

Contig8684___EAAAVAV*SNDPVMAQTAQPALDPNAYGNGSIPGVLTHGGRFVQYNLYGNMFEVTAKYVPPLFPIGRGAYGVICSALNSETNQQVALKKISNAFDNLIDARRTLREIKLLRHMQHENVISIKDILLPPQREAFDDVYIALELMDTDLHQVIRSNQALSEQHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNSPDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQLRLITQLTGTPTDADLGFIRSENAKXXXXXXXXXXXXXXAEKFPHVHPSAIDICERMLTFDPNQRITVEEALNHPYLGSLHDETDEPTCPVPFNFDFEQHALTEEQMRELIYMEALAFNP
C0PPV5______________EAAAAPVQSSDTLMSDAPQAA-GSNPMDN--IPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSSLNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPRREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHTLAIDLCERMLTFDPNQRITVEEALAHPYLANLHDISDEPTCSMPFSFDFEQHTLTEDQMKELIYREALVFNP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
989	12			87	0.992554
991	12		87		0.992554
992			87	12	0.992554
994	14		85		0.993533
995	85	14			0.993533
1025	16		83		0.994512
1026		16	83		0.994512
1027	16	83			0.994512
1029			83	16	0.994512
1158	14		85		0.993533
1254			16	83	0.994512
1785		85		14	0.993533
2068		20		80	0.995493
2121	88	11			0.923564
2122	88			11	0.923564
2123	88	11			0.923564
2124	11	88			0.923564
2126	88		11		0.923564
2204		88		11	0.923564
2243	90		10		0.90298
2262		11		88	0.923564
2474		33		66	0.997452
2556		33		66	0.997452
2559	66			33	0.997452
2670		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain