SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8682

Length: 1722 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8682

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] emb\|CAA23048.1\| putative polygalacturonase [Arabidopsis thaliana] emb\|CAB81300.1\| putative polygalacturonase [Arabidopsis thaliana] gb\|AAL32775.1\|	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Polygalacturonase, putative	-	-	9.448e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	3.171e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		3.171e-13	%
Sma3	Starch and sucrose metabolism	00500		3.171e-13	%
Sma3	Metabolic pathways	01100		3.171e-13	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	2.928e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.928e-09	%
Sma3	Starch and sucrose metabolism	00500	2.928e-09	%
Sma3	Metabolic pathways	01100	2.928e-09	%

Source	Gene names
Sma3	6J23.27; 8F2.19; AT3g62110/T17J13_70; AT4g23500; AT4g23820; AT4g33440; At1g19170; At2g23900; At3g06770; At3g16850; At3g42950; At3g48950; At3g61490; At3g62110; At4g23500; At4g23820; At4g23820/F9D16.290; At4g33440; At5g41870; At5g49215; B1040D09.13-1; B1040

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23820.1	Pectin lyase-like superfamily protein chr4:12397217-12400050 REVERSE LENGTH=444	62%
RefSeq	Arabidopsis thaliana	NP_194113.1	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002304552.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: your sequence is shorter than subject: 439 - 472

Fln protein: RGIRVGIEPKTCIGIVPNKHRENVFSIRYFGAVGDGKTLNTKAFRTAISHIQNLNSRGKGGTLLYIPSGVWLTETFNLTSHLTLYLAKDAVLKASQDTNGWLVIDPLPSYGRGRELPGGRYISFIHGDGLEDVVITGQNGTIDGQGEVWWNMWRDGTLKYTRGGLVELMNSKDVIISNLVLLNSPFWNVHPIYCSNVVVRGLTIIAPRDSPNTDGIDPDSSSNVCIEDCYVSNGDDGIAIKSGWDEYGISFNRPSSNIIVRRITISTPFSGIAIGSETSGGIRDILVENISIYSSTVGIRVKTNVGRGGIIRNITFSHIYLDNVGTGIKFSGNTGDHPDARYNPMALPVVGDIAVLNVVGNSIKTAGSLVGLQRSPFSNICLANIHIQEKVGRSTGSSWDCKDVEGSSIGVTPSPCQQLQSPGSSFCNNAFQLHNFDP*

Protein Length: 440

Fln nts: CGTGGCATTAGGGTTGGAATAGAACCGAAAACGTGTATCGGAATAGTTCCGAACAAACATCGGGAAAACGTTTTCTCCATCAGATATTTTGGAGCTGTAGGCGACGGGAAAACTCTCAACACCAAAGCTTTTCGGACGGCAATCTCTCACATTCAAAATCTAAACAGCAGAGGCAAAGGCGGCACATTGCTTTATATTCCGAGCGGAGTTTGGCTTACAGAAACTTTCAATCTTACCAGTCATTTGACTCTGTATTTGGCTAAGGATGCCGTTTTAAAGGCATCACAGGACACGAATGGATGGCTCGTAATCGATCCTCTTCCCTCTTACGGTAGAGGCAGAGAACTCCCAGGTGGAAGGTATATTAGCTTTATACATGGAGACGGACTGGAAGATGTCGTCATTACAGGGCAAAATGGCACTATTGATGGCCAGGGTGAAGTTTGGTGGAATATGTGGAGAGATGGCACCTTGAAATACACGAGAGGCGGTCTAGTTGAGCTGATGAACTCAAAAGACGTTATAATATCGAATCTTGTTCTGCTGAATTCGCCTTTCTGGAATGTACATCCCATCTACTGCAGCAACGTTGTGGTCCGGGGATTGACGATTATAGCTCCGCGGGATTCGCCTAACACTGACGGAATCGATCCAGATTCCAGCTCGAATGTCTGCATCGAAGACTGCTATGTGAGCAACGGTGACGACGGGATAGCCATCAAGAGTGGGTGGGATGAGTACGGAATATCTTTCAACCGTCCGAGCTCCAACATTATTGTCCGGAGGATAACCATTTCAACGCCTTTCTCAGGAATAGCCATCGGCAGCGAGACGTCCGGCGGAATCCGCGACATTCTGGTAGAAAATATCAGCATCTACAGCTCGACAGTCGGAATCCGAGTCAAGACCAACGTAGGAAGAGGCGGGATCATTCGCAATATCACATTTTCCCACATATACCTGGACAATGTGGGCACTGGAATCAAATTTTCAGGCAATACGGGCGATCATCCCGATGCTCGATATAACCCTATGGCTCTTCCGGTCGTCGGAGATATCGCGGTGCTGAATGTGGTGGGCAATAGCATCAAAACCGCGGGTTCCCTGGTGGGATTGCAGCGTTCTCCATTTTCGAACATTTGTTTAGCAAACATTCATATTCAAGAAAAGGTTGGACGGTCAACTGGTTCTTCATGGGATTGCAAGGATGTGGAAGGAAGTTCCATTGGCGTAACTCCTAGCCCCTGTCAGCAACTTCAGAGCCCAGGATCTTCGTTCTGCAACAACGCTTTCCAACTTCATAATTTTGATCCATAA___ATTTTATTTTCCCCTCGGCTACTGGTCGAGTCCTGGGAATCATTTCTGAAATGAGCTGCAATTTTGAAATGCATTTCGTTATTTACATAATAATTATCTGTTGGTGTGAATGTGATGATGCAAGGGAATAAAACTTTTTGGAAAGTCAAAAAAGCTGTATTTGCTTACGCTAAATGTCAAATAAGTGATTAGATTAGTTAGCTGTGTCCCTACCACATGCTTTCCTTGTCTGGTAAAATAGACAGCCAAGCATGGCAAAAGTGGAAGGATGCTTATTGTTATATAGGCTAACACTAACAGTCAAGCCATGGTGGCCCATGGCTCTTAATTGCTATGAATGCGGGATAGCGCGTAAGTTTGTTTTTATTATCTTAAATGTCAATTCGTAAGGTCATTCACAACTTT

Fln Alignment:

Contig8682___IVPNKHRENVFSIRYFGAVGDGKTLNTKAFRTAISHIQNLNSRGKGGTLLYIPSGVWLTETFNLTSHLTLYLAKDAVLKASQDTNGWLVIDPLPSYGRGRELPGGRYISFIHGDGLEDVVITGQNGTIDGQGEVWWNMWRDGTLKYTRGGLVELMNSKDVIISNLVLLNSPFWNVHPIYCSNVVVRGLTIIAPRDSPNTDGIDPDSSSNVCIEDCYVSNGDDGIAIKSGWDEYGISFNRPSSNIIVRRITISTPFSG-IAIGSETSGGIRDILVENISIYSSTVGIRVKTNVGRGGIIRNITFSHIYLDNVGTGIKFSGNTGDHPDARYNPMALPVVGDIAVLNVVGNSIKTAGSLVGLQRSPFSNICLANIHIQEKVGRSTGSSWDCKDVEGSSIGVTPSPCQQLQ---SPGSSFCNNAFQL
B8LQW0______________VAPSCRAQSV-SIAEFGGVGDGTTVNTEAFRKAIEHLSEFSETGGGQ--LYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTI-TMAAKSKKYPWNCTYIHGLSNAVYPQPCSLLEERPAEGDAFCPSPQEL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
9			33	66	0.997452
10	66		33		0.997452
573		90		10	0.90298
1126		6		93	1.0
1573	4		95		0.996252

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain