SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8664

Length: 1488 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8664

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana] gb\|AAL24260.1\| AT5g58730/mzn1_180 [Arabidopsis thaliana] gb\|AAM61052.1\| unknown [Arabidopsis thaliana] gb\|AAM65354.1\| AT5g58730/mzn1_180 [Arabidopsis thaliana] gb\|AED97092.1\| pfkB-like ca	-	-	0.0	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	58%
Sma3	Myo-inositol kinase	-	-	4.689e-14	-

Source	Gene names
Sma3	At5g58730; GSVIVT00024103001; LOC_Os03g52760; MIK; OSJNBa0057G07.25; OSJNBb0016H12.26; OsI_13436; OsJ_12495; PHYPADRAFT_123487; PHYPADRAFT_16712; PHYPADRAFT_173991; POPTRDRAFT_1088118; POPTRDRAFT_172298; RCOM_0612460; VITISV_018620; adh1B; lpa3;

Source	GOs	Term	Type	e value	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58730.1	pfkB-like carbohydrate kinase family protein chr5:23723627-23725324 REVERSE LENGTH=353	47%
RefSeq	Arabidopsis thaliana	NP_200681.1	pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002314103.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9RCB3

Fln msg: your sequence is longer than subject: 389 - 303

Fln protein: MARGGARSHQSGQQQDDDENEEAAATGGRGVRALVVGNYCHDLIRLHAGREVESLGGSVSYVTNILDALGLHSTVISKVGSDFSYASATASHPPSVVHAAKTTRFYADFTAGSDRVLRVVDSCDPIHPSDIPSDSTEHAIGLAVGVAQEILPETLRRMGEVSKLVMVDIQALIRTIDPVDGTVRLRNLCETDFYDFLEEISFLKASTQEAAYLNVEEVRLRTCVIITQGKDGCRVYERHRDFHVPTFPAQEVDPTGAGDSFLAGFSAGLMRGLSVEDAVLVGNYFGAVTVGQIGVPRFNDEHLQRLHELLDQRRKTDICRSSELNCTSGPTHIGSADISKSWVEELNDPNLREELDNRVKNGICIPTQHGSAELSKSPKRGELGDFLA*

Protein Length: 390

Fln nts: ATTTCTGCT_-_ATGGCACGAGGAGGTGCCCGATCACACCAAAGCGGACAACAACAGGACGATGATGAAAACGAAGAAGCAGCAGCAACAGGAGGAAGAGGGGTTCGAGCTCTTGTCGTAGGTAACTACTGCCACGACCTCATCAGGCTGCACGCAGGGCGCGAGGTCGAGTCCCTGGGTGGCTCTGTCTCCTATGTCACAAACATCCTCGATGCCCTCGGCCTTCACTCCACCGTTATCTCCAAGGTCGGCTCTGATTTCTCTTATGCCTCCGCGACGGCATCCCACCCGCCCAGTGTCGTCCACGCCGCCAAAACCACGCGGTTTTACGCCGACTTTACCGCCGGTAGCGACCGTGTGCTTCGCGTCGTCGACAGCTGCGATCCAATTCACCCCTCCGACATACCCTCCGATTCGACGGAACATGCCATTGGCCTAGCGGTAGGAGTAGCGCAGGAGATACTGCCGGAGACCCTGCGGCGGATGGGCGAGGTTTCGAAACTCGTCATGGTCGACATACAGGCCTTGATACGCACCATCGATCCTGTGGACGGGACCGTCAGGTTGCGGAATCTCTGTGAAACTGATTTTTATGATTTCCTTGAAGAAATTTCGTTTCTGAAGGCGTCCACCCAGGAGGCCGCGTATCTCAATGTCGAAGAAGTCCGACTGAGGACGTGCGTGATCATTACGCAGGGGAAGGACGGGTGCAGAGTCTACGAGCGGCACCGGGATTTCCATGTCCCCACCTTTCCGGCGCAGGAAGTCGACCCCACGGGCGCCGGAGACAGCTTTCTGGCGGGATTCTCTGCCGGGCTGATGCGTGGATTGTCGGTGGAGGATGCCGTGCTCGTCGGAAATTATTTTGGGGCTGTTACCGTTGGGCAGATTGGCGTTCCTCGCTTCAACGACGAGCATTTGCAGAGATTGCATGAGCTCTTAGACCAGAGAAGGAAAACCGACATTTGTAGATCTTCGGAATTGAACTGTACCTCTGGCCCTACCCATATTGGTTCTGCAGATATTTCTAAGAGTTGGGTGGAAGAACTTAACGATCCAAATTTGCGGGAAGAGCTAGATAATAGAGTGAAAAATGGCATCTGTATCCCCACACAACATGGTTCTGCTGAGCTTTCCAAGTCACCTAAAAGGGGAGAGCTTGGCGATTTTCTTGCTTAA___AGCGGTTTAGCCAGCGACTGTCACTGGCAAAGTGTGTTTTGACTCCTCGTTGTTTTGAACATGAGATCAAATTCGAATTTTCGCACAAATTCCTAGATGTACGAAATTGTGTCTAATGCTAATTCAAAGAAAAAATATTTGAGCTGAATAGCCAAGCAAATGTCTAACTGGTCCGTTCTTCGTACATATGTAACTAATTGTCTTTTAGTTCCATGATCATTGCGTTGGCATTAAACCACTCTAGATTACTAAATTTTGTGTGTTTTAGTTACATGATCTTTTGTCTTTCAGTTACACGATTATGGTTACATG

Fln Alignment:

Contig8664___ALVVGNYCHDLIRLHAGREVESLGGSVSYVTNILDALGLHSTVISKVGSDFSYASATASHPPSVVHAAKTTRFYADFTAGSDRVLRVVDSCDPIHPSDIPSDSTEHAIGLAVGVAQEILPETLRRMGEVSKLVMVDIQALIRTIDPVDGTVRLRNLCETDFYDFLEEISFLKASTQEAAYLNVEEVRLRTCVIITQGKDGCRVYERHRDFHVPTFPAQEVDPTGAGDSFLAGFSAGLMRGLSVEDAVLVGNYFGAVTVGQIGVPRFNDEHLQRL
A9RCB3______________ALVVGHYCHDQITLHGGETVYSLGGSVSYITNVFEALGIGSRVASKVGPDFLYCSQI-THPPEVIEDQKTTEFFADFTQGEERILKAGSICAPIDSMDIPE--MDYELGLAVGIACEILPETLQHMVDVARYVVVDVQALIRTIDPETGLVGLRNLDETPFIDMLEDIHFLKAARNEALYIDIEKVRQKTCLIVTEGKNGSRIYSNDREFRIPAFPAIEVDPTGAGDSFLAGFSAGLYQGLPIEQAVLMGNYFGGLAVAQVGIPHFTASQLEVL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1006		76	7		0.999983
1015			76	23	1.0
1033	75	25			1.0
1079	90		10		0.90298
1112		80		20	0.999996
1113	80		20		0.999996
1129		90		10	0.90298
1219		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain