SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8642

Length: 1249 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8642

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	AT4g10000; At4g10000; At5g03880; CHLREDRAFT_112349; F8F6_90; GSVIVT00021605001; GSVIVT00021860001; MED24.18; MICPUCDRAFT_21326; MICPUCDRAFT_34207; MICPUN_99974; OJ1150_A11.35; Os08g0558200; OsI_16033; OsI_30255; OsJ_20709; OsJ_28266; Ot14g01000; P0562A06.

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3		IPR012335	-	-
Sma3		IPR013753	-	-
Sma3	Flagellar basal body rod protein, conserved site	IPR019776	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G10000.1	Thioredoxin family protein chr4:6260707-6263053 REVERSE LENGTH=333	58%
RefSeq	Arabidopsis thaliana	NP_567349.1	thioredoxin family protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002327378.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1Z7

Fln msg: W1: There is no M at the beginning,

Fln protein: LQSTHKTISSDVWGPISFGFVIKHSRSAANPQSHTHSGTSRNWFESRSLATATRGISTSGVEHHKRLLFVRAKEEGSQGGPGREELQLPQNETDDTNAEVNMANQGKGSNSVLSFLCPLLKFVGGGDPSLARNDIFEITTSGLASIARLPWGSQTLPTAAAVREEKGKPQACPFCRRVREALTELDLSAEVYPCPKGSLKHREIVRRYGGKEQFPYLIDPNTGVSLYESGDIVKYLFQQYGNGNDPSPGLLESTLFTGWVPTILRAGRGMTLWEKAKPELAAERLELFSYENSLYARIVREALCELELPYILHNAEKGSSQIKTLLQLAGSDKVPYLIDPNTGVCLDNHKEIISYLFQTYCSA*

Protein Length: 365

Fln nts: ATGGGAATGATGATCATTTCTCAACGAAGCCTGTTGTACGTAATTGCAGAGCACACACAAAACTATCAGCAGCGATGTCTGGGGGCCCATTTCCTTTGGTTTCGTGATTAAACACTCACGTAGTGCCGCTAACCCGCAGAGTCACACGCACTCTGGAACTTCAAGAAATTGGTTCGAATCCCGTTCGCTTGCAACTGCGACTCGTGGGATTTCGACAAGCGGAGTTGAGCATCATAAGAGGCTGTTGTTTGTCAGGGCGAAAGAAGAAGGATCACAGGGCGGACCAGGCAGAGAGGAGCTACAACTCCCTCAAAATGAAACAGACGACACTAATGCAGAAGTAAACATGGCCAACCAAGGCAAAGGCAGCAACAGTGTCTTGTCTTTCCTCTGTCCATTGCTCAAGTTTGTGGGGGGTGGAGATCCATCCTTAGCTCGCAATGATATTTTTGAGATTACAACCTCTGGTCTTGCAAGTATTGCAAGACTACCATGGGGTTCACAAACTTTACCCACTGCTGCAGCCGTGCGAGAGGAAAAAGGGAAGCCACAGGCATGCCCTTTTTGCAGGCGAGTGAGAGAAGCTCTGACTGAATTGGATCTTTCTGCAGAAGTCTACCCTTGTCCCAAAGGCTCTTTAAAGCACCGAGAGATTGTTAGAAGATATGGTGGCAAGGAACAGTTCCCTTATCTCATTGATCCAAACACTGGTGTTTCTTTATATGAAAGCGGTGATATAGTGAAATATTTATTCCAACAATATGGGAATGGTAATGACCCTTCTCCAGGTCTCTTGGAAAGCACTTTGTTCACTGGATGGGTTCCCACCATTTTGCGAGCTGGAAGAGGAATGACACTATGGGAAAAAGCCAAACCAGAACTAGCTGCTGAAAGATTGGAACTCTTTTCTTATGAAAACAGCCTGTATGCGAGGATAGTTAGAGAAGCCCTTTGTGAATTGGAGCTCCCTTACATTCTTCACAATGCTGAAAAAGGGTCTTCACAAATTAAGACTTTATTACAGCTTGCAGGTTCAGATAAGGTACCATACCTTATAGACCCAAACACGGGGGTCTGCTTAGACAATCACAAGGAAATTATTTCATATTTATTTCAGACGTATTGCAGTGCATGA___TAGCAGCTGCATATCCGTATTGTTGTCTGGCATATGTGGTGCATGTAAGGGCTGGAAAAGAGCCTTGTAGGCTTTGGACTAGAATTTGAATACGTTCAGATGTATGTGAAGTTG

Fln Alignment:

Contig8642___PISFGFVIKHSRSAANPQSHTHSGTSRNWFESRSLATATRGISTSGVEHHKRLLFVRAKEEGSQGGPGREELQL---PQNETDDTNAEVNMANQGKGSNSVLSFLCPLLKFVGGGDPSLARNDIFEITTSGLASIARLPWGSQTLPTAAAVREEKGKP---------QACPFCRRVREALTELDLSAEVYPCPKGSLKHREIVRRYGGKEQFPYLIDPNTGVSLYESGDIVKYLFQQYGNGNDPSPGLLESTLFTGWVPTILRAGRGMTLWEKAKPELAAERLELFSYENSLYARIVREALCELELPYILHNAEKGSSQIKTLLQLAGSDKVPYLIDPNTGVCLDNHKEIISYLFQTYCS
A9P1Z7______________PISFSILIKHSRCAANPQGHTHSGTSRNWLGSLSHATATRGLSTGGVENHKRLLSVRAKAEGSHGGPDREELQLQQRPQIEADDTTADVNMVNQGKGSSNVLSFLCPLLKFMGGVDPSLARNDIFEITTSGIATIARLPWGSQTLTTAAAMREEKGQPLKTLQLYEFEACPFCRRVREALTELDLSAEVYPCPKGSLKHRAIVRRYGGKEQFPYLMDPNTGVSLYESGDIVKYLFQEYGNGNNPSRGLLESTLFTGWVPTILRAGRGMTLWEKAQPELAAERLELFSYENSQYARIVREALCELELPYILHNAGKGSSKIKTLLQRAGSDKVPYLIDPNTGVCLDNHKEIISYLFQKYCS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
187			14	85	0.993533
188		85		14	0.993533
886		75		25	1.0
995	14		85		0.993533
1013			16	83	0.994512
1023	85		14		0.993533
1124	10	90			0.90298
1125		10	90		0.90298
1157			87	12	0.992554
1186			12	87	0.992554
1203	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain