SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8628

Length: 2647 nt

UniGene Fasta

>sp_v3.0_unigene8628
ATGGGGAGGCCCCGCTTTGAAAATGCGTATGACCGGAACCCAAACCTACAGCGGGTTGCAAGGCTAAAAACCCTCTGAACAAATTACAATTCATCTTGTAATTCCTATTTCTACGACTTTTCTTTCTAGCGTTGCCATTTCAACACGAAACCCCAATCTGTTTTGCAAACTATAGGCACTTTTCCGCTTTGATTTGCTTCGCTCGCAGAGGCGGATCGAATCGAGATACCCACTGTTTGCCGCTGAAGCTTCTCACGTCCCCAGTTCGAATCCCACAATGTGGCACGAAGCAAGGAGATCCGAGAGGAAAGTCCACGATTTGATGGACGCGGCCCGTCGTCGTGCCCAGCGACGTGCGGTTTACCTGGCAAAGCGGCGGGGGGATCCCCAGCAAAGTCTACTGCTTACAGGCAGTCGCTGCCGCTTGCACCACGACACGGTCCTCTATCAGGCCACTCAGGATCAACAAGGCTTAATACCCTGGAATGGAAAGCAAAACATTCTGATTGACAGGTTTGATGGTCGAGCACTTCTAGACTTCATCCGAGAGCCTGATCCCAAACTTTATCGGTCTCGAGAGAAAACTGAGGAAGAAGAAGAACTCGAGGAGTTTGTGAATTTTGAGCGTTATCGGGATTTAATTAAGCATCAGCGTAGAGGATGTCGTCAATGATGAAGAGGGTCTGGAGAATGTTGATCAAGAGCTGGAGGCAAGAGCTGCTGCACCTTTTTTATCAGACAGGTCAAATCCACAGGTGCCTTCAGCAAGCAAAGGCACTTATTCACAAGTTGGATTTGCATATGAAGGAGATGGCAAAGAAGAAAGCCAGCTTATAGGGAGTGACGACGAAGAAGATGATGAAGATGAAAAGGACAGCAGTACCGATGACAGTGAAGATGATGAGATTGAGATAATTGCAAAGGAGTATGGAGTGAAAAGATTCAATTGGCTTGTTTACATGGACCGAAAAGCGAAGGAAGAAGAGAAGCGGCAGAAGGAGGTGGCCAAGGGGGATCCTTCCATGAGAAAACTCAGTCGCAAGGAAAGAAGGAAAGCCTCTCAACAGGAAAGAGAGAGGGAGAAGGAGGCTGCGCGCATGGCAGGGAGTCGACTTGCCTATCATGATCCTTATAGGGAGCCCCGAAGAAGTCCAACATATGAAGCATATCCCAGATCACGAATATCGAGATCAAGATCACGGTCAGTTTCACCATCATATTCCAGGCGGCATGATCGTGGACGTGATGAGAACTCACGACGAAGGAACAAGACGAAGGATGCAACCTCGAAGATTGAATATATTACGGAATTTGGGAGCACAGCAGAAGGAGATGATTTCAAGTTAGCAGGAGTCTCTCCACCACCATCACCTCCATCTCAAGCTGATTTATTGAACCGGTCGGAGCACTGGACCTTTAAGACCTGCAACGATATCTTCGCCTCAATTTTGCTCTCCTGCAGCTTATTCTAATACTGCCTATTGGTCCCTTAAGGCAGTAATTTGGGTGATGTTGCAGTAGGTTTTGCATAGGGCTCACAAGCTTATAGCAGTGGGCCCTTACTTTTGGAGTTACAATAGCTGAATAAACTGGCCCTTTGTGGATAGTAGATGGGTGGGCTGCCTGCTAAATGGGCTCATCCTGAAGATTTTTTGGAAATGATATTCTAATGTCAATTCCCAAAATCTTCATAAAATCTTGCAATTTGATATAGTTGGCATCTTCTAATGTCTTTTTCTATGTTGCAGGCCTTCATCTGGTCGTATACTCGAGGCTCTTCATATGGATCCAGCTGCAGCTGTGACTCCTGATTGGGAAAGAAATCACAAAGAGCCTAAACAACCTGCCAGCACTTCATCAGCAATAGCAAAGTTGAACAAGGCTTCAAGTAATACTGGACCACCGGCGAAGCAGCAGCAGAATGAGAAAAAGGAAACCCCACAGGAACGCCTAAAGAGGATAATGAGCAAGCAGCTAAACAAACAAATTAAAAAGGATACTGTCGTGGAAATGGCAAAAAGGCGTGAGCAGGAGAGGCAGAGGCAGGAGAAACTGGCTGAGACAAGTAGAATTGCCAAGTATAGGCGCCGAAGCCGTAGTCGAAGTTACAGCCGCAGTCGCAGTCGTTCCCCTGTGAGGTATCGTCACAGCAGAAGCAGGAGCCCAAGAAGATACCATGCTCGCTCTCGTTCACCGAGAGTTCGGAGTCGATCCAGATACTAGTATCATATTCTTTTATCCTTCCTGACAGTGTATATTATATTTTGGCAGAAAGGATGTTGTGATCATATATTTGAAAGTTGATCGTGTCCTTTTTTCTCTTGATGTTCTTTTTCCTGTTTCATTGTAACAAAGACTCGATGTATTCATGGGCTGAATCTTCTGTTGTAAATGGATATGCTTCATCCAGGTTTTGGACTTTTTGGCCAATCTGTTTGAGTTTCTCACCTATTGTTTTCCATTTTAATGTCTGCATGCTACATTGGAAAAAATGAGTGCATATATCGAGTATTTCACTTCAAAAAAGGCACATCTTATATTTTTGAAGCCAGTATTATTTTATTCTGTATTGACAAACTAGGTTTTATTTCAACAATGAACAATTGATATTCAATTAACATAGATCCAGCTTATGTTCTGTTCTGTT

Ace file of the UniGene sp_v3.0_unigene8628

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor, arginine/serine-rich 16 [Arabidopsis thaliana] gb\|AEE86728.1\| splicing factor, arginine/serine-rich 16 [Arabidopsis thaliana]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	AT4g36980; At4g36980; C7A10.380; GSVIVT00019491001; LOC_Os03g27840; OSJNBb0004M10.11; Os03g0395900; OsI_11912; OsJ_11149; PHYPADRAFT_225191; PHYPADRAFT_71248; POPTRDRAFT_218683; POPTRDRAFT_558865; POPTRDRAFT_719291; RCOM_1408100; VITISV_032062;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	spermatogenesis	GO:0007283	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protamine P1	IPR000221	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36980.4	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). c	76%
RefSeq	Arabidopsis thaliana	NP_001190939.1	splicing factor, arginine/serine-rich 16 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002310726.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ6

Fln msg:

Fln protein: MWHEARRSERKVHDLMDAARRRAQRRAVYLAKRRGDPQQSLLLTGSRCRLHHDTVLYQATQDQQGLIPWNGKQNILIDRFDGRALLDFIREPDPKLYRSREKTEEEEELEEFVNFERYRDLIKHQRRGCRQ*

Protein Length: 133

Fln nts: ATGGGGAGGCCCCGCTTTGAAAATGCGTATGACCGGAACCCAAACCTACAGCGGGTTGCAAGGCTAAAAACCCTCTGAACAAATTACAATTCATCTTGTAATTCCTATTTCTACGACTTTTCTTTCTAGCGTTGCCATTTCAACACGAAACCCCAATCTGTTTTGCAAACTATAGGCACTTTTCCGCTTTGATTTGCTTCGCTCGCAGAGGCGGATCGAATCGAGATACCCACTGTTTGCCGCTGAAGCTTCTCACGTCCCCAGTTCGAATCCCACA_-_ATGTGGCACGAAGCAAGGAGATCCGAGAGGAAAGTCCACGATTTGATGGACGCGGCCCGTCGTCGTGCCCAGCGACGTGCGGTTTACCTGGCAAAGCGGCGGGGGGATCCCCAGCAAAGTCTACTGCTTACAGGCAGTCGCTGCCGCTTGCACCACGACACGGTCCTCTATCAGGCCACTCAGGATCAACAAGGCTTAATACCCTGGAATGGAAAGCAAAACATTCTGATTGACAGGTTTGATGGTCGAGCACTTCTAGACTTCATCCGAGAGCCTGATCCCAAACTTTATCGGTCTCGAGAGAAAACTGAGGAAGAAGAAGAACTCGAGGAGTTTGTGAATTTTGAGCGTTATCGGGATTTAATTAAGCATCAGCGTAGAGGATGTCGTCAATGA___TGAAGAGGGTCTGGAGAATGTTGATCAAGAGCTGGAGGCAAGAGCTGCTGCACCTTTTTTATCAGACAGGTCAAATCCACAGGTGCCTTCAGCAAGCAAAGGCACTTATTCACAAGTTGGATTTGCATATGAAGGAGATGGCAAAGAAGAAAGCCAGCTTATAGGGAGTGACGACGAAGAAGATGATGAAGATGAAAAGGACAGCAGTACCGATGACAGTGAAGATGATGAGATTGAGATAATTGCAAAGGAGTATGGAGTGAAAAGATTCAATTGGCTTGTTTACATGGACCGAAAAGCGAAGGAAGAAGAGAAGCGGCAGAAGGAGGTGGCCAAGGGGGATCCTTCCATGAGAAAACTCAGTCGCAAGGAAAGAAGGAAAGCCTCTCAACAGGAAAGAGAGAGGGAGAAGGAGGCTGCGCGCATGGCAGGGAGTCGACTTGCCTATCATGATCCTTATAGGGAGCCCCGAAGAAGTCCAACATATGAAGCATATCCCAGATCACGAATATCGAGATCAAGATCACGGTCAGTTTCACCATCATATTCCAGGCGGCATGATCGTGGACGTGATGAGAACTCACGACGAAGGAACAAGACGAAGGATGCAACCTCGAAGATTGAATATATTACGGAATTTGGGAGCACAGCAGAAGGAGATGATTTCAAGTTAGCAGGAGTCTCTCCACCACCATCACCTCCATCTCAAGCTGATTTATTGAACCGGTCGGAGCACTGGACCTTTAAGACCTGCAACGATATCTTCGCCTCAATTTTGCTCTCCTGCAGCTTATTCTAATACTGCCTATTGGTCCCTTAAGGCAGTAATTTGGGTGATGTTGCAGTAGGTTTTGCATAGGGCTCACAAGCTTATAGCAGTGGGCCCTTACTTTTGGAGTTACAATAGCTGAATAAACTGGCCCTTTGTGGATAGTAGATGGGTGGGCTGCCTGCTAAATGGGCTCATCCTGAAGATTTTTTGGAAATGATATTCTAATGTCAATTCCCAAAATCTTCATAAAATCTTGCAATTTGATATAGTTGGCATCTTCTAATGTCTTTTTCTATGTTGCAGGCCTTCATCTGGTCGTATACTCGAGGCTCTTCATATGGATCCAGCTGCAGCTGTGACTCCTGATTGGGAAAGAAATCACAAAGAGCCTAAACAACCTGCCAGCACTTCATCAGCAATAGCAAAGTTGAACAAGGCTTCAAGTAATACTGGACCACCGGCGAAGCAGCAGCAGAATGAGAAAAAGGAAACCCCACAGGAACGCCTAAAGAGGATAATGAGCAAGCAGCTAAACAAACAAATTAAAAAGGATACTGTCGTGGAAATGGCAAAAAGGCGTGAGCAGGAGAGGCAGAGGCAGGAGAAACTGGCTGAGACAAGTAGAATTGCCAAGTATAGGCGCCGAAGCCGTAGTCGAAGTTACAGCCGCAGTCGCAGTCGTTCCCCTGTGAGGTATCGTCACAGCAGAAGCAGGAGCCCAAGAAGATACCATGCTCGCTCTCGTTCACCGAGAGTTCGGAGTCGATCCAGATACTAGTATCATATTCTTTTATCCTTCCTGACAGTGTATATTATATTTTGGCAGAAAGGATGTTGTGATCATATATTTGAAAGTTGATCGTGTCCTTTTTTCTCTTGATGTTCTTTTTCCTGTTTCATTGTAACAAAGACTCGATGTATTCATGGGCTGAATCTTCTGTTGTAAATGGATATGCTTCATCCAGGTTTTGGACTTTTTGGCCAATCTGTTTGAGTTTCTCACCTATTGTTTTCCATTTTAATGTCTGCATGCTACATTGGAAAAAATGAGTGCATATATCGAGTATTTCACTTCAAAAAAGGCACATCTTATATTTTTGAAGCCAGTATTATTTTATTCTGTATTGACAAACTAGGTTTTATTTCAACAATGAACAATTGATATTCAATTAACATAGATCCAGCTTATGTTCTGTTCTGTT

Fln Alignment:

Contig8628___MWHEARRSERKVHDLMDXXXXXXXXXXVYLAKRRGDPQQSLLLTGSRCRLHHDTVLYQATQDQQGLIPWNGKQNILIDRFDGRALLDFIREPDPKLYRSRXXXXXXXXXXXFVNFERYRDLIKH
A9NVZ6______________MWHEARRSERKVHDLMDAARRRAQRRAVYLAKRRGDPQQSLQLTGTRCRLHHDTVLYQATQDQQGLIPWNGKQNILIDRFDGRALLDFIREPDPKLYRSREKTEEEEELEEFVNFERYRDLIKH

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
383	14		85		0.993533
384	88		11		0.923564
615			42	57	1.0
983	88		11		0.923564
1016			16	83	0.994512
1054	75		25		0.996473
1750	14	85			0.993533
1751	14	85			0.993533
1771	22		77		0.999999
1773			77	22	0.999999
1775		77		11	0.968132
1927	90		10		0.90298
2205	20		80		0.999996
2274	86		13		0.999973
2512		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
590	601	GAA GAA GAA GAA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain