SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8607

Length: 3393 nt

UniGene Fasta

>sp_v3.0_unigene8607
CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTATTTCTCCGTGTGTTAGTTCGAAATGATCAAATTTTCTTCATGATTCTTTCCCCAAAATTAAGTGTTTTCTTAAGCTGTCACATTTTGGCATCTGCATTTTTTGATCGGCGAAGCAACCACGGTGATCATGGACTCATAACCAAACCAACAGACCACCAAATGTTGGAAGGTGCCAGGTGGGTAAACCAGAGAGGGGAGGAATAGGGGTATTTAGTGGAGTACCCGCTGGAATCTCTGACACTGCTATAAAAACAGGTGGATGCGCCAGGTTACGGGTTCGAATTCTGCGTACGGTATACTCTACCCATCACAGTAAAAAAAACCAGAAACAGATCTACCCAAATGGAGATCCAGCTACAAGGGGGAGTGATGTTTGGGGTTTTTAATGGAAAATCCTTGAATTTTCTGAACCGGCATCGATGATCAATTAACCCATTCAGATATGAGGGCGAGGGATGTTTGGGGCTTTTAATAGGAAACTATTGAATTTTCTGGACCAGAATCGATGACCAGTTGACCCTTTTTAGGATTAAGATTATGCACATAAGATAAAATGCAGACTAAAACCAAGAGGAGAGGCGTGGTAGAGAATGGCGGTGACAAAGGGGAGGAATTAGCCTTAGCCTCTGCAATCGGTAATGGAGAAGATTTGGGTTCAATCATTAGACAAGCATTTGAGGTTGGGAAGCCAGAATCTCTATTGCAACAGCTCAAATATTTTGTCAAGAAAAAAGAGATTGAAATAGAGGACTTATGTAAAGTTCATTATGAGGAATTCATCCATGCAGTGGATGAGCTCCGTGGGGTTTTAGTAGACGCGGATGAGTTAAAGAATGGGCTAGCCAATGAGAATTATCAGCTTCAACAAGTGGGTAATTCTCTCCTGGCTAAAGTTGAAGAGCTTCTAGAGGCTTATGCGATTAAGAAGAACTTAACAGAAGCGATCCAGTCATCGAAAATCTGTGCACAGGCCATGGAGTTGTGTGTGAAATGCAACCAACATGTTATAAATGATAGTTACTACCCCGCATTGAAAACTTTAGACTCGATAGAAAGAGATTACTTGCATAGAATTCCGGCGAAGGCGCTCCAGCAAATGCTAGAAAAGAAGATCCCTGAAATCAAATCCCACATCGAGAAAAGAGTGAACAAGGAATTCAATGATTGGCTAGTGAAGATTAGGAGTACTGCTAAAGAAATTGGTCAGTTGGCAATCGGGCAAGCTTCTTCAGCTCGGCAGAGAGAAGAGGAGCTGCGAGGCCGGCAAAAGCAGGCAGAGGAACAGAGCAGGTCAGGTGTAAGGGAATGTGTATATGCTTTAGACACGGAGGATACGGAAGATGCTGATTCTGTTTTGAAATTCGACATCACTCCAGTTTATAGGGCACACCATATCCAGACTTGTCTTGGCCTCCAAGACCAGTTCCGGGATTACTACTATACAAATCGTCAGCTGCAGCTTAATTCAGATTTGCAAATCTCATCTGTGCAGCCTTTTCTAGAATCACATCAGTTTTTCTTTGCTCAGATTGCTGGGTTTTTCATAGTAGAAGACTGTGTTTTGAGGATGGCTGGAGGATTAATCTCCACTCCCCAGGTGGAAATAATGTGGGATACAGCTGTAGCAAAGATGAGCTATATTTTAGAGGATCAGTTTTCGCGTATGCAGGTTGCAAGCCATCTTCTGCTTATCAAGGACTATGTGAGTCTACTTGGTGTGACTTTGAGAAGATATGGCTACCAGGTGGGTCCTTTGCTTGATATTTTGGACAAGAACAGAGATAAATATCATGAACTTCTTCTCAATGAATGCAGAAAACAGATCAATGATGTCCTTGCTAATGACAAATATGAGCAGATGGTGATGAAAAAAGAGTATGAGTACAACATGAACGTGTTGGCATTCCATTTACAGACATCAGATATCATGCCTGCTTTCCCCTACATTGCACCGTTTTCTGCCACAGTGCCTGATTGTTGTCGTATTGTGAGGTCTTTCATAGAGGATTCTGTGAGCTATCTGTCCTATGGAGGTCACATGGACTTCTACGATGTTGTGAAGAAGTATCTAGACAAGCTTTTGATCAATGTTATGAATGAGGCTTTACTCAAATTGATCAACATTTCCACGCTGGGGGTATCTCATGCCATGCAGATTGCTGCCAATATGACAGTTTTGGAGCGAGCTTGTGACTTTTTTATGCAGCATGCTGCCCAACTTTGTGGCATTCCTATGCGCTTGGCAGAAAGGCCACATGCTGCATTGTCTGCTCGAACTGTCTTGAAGAATTCTCAAGATGCTGCACATGAAGCGATGCTGAGGCTAGTCAAGTCTAAGGTGGATGAGTTTATGTTGCTAACTGACAACATCAATTGGAACCCAGATGAAGTTCCACAAAATGGCAACGAGTATCTAAATGAGGTGGTAATTTACTTGGAAACGTTGGTTTCTACAGCACAGCAAATATTACCATTGGATGCTTTGGAGAAGGTAGGAAGGGGGGTGTTGAAGCACATATCAGACTGCCTCATGGTGACACTTATGAGGGACAATGTCAAAAGATTCAATATAAATGCTATAATGGGTATTGATAATGATTTAAGAGTGCTAGAGTCCTTTGCCGAGGAGAGATTCCACAGCACTGGCTTGAGTGAGCTTCATGGTGCTACAAGTTTGAAGGACTGCTTGGCAGAAGTGCGGCAGCTGGTTAATCTTTTATTGAGCAACCAGCCAGAGAACTTCATGAACCCTGTTATAAGGGAGAAACACTACAATGCTTTGGATTATAGAAAGGTTGCAGTGATTTCTGAGAAATTCAGAGATGCACCTGAAAGGCTATTTGGAAGCTTGGGGGGTAGGAATTTAAAGCAAAATCCCAGAAAGAAGTCCATGGATACTTTAGTAAGGAGATTGAAAGATTTCAACTGACAGATTCAATGGTTCTATTACATTCTGCTTTTTGACAGGAGCTCTTCATTTTGGCATATTTGATTCATATTTCTATTACTGTTGCACTACAAAGGCATTCAGGTAGCATGCTTAGCTGGTTGATGTATTTAACAAATAACAATATACTGTAAGCTATGGAATATCTAAAACATGGAATATCCAATTTTTTCACAGTTGGGTGCCTTAGGGTTTCTCAACATGTGTTATTTCTTTTAGCTTGAAGTGGTAATCTGAACTGCTTTTATCATTTCTTTGAAATCTCATGGCTTTGTGTCTGTTAAATGTTTTCCCATGCTATTCTTTTGACAAAAAGATTCATCTTTCCTTTCTAGATGAGCATGTAACCGGTTACTCCAATATCATTTTTCCTTGACAACGATATTTCTAACCTACTAAGTTGCTTATTTACC

Ace file of the UniGene sp_v3.0_unigene8607

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam04091, Sec15, Exocyst complex subunit Sec15-like	-	-	0.0	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Sec15, putative	-	-	3.006e-09	-

Source	Gene names
Sma3	AT4g02350; At3g56640; At4g02350; B1051E10.57; GSVIVT00023299001; GSVIVT00028028001; LOC_Os03g06760; LOC_Os10g27990; OJ1123F12.17; OJ1607A12.3; Os01g0351300; Os03g0163500; Os10g0415200; OsI_01833; OsI_10135; OsI_33568; OsJ_01695; OsJ_09519; OsJ_31516; P046

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	vesicle docking involved in exocytosis	GO:0006904	Biological Process	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	Exocyst complex subunit Sec15-like	IPR007225	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	Vacuolar protein sorting-associated protein 51	IPR014812	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56640.1	SEC15A exocyst complex component sec15A chr3:20981964-20984336 FORWARD LENGTH=790	61%
RefSeq	Arabidopsis thaliana	NP_191223.2	putative exocyst complex component 6 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002308866.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLJ6

Fln msg:

Fln protein: MRQVTGSNSAYGILYPSQ*

Protein Length: 20

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTCTATTTCTCCGTGTGTTAGTTCGAAATGATCAAATTTTCTTCATGATTCTTTCCCCAAAATTAAGTGTTTTCTTAAGCTGTCACATTTTGGCATCTGCATTTTTTGATCGGCGAAGCAACCACGGTGATCATGGACTCATAACCAAACCAACAGACCACCAAATGTTGGAAGGTGCCAGGTGGGTAAACCAGAGAGGGGAGGAATAGGGGTATTTAGTGGAGTACCCGCTGGAATCTCTGACACTGCTATAAAAACAGGTGG_-_ATGCGCCAGGTTACGGGTTCGAATTCTGCGTACGGTATACTCTACCCATCACAGTAA___AAAAAACCAGAAACAGATCTACCCAAATGGAGATCCAGCTACAAGGGGGAGTGATGTTTGGGGTTTTTAATGGAAAATCCTTGAATTTTCTGAACCGGCATCGATGATCAATTAACCCATTCAGATATGAGGGCGAGGGATGTTTGGGGCTTTTAATAGGAAACTATTGAATTTTCTGGACCAGAATCGATGACCAGTTGACCCTTTTTAGGATTAAGATTATGCACATAAGATAAAATGCAGACTAAAACCAAGAGGAGAGGCGTGGTAGAGAATGGCGGTGACAAAGGGGAGGAATTAGCCTTAGCCTCTGCAATCGGTAATGGAGAAGATTTGGGTTCAATCATTAGACAAGCATTTGAGGTTGGGAAGCCAGAATCTCTATTGCAACAGCTCAAATATTTTGTCAAGAAAAAAGAGATTGAAATAGAGGACTTATGTAAAGTTCATTATGAGGAATTCATCCATGCAGTGGATGAGCTCCGTGGGGTTTTAGTAGACGCGGATGAGTTAAAGAATGGGCTAGCCAATGAGAATTATCAGCTTCAACAAGTGGGTAATTCTCTCCTGGCTAAAGTTGAAGAGCTTCTAGAGGCTTATGCGATTAAGAAGAACTTAACAGAAGCGATCCAGTCATCGAAAATCTGTGCACAGGCCATGGAGTTGTGTGTGAAATGCAACCAACATGTTATAAATGATAGTTACTACCCCGCATTGAAAACTTTAGACTCGATAGAAAGAGATTACTTGCATAGAATTCCGGCGAAGGCGCTCCAGCAAATGCTAGAAAAGAAGATCCCTGAAATCAAATCCCACATCGAGAAAAGAGTGAACAAGGAATTCAATGATTGGCTAGTGAAGATTAGGAGTACTGCTAAAGAAATTGGTCAGTTGGCAATCGGGCAAGCTTCTTCAGCTCGGCAGAGAGAAGAGGAGCTGCGAGGCCGGCAAAAGCAGGCAGAGGAACAGAGCAGGTCAGGTGTAAGGGAATGTGTATATGCTTTAGACACGGAGGATACGGAAGATGCTGATTCTGTTTTGAAATTCGACATCACTCCAGTTTATAGGGCACACCATATCCAGACTTGTCTTGGCCTCCAAGACCAGTTCCGGGATTACTACTATACAAATCGTCAGCTGCAGCTTAATTCAGATTTGCAAATCTCATCTGTGCAGCCTTTTCTAGAATCACATCAGTTTTTCTTTGCTCAGATTGCTGGGTTTTTCATAGTAGAAGACTGTGTTTTGAGGATGGCTGGAGGATTAATCTCCACTCCCCAGGTGGAAATAATGTGGGATACAGCTGTAGCAAAGATGAGCTATATTTTAGAGGATCAGTTTTCGCGTATGCAGGTTGCAAGCCATCTTCTGCTTATCAAGGACTATGTGAGTCTACTTGGTGTGACTTTGAGAAGATATGGCTACCAGGTGGGTCCTTTGCTTGATATTTTGGACAAGAACAGAGATAAATATCATGAACTTCTTCTCAATGAATGCAGAAAACAGATCAATGATGTCCTTGCTAATGACAAATATGAGCAGATGGTGATGAAAAAAGAGTATGAGTACAACATGAACGTGTTGGCATTCCATTTACAGACATCAGATATCATGCCTGCTTTCCCCTACATTGCACCGTTTTCTGCCACAGTGCCTGATTGTTGTCGTATTGTGAGGTCTTTCATAGAGGATTCTGTGAGCTATCTGTCCTATGGAGGTCACATGGACTTCTACGATGTTGTGAAGAAGTATCTAGACAAGCTTTTGATCAATGTTATGAATGAGGCTTTACTCAAATTGATCAACATTTCCACGCTGGGGGTATCTCATGCCATGCAGATTGCTGCCAATATGACAGTTTTGGAGCGAGCTTGTGACTTTTTTATGCAGCATGCTGCCCAACTTTGTGGCATTCCTATGCGCTTGGCAGAAAGGCCACATGCTGCATTGTCTGCTCGAACTGTCTTGAAGAATTCTCAAGATGCTGCACATGAAGCGATGCTGAGGCTAGTCAAGTCTAAGGTGGATGAGTTTATGTTGCTAACTGACAACATCAATTGGAACCCAGATGAAGTTCCACAAAATGGCAACGAGTATCTAAATGAGGTGGTAATTTACTTGGAAACGTTGGTTTCTACAGCACAGCAAATATTACCATTGGATGCTTTGGAGAAGGTAGGAAGGGGGGTGTTGAAGCACATATCAGACTGCCTCATGGTGACACTTATGAGGGACAATGTCAAAAGATTCAATATAAATGCTATAATGGGTATTGATAATGATTTAAGAGTGCTAGAGTCCTTTGCCGAGGAGAGATTCCACAGCACTGGCTTGAGTGAGCTTCATGGTGCTACAAGTTTGAAGGACTGCTTGGCAGAAGTGCGGCAGCTGGTTAATCTTTTATTGAGCAACCAGCCAGAGAACTTCATGAACCCTGTTATAAGGGAGAAACACTACAATGCTTTGGATTATAGAAAGGTTGCAGTGATTTCTGAGAAATTCAGAGATGCACCTGAAAGGCTATTTGGAAGCTTGGGGGGTAGGAATTTAAAGCAAAATCCCAGAAAGAAGTCCATGGATACTTTAGTAAGGAGATTGAAAGATTTCAACTGACAGATTCAATGGTTCTATTACATTCTGCTTTTTGACAGGAGCTCTTCATTTTGGCATATTTGATTCATATTTCTATTACTGTTGCACTACAAAGGCATTCAGGTAGCATGCTTAGCTGGTTGATGTATTTAACAAATAACAATATACTGTAAGCTATGGAATATCTAAAACATGGAATATCCAATTTTTTCACAGTTGGGTGCCTTAGGGTTTCTCAACATGTGTTATTTCTTTTAGCTTGAAGTGGTAATCTGAACTGCTTTTATCATTTCTTTGAAATCTCATGGCTTTGTGTCTGTTAAATGTTTTCCCATGCTATTCTTTTGACAAAAAGATTCATCTTTCCTTTCTAGATGAGCATGTAACCGGTTACTCCAATATCATTTTTCCTTGACAACGATATTTCTAACCTACTAAGTTGCTTATTTACC

Fln Alignment:

Contig8607___MRQVTGSNSAYGILYP-SQ*KKPETDLPKWRS
A9NLJ6______________MPQVSGSNFMYGILYPVGSVKKPETDLPKWRS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
144	10	90			0.90298
145			90	10	0.90298
146	90		10		0.90298
147	90		10		0.90298
149		90	10		0.90298
530			83	16	0.994512
719	14		85		0.993533
2391	11		88		0.923564
2394	88			11	0.923564
2412	16		83		0.994512
2413	83	16			0.994512
2415		83		16	0.994512
2416		83		16	0.994512
2533	80		20		0.995493
2886	9		63		1.0
3230			20	80	0.995493
3316	25		75		0.996473
3337		25		75	0.996473
3347	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain