SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8594

Length: 1335 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Viroid symptom modulation protein n=2 Tax=Solanum RepID=Q9M728_SOLLC	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Serine/threonine protein kinase, putative	-	-	3.605e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	6.997e-18	-
Sma3	Protein kinase C.	EC:2.7.11.13	-	5.869e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		5.869e-07	%

Source	Gene names
Sma3	AGC1-10; AT4g13000; AT4g26610; ATPK64; AcNPH1; Adi3; At1g16440; At1g51170; At1g53700; At1g79250; At2g26700; At2g34650; At2g36350; At2g44830; At3g12690; At3g20830; At3g25250; At3g27580; At3g45780; At3g52890; At4g13000; At4g13000/F25G13_90; At4g26610; At5g0

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	internal side of plasma membrane	GO:0009898	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	blue light photoreceptor activity	GO:0009882	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	sensory perception	GO:0007600	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	chloroplast relocation	GO:0009902	Biological Process	-
Sma3	chloroplast avoidance movement	GO:0009903	Biological Process	-
Sma3	chloroplast accumulation movement	GO:0009904	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	regulation of proton transport	GO:0010155	Biological Process	-
Sma3	negative regulation of anion channel activity by blue light	GO:0010362	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: your sequence is shorter than subject: 342 - 385

Fln protein: VSKVFLVVHRRSKKLYALKVMSKDVGRQGGAAPIRYASVEKDILSTLNHPFLPSLFTYFESDNHTFLAMKYCSGGDMNVLRLSQPNQTFSESAARFYAAEIILALEYLHNQGIVYRDLKPENVLVQDNGHIMLSDFDLSLRLSSRGQIPANDAGCPTKYDKFSNSRSNFNWRSDRFKVKGDFSSHKSKSANSSPTEFRHSRSHSLVGTREYIAPEILWCTGHSFPVDWWAFGIFLYEMINGRTPFCGANRKETFFNIMCKDPLFAGPYSALQDLIKKLLVKEPSKRLGSLRGVEEVKDHEFFRGLRWDALEFVDRPPFLPFLTSAVEEINSEIEDQSSESQ*

Protein Length: 343

Fln nts: GTGAGTAAGGTGTTTCTGGTTGTGCACCGCAGAAGCAAGAAGCTTTACGCTCTGAAAGTGATGAGCAAAGACGTTGGCCGCCAAGGAGGTGCTGCGCCCATCAGATATGCTTCTGTTGAGAAAGATATCCTCTCTACGTTGAATCACCCTTTTCTTCCTTCTCTTTTCACATATTTTGAATCGGATAATCACACTTTTCTGGCTATGAAGTATTGCTCTGGGGGAGATATGAATGTGTTGCGTCTCAGTCAGCCCAATCAAACCTTCTCTGAATCTGCAGCAAGGTTCTATGCTGCTGAAATAATTCTGGCACTGGAGTATTTGCATAACCAGGGAATCGTGTACAGAGATTTGAAGCCTGAGAATGTATTAGTGCAAGATAATGGTCATATCATGCTCTCTGATTTTGATCTCTCCCTCCGGCTCTCTTCCAGAGGACAAATCCCGGCCAACGATGCTGGGTGCCCTACAAAATATGACAAGTTTTCTAATTCTAGGTCTAACTTCAACTGGAGATCAGACAGGTTCAAAGTCAAGGGCGATTTCAGTTCCCATAAGTCGAAATCTGCTAACAGTTCCCCAACTGAATTCAGGCATTCACGTTCCCATTCATTAGTAGGAACGAGGGAGTACATAGCACCAGAGATTCTGTGGTGTACTGGCCATTCTTTTCCGGTGGATTGGTGGGCCTTTGGGATTTTTCTCTACGAGATGATCAATGGCCGCACACCCTTCTGTGGGGCTAACAGAAAAGAGACCTTCTTCAACATTATGTGCAAAGATCCTCTCTTCGCGGGGCCTTACTCGGCCCTGCAAGATTTGATCAAGAAGCTGCTGGTGAAAGAACCCTCCAAAAGGCTGGGATCTTTACGAGGAGTGGAAGAAGTGAAAGATCATGAGTTCTTCCGTGGGCTGAGATGGGATGCACTGGAATTTGTGGACAGGCCTCCATTTCTTCCTTTTCTTACCTCTGCAGTTGAAGAAATAAATTCAGAGATTGAAGACCAATCCAGTGAATCCCAATAG___ATCGAAACCAAGAAAAGTTTAATCTCAGATGATGAATTCTCTTGCAGTGACAAATCTACACTTTGATGAGCAGCTCTCAAGCGTAGATACCTCAATTAAGATTAAACCACAAGACCTATAAGACCAAATCTCCTCACTCAATTATTAAACCACATCCCCAAAACTACTCTATCATATTTATTGTTCATAGCTTTTCTGCTTCCTGCTATATATTATAGAGTTCTATAAGTGCAGAATCTCTCATAAGAGGGCTTGAGCCTAAGTTAAAGCTCGTTACATTATTTATTTATTTCATTTTACTTTACTTCA

Fln Alignment:

Contig8594___VFLVVHRRSKKLYALKVMSKDVGRQGGAAPIRYASVEKDILSTLNHPFLPSLFTYFESDNHTFLAMKYCSGGDMNVLRLSQPNQTFSESAARFYAAEIILALEYLHNQGIVYRDLKPENVLVQDNGHIMXXXXXXXXXXXXXGQIPANDA-----GCPTKYDKXXXXXXXXXXXXXXXKVKGDFXXXXXXXXXXXPTEFRH---------SRSHSLVGTREYIAPEILWCTGHSFPVDWWAFGIFLYEMINGRTPFCGANRKETFFNIMCKDPLFAGPYSA-LQDLIKKLLVKEPSKRLGSLRGVEEVKDHEFFRGLRWDALEFVDRPPFLP
A9NPF9______________VYLAKHMTSGKPVAMKVMSKELMQKKRSH--KRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
700		20		80	0.999996
904		11		88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1305	1318	TTAT TTAT TTAT TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain