SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8579

Length: 1374 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8579

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucoanthocyanidin dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9RXC5_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Leucoanthocyanidin dioxygenase, putative	-	-	2.546e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonol synthase.	EC:1.14.11.23	-	7.281e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	7.281e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	7.281e-08	%
Sma3	Metabolic pathways	01100	7.281e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	7.281e-08	%

Source	Gene names
Sma3	AT4g16330; At2g38240; At2g38240/F16M14.17; At3g11180; At3g21420; At3g55970; At4g16330; At5g05600; EFE; F11B9.11; F27K19_150; F3H; F9F8.3; GSVIVT00000477001; GSVIVT00019762001; GSVIVT00026183001; GSVIVT00029301001; GSVIVT00033948001; GSVIVT00037165001; GSV

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16330.2	-	64%
RefSeq	Arabidopsis thaliana	NP_001190740.1	oxidoreductase [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002317200.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADL4

Fln msg: your sequence is longer than subject: 357 - 261

Fln protein: MDLLSSKHGECIDRVQALIQNGLKQVPDEYIQPPSLRPTITIHNSSLSNQAPVIDLSEFHTNSLERIRYEVGQACREWGVFQVINHGVPTRLLEEMKDVGLKFFECPLEEKLQYACKSGSAASEGYGSRMLVKEDQILDWRDYFDHHTLPLSRRNPSRWPHHPPSYRETVEKYSEQMKLLAQRLLTAISESIGLPSSYIQEVIGEPYQNITISYYPPCPQPELTLGLQAHSDMGAITLLIQDEVGGLQVLKDGQWITVQPLPDAIVVNLGDQTQILTNGAYKSVEHRAIVNALRARLSVATFYDPSKQTRICPAPELATKDSPPRYREVIYGDYVSAWYTKGPEGKRNIDRLAVDS*

Protein Length: 358

Fln nts: AGCCAGCATTACCCACGCTAATAATTAGCGTGCATTTGCTAT_-_ATGGATCTGCTAAGCAGCAAACATGGTGAGTGTATTGACAGAGTGCAGGCACTGATACAAAATGGACTAAAACAGGTGCCCGACGAATACATTCAACCTCCAAGCCTGAGACCCACAATCACAATTCACAACTCTTCTTTATCCAACCAGGCACCAGTGATTGATTTATCTGAATTCCATACAAACAGTCTGGAACGAATCAGATATGAAGTAGGGCAGGCGTGCAGGGAGTGGGGTGTTTTTCAGGTAATTAATCATGGAGTGCCCACAAGACTTCTCGAAGAGATGAAAGATGTTGGGCTGAAATTCTTTGAGTGCCCACTTGAGGAAAAGTTGCAGTATGCCTGTAAATCTGGGTCAGCTGCCTCAGAAGGTTATGGTAGCAGGATGCTCGTTAAGGAGGACCAGATTTTGGACTGGAGGGATTATTTTGATCACCACACTCTGCCACTTTCCAGGAGGAATCCCAGCAGATGGCCTCACCATCCACCTTCATATAGGGAAACAGTCGAGAAGTATAGTGAGCAGATGAAGTTGCTTGCACAAAGGCTGCTTACTGCTATATCTGAAAGCATTGGTCTTCCATCTTCCTATATCCAGGAAGTAATTGGAGAACCCTATCAGAATATTACTATCAGCTATTATCCACCATGCCCTCAGCCAGAGCTTACTTTGGGTTTGCAAGCACATTCTGACATGGGTGCAATAACACTTCTGATACAAGATGAAGTGGGAGGTCTGCAAGTTCTTAAAGATGGGCAATGGATAACTGTGCAGCCTTTGCCTGATGCTATTGTTGTGAATTTGGGTGATCAAACTCAGATTTTGACAAACGGAGCATACAAGAGTGTGGAGCACCGAGCTATAGTCAATGCTCTAAGGGCACGGCTTTCTGTTGCAACATTCTACGATCCTTCGAAGCAAACGAGGATATGTCCAGCTCCAGAACTTGCTACTAAAGATTCCCCTCCTAGATACAGGGAGGTTATTTATGGGGATTACGTCTCTGCATGGTATACCAAAGGTCCGGAAGGTAAAAGGAATATTGATAGATTGGCAGTTGATAGTTAG___TAAGCTTTTGTTCCAAAGCATCGGCTGCTCCTTCAAAATAATGTAATATTTGAATGTTTGAATCGATGTCAAACATTTTAGAACTCTTGTATAAAGCATCAGTTGTCCTTTCAAAATAAGGTAACATTTGGATGTTGGAATCCATGTCACATTTTAGAACTCTTGTATATTGTTGTATGAATAAAACACGAATGTATTGCTAACTAGATACATTCGTTCTTTTGTTGAAGCATAATTTTGAAAGTACATATTGAATCCGTT

Fln Alignment:

Contig8579___MKDVGLKFFECPLEEKLQYACKSGSAASEGYGSRMLVKEDQILDWRDYFDHHTLPLSRRNPSRWPHHPPSYRETVEKYSEQMKLLAQRLLTAISESIGLPSSYIQEVIGEPYQNITISYYPPCPQPELTLGLQAHSDMGAITLLIQDEVGGLQVLKDGQWITVQPLPDAIVVNLGDQTQILTNGAYKSVEHRAIVNALRARLSVATFYDPSKQTRICPAPELATKDSPPRYREVIYGDYVSAWYTKGPEGKRNIDRLAVDS
D5ADL4______________MKDIGLKFFECPLEEKLQYACKSGSAASEGYGSRMLVKDDQVLDWRDYFDHHTLPLSRKNPCRWPHHPPSYRETVQKYSEQMKLLAQRLLTVISESIGLPSSYIQEVIGEPYQNITISYYPPCPQPELTLGLQAHSDMGAITLLIQDEVGGLQVLKDGQWITVQPLPDAIVVNLGDQTQILTNGAYKSVEHRAIVNALRARLSVATFYDPSKQTRICPAPELATKDSPPRYREVIYGDYVSAWYTKGPEGKRNIDRLAVDS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
438		16		83	0.994512
494		66		33	1.0
659	20	80			0.995493
660		80		20	0.995493
661		80	20		0.995493
662			20	80	0.995493
663	80		20		0.995493
716		33		66	1.0
797	15		84		0.999986
903	14		85		0.993533
1120		10		90	0.90298
1153	60			40	1.0
1154	20			60	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain