SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8558

Length: 1175 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8558 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] ref\|NP_001189801.1\| leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] sp\|Q8LFN2.1\|Y3037_ARATH RecName: Full=Probable inactive leucine-rich repeat receptor-like pro	-	-	0.0	50%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	34%
Sma3	Leucine-rich repeat protein, putative	-	-	3.962e-16	-

Source	Gene names
Sma3	AT3G03770; AT5G14210; AT5G63410; At3g03770; At5g14210; At5g63410; F20H23.20; GSVIVT00002645001; GSVIVT00003816001; GSVIVT00017911001; GSVIVT00020542001; LOC_Os03g57780; LOC_Os11g20360; LRR-RLK; MtrDRAFT_AC148965g10v2; OJ1641_C04.121; ORK17; OSJNBb0060J21.

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G03770.1	Leucine-rich repeat protein kinase family protein chr3:945303-948436 REVERSE LENGTH=802	58%
RefSeq	Arabidopsis thaliana	NP_001189801.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002325432.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 773 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 295 - 1145

Fln protein: MFVQALNTVLPNMSCARKTTQKSMARGKASFSYSKWAVLIPILILVLLPGSQQFQSSNVQTLLRLQKLLEYPSALKGWNNNTDFCNLTPTSSVTIVCYEGAITQLKIVGDKGSPQKGNSTFSISNQTLSSSFSIDSFLTTLYKLSSLKVLSVASLGIWGPLPAKIGRLSSLVILNITSNFFYGNFPQELSLQRNLQTLILDNNMLNGTVPDWISALPGLTSLSLKNNLLSGPLPISLSTLQNLRVLQLSGNQLSGDLPDLSSLTNLQELDLQGNSLGPMFPILGNKQIVKLVLSK

Protein Length: 296

Fln nts: ATGGGAGAAATGCTTTTCCTGTGGCATGGATTCCCTCCTCAGCATCTTGCTCATACGAGGACCACGGATTCATGTCGAAGGATTAGTGTTCTCAATGTTCAGTGCACTGCATTGCTGAATTTGGGAGATCGCCATTCACTCCGAGATAGGTTAAAGCTCTAGAGAGCAACCAGCACTGTAGAAGGATTTGGGTAATTGGTTTCTGCACTGTTGCGTACTGTTTTGCATTGCAGATTATGCAACGAGAGGATACTTGGGTTCATGCTCTCAAGGCTTGAGTTTAGAAACT_-_ATGTTTGTGCAAGCACTCAATACAGTTCTACCCAATATGAGTTGTGCAAGGAAAACGACGCAGAAATCAATGGCAAGAGGTAAAGCCTCATTCTCTTACTCCAAGTGGGCAGTGCTGATTCCAATCCTTATTCTGGTTCTCCTGCCTGGTTCTCAACAATTCCAGTCTTCTAATGTCCAGACCCTGCTGAGACTTCAGAAGCTCTTGGAGTACCCCAGTGCATTAAAAGGCTGGAACAACAATACAGATTTTTGCAATCTTACTCCTACTTCATCTGTCACCATTGTATGCTACGAGGGCGCAATAACACAACTGAAAATTGTGGGTGACAAGGGCTCTCCTCAAAAGGGAAATAGTACGTTTTCTATTTCAAACCAGACTCTATCATCATCTTTTTCAATAGATTCATTTTTAACCACCCTCTACAAGCTTTCAAGTCTTAAAGTTCTCTCTGTGGCATCTCTGGGAATCTGGGGTCCTCTACCAGCAAAGATAGGTCGCTTATCCTCGCTTGTGATACTAAATATCACTTCAAATTTTTTCTATGGAAACTTTCCACAGGAGCTTTCTCTTCAGAGGAATCTGCAGACCTTAATACTAGACAATAATATGTTGAATGGCACAGTGCCTGACTGGATAAGCGCCCTCCCTGGTCTAACTTCTCTGAGCTTGAAGAACAACTTGTTAAGTGGTCCTCTGCCGATCTCTCTGAGTACATTGCAAAACCTCAGAGTGTTACAACTTTCAGGAAATCAGTTGTCTGGGGATTTGCCAGACCTCAGCAGCTTGACAAACTTGCAAGAACTTGATTTGCAGGGCAATAGTCTTGGACCCATGTTCCCAATTCTGGGAAACAAACAAATTGTCAAGCTTGTATTGAGCAAAA

Fln Alignment:

Contig8558___IWGPLPAKIGRLSSLVILNITSNFFYGNFPQELSLQRNLQTLILDNNMLNGTVPDWISALPXXXXXXXXXXXXXXXXPISLSTLQNLRVLQLSGNQLSGDLP-DLSSLTNLQELDLQGNSLGPMFP
Q9FEU2______________IEGTLPDELSNCTNLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIP

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
140		12		87	0.992554
141		12	87		0.992554
142	75	12			0.975346
144	87			12	0.992554
190	14		85		0.993533
293		16		83	0.994512
294	83	16			0.994512
296			83	16	0.994512
299		80		20	0.995493
366	20			80	0.995493
453		20		80	0.995493
454		20		80	0.995493
455		20	80		0.995493
457	80			20	0.995493
505		25		75	0.996473
706	33		66		0.997452
721	66		33		0.997452
761	75		25		0.996473
1096	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain