SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8543

Length: 1162 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8543

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative zinc transporter n=1 Tax=Solanum lycopersicum RepID=A1YIQ6_SOLLC	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Zinc transporter, putative	-	-	1.706e-16	-

Source	Gene names
Sma3	12.t00028; 12.t00049; At1g55910; At5g59520; F14J16.16; GSVIVT00024285001; GSVIVT00033348001; GSVIVT00033350001; GSVIVT00033352001; GSVIVT00033353001; LOC_Os03g29850; MtrDRAFT_AC157503g1v2; Os01g0972200; Os03g0411800; Os03g29850; OsI_05391; OsI_05394; OsI_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transposase activity	GO:0004803	Molecular Function	-
Sma3	copper ion transmembrane transporter activity	GO:0005375	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	transposition, DNA-mediated	GO:0006313	Biological Process	-
Sma3	zinc ion transport	GO:0006829	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59520.1	ZIP2 ZRT/IRT-like protein 2 chr5:23991447-23992762 REVERSE LENGTH=353	50%
RefSeq	Arabidopsis thaliana	NP_200760.1	zinc transporter 2 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002300374.1	ZIP transporter [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZA5

Fln msg: your sequence is shorter than subject: 301 - 358

Fln protein: RWNESFLLLGTQFAAGVFLGTAWMHFLSDSVETFEDLTDKTYPFAFMLCTAGYLVTMLADIIIVWVYEKQDQSSSIHSASPLQEPARNDEIGSGVHKYIDQTTLNFEDHPTANRGVHMMAHPTPNGGVPHMMTASLVKKTSVGDSLLLILALCFHSVFEGIAIGVSATKRDAWKALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPIGIAIGILIDATTEGRVADWIYAISMGFACGVFVYVAINHLLMKGLIQNPLKGVIRFDKPFYKYLAVLTGAGLIAVVMNWDT*

Protein Length: 302

Fln nts: ACAGATGGAACGAGAGCTTTCTTTTGCTGGGAACTCAGTTCGCAGCTGGCGTCTTCCTGGGGACGGCTTGGATGCATTTTCTCAGTGATTCTGTAGAAACATTTGAAGATTTGACAGACAAGACATATCCTTTTGCGTTCATGCTCTGTACTGCAGGCTACCTTGTTACCATGCTCGCAGACATCATCATCGTTTGGGTGTATGAAAAGCAAGATCAGTCATCCAGCATACACAGTGCAAGTCCTCTTCAAGAACCGGCTCGTAATGATGAAATCGGAAGTGGAGTGCACAAATATATTGACCAGACAACGCTGAATTTTGAGGACCACCCAACAGCAAATAGAGGAGTGCACATGATGGCCCACCCAACACCCAATGGAGGAGTGCCGCACATGATGACGGCCTCACTGGTAAAGAAGACCTCCGTCGGAGACAGTTTATTGCTCATACTCGCACTGTGTTTTCATTCTGTATTTGAAGGGATCGCCATCGGTGTTTCAGCGACGAAGCGTGACGCCTGGAAAGCTCTGTGGACAGTGTGTTTGCATAAGATATTCGCTGCAATTGCAATGGGCATAGCCCTGTTGCGCATAATTCCCAACAGGCCCTTCCTCTCCTGTGCAGCGTACGCCTTCGCCTTTGCGATTTCGAGCCCCATTGGAATTGCCATTGGAATACTTATTGATGCCACTACAGAGGGCCGAGTGGCAGACTGGATTTATGCAATCTCAATGGGTTTTGCGTGCGGTGTTTTCGTTTATGTTGCCATCAACCATCTTCTGATGAAAGGATTAATACAGAACCCTCTGAAAGGTGTGATTCGCTTTGACAAACCATTTTACAAATATTTGGCTGTACTCACTGGAGCTGGACTGATTGCAGTTGTAATGAATTGGGATACCTAG___TGGTAATGAATTGAGACACTTCTTAGCTAGCTGCAAACATATAGAAAATATCAATACCATTACAATCTACTGTTACATAAGTTTCTTATAAATGAAAATAGTTTCTTGGAGAGATTAAAAGTTTCTTCCACTGTCTCACAACGATGTACAGTGCAAGTTGTTCCGTTTACATGTTCTGTGGGAACACGTTACAAAGCTTTTTTATTTTATATACCTGGTCCAAGGAATTGTTGTCGATCATAATCTCAATTATTGTA

Fln Alignment:

Contig8543___RWNESFLLLGTQFAAGVFLGTAWMHFLSDSVETFEDLTDKTYPFAFMLCTAGYLVTMLADIIIVWVYEKQDQSSSIHSASPLQEPARNDEIGSGVHKYIDQTTLNFEDHPTANRGVHMMAHPTPNGGVPHMMTASLVKKTSVGDSLLLILALCFHSVFEGIAIGVSATKRDAWKALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYXXXXXXXXXXXXXXXXXXXXTTEGRVADWIYAISMGFACGVFVYVAINHLLMKGLIQNPLKGVIRFDKPFYKYLAVLTGAGLIAVVMNWD
A9NZA5______________RWNESFLLLGTQFAAGVFLGTAWMHFLSDSAETFADLTDKTYPFAFMLCTAGYLVTMLGDLIVAWVYQKQDGPNI--AAIPLQRKADIRSTESGAPTQTGEASLNCQTLQTP---------PHSNGESSMVKAASLVKKTSMGDSLLLILALCFHSVFEGIAIGVAATKADAWRALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPVGVAIGILIDATTQGHVADWIYAISMGFACGVFVYVAINHLLLKGLMYNPKNRAIPFDKPIFKYLAVLTGAGLIAVVMIWD

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
85	33		66		0.997452
260		22		77	0.999999
264	88		11		0.923564
268	88		11		0.923564
269		11		88	0.923564
270	11		88		0.923564
271	88			11	0.923564
272	88			11	0.923564
296		12		87	0.992554
311	28		71		1.0
336		16	83		0.994512
548		50		50	1.0
803	66		33		0.997452
885			33	66	1.0
920	70		30		1.0
1086			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain