SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8537

Length: 2314 nt

UniGene Fasta

>sp_v3.0_unigene8537
AAAGATGCCGACGGGTATGAAAGACGAAGAATGGAACCTTCTCGATAGAAAGGCACTCGGAACAATACGGCTGTGCCTTGCTGCGTCAGTCGCCTTCAACATTTCGAAGGAAACCACGACAGAGGGTTTGATGAAGGCGTTGTCGAAACTATATGAAAAACCCTCGGCCTCAAACAAGGTATTTCTTATGAAACGGTTATTTAATATGAAGATGTCAGAAGGTGGATATGTTGCAGACCATTTAAATGATTTTAATACAGTTACAAGTCAGTTAAGTTCTGTAGGGGTAAACTTTGATGATGAAATTAGAGCTCTGTTATTCTTGTGCTCATTACCAGAAAGTTGGAATGGTTTGGTAATGGCCATTAGTAACTCCGTTTCTGGATCTAGTACTTTAAAGTTTGATGATGTTGTCGGTGCTATCCTTAGCGAGGAAATGCGACGGAAAAGCTCCGGTGAGACATCGGGAAATGCTTTGAGTGCAGAGTCTAGAGGAAGAAAAATGGAAAGAGGAAAGAGCTCAGGATATCGCAGTAAATCAAGGAAAGGCAGATCCAAGTCCAGATCGGGGATAGTGTGCTGGAAATGTGGAAAGAAAGGACACCTAAAGAAAGACTGTAGATCTCAGAAGGGAAAAGAAGGAGATGCACAGCAAGAAAACAATCATGAAGCAAATGTGACAGGTGAGGTGTTACAAGATGCTTTGATTCTTTCTTTCGAAAATATTACTGATTCCTGGGTGGTAGATTCAGGGGCCTCATTCCATGCCACACCTGATAAGAAATACTTTCATGACTATGTTCAAGGAGATTTTGGACAAGTTCGTCTGGGTGATGATAAACCCTGTAAAATTGTTGGAATGGGTAAGGTTCTTGTAAAACAGCAGAATGGAAACCAATGGCTACTAAAGGAGGTAAGGCATGTTCCAGATCTAAAGAAAAATCTGATTTCAACAGGGCAGTTAGGCAGTGAAGGTTGTGTGACAACTTTCACAGATAAAGCTTGGAAGGTCACCAAAGGAGCCCTGGTAATAGCAAAAGGCGAAAAGGTTGGTACATTGTATTTATGCAATGGTATTTCTAACTCTGTTAATGCTTTGACTTCCAAAGGAGCAGATGCAGCATTATGGCATCATAGGCTCGGACACATGAGTGAAAAAGGGATGAAGATTCTTCACTCAAGGAATTTGTTGCCAGGTTTGAAGAATGTTGATTTGGACTTCTGTGAGAACTGCATTTATGGAAAACAGAAGAGAGTCAGATTTCTCAGAGTTGGGAAAGAAAAGAAGAGCGAAAAATTAGAGCTTGTGCATACAGACGTATGGGGACCTGCTCAGGTATCATCTCTCGGTGGCTCTCGTTATTATGTTACCTTTATTGATGATGCAACTAGAAAAACTTGGATTTATTGTATTAAGAATAAATCTGATGTATTTGATACTTTCAAGAAATGGAAAGCTTTGGTTGAGATTGAGACAGGAAAGAAATTGAAGTGTCTTAGATCAGACAATGGAGGTGAATATTGCAGCAAAGAGTTTGATAGGTACTGTTCAGAGCATGGAATTCGCAGAGAGAAGACAGTTCCAAGAACACCACAAGAAAATGGTGTGTCAGAAAGGATGAACAGAACAATCATGGAGCGTGCAAGGTGCATGAGATTGCATGCGGGATTGCCTTTACAGTTTTGGGCAGATGCTGTAGATACTGCTGTTTATCTAATAAACAGAGGGCCTTCAAGTTCCTTGGATGGTGGTGTTCCAGAGGAAGCATGGACAGGTAAAAAGGTAAACTACTCTATTTTAAAGCCTTTTGGTTGTGAGGCCTTTGTCCATATTGATAAAGAAAATAGAACAAAGCTTGAGGCAAAGTCAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGGTTATCGCTTATATGATTATGAAAATCACAAAATCATTAGGAGCAGAGATGTAATATTCAATGAAAAGGTCTTGTATAAGAATCAGTTGCAGGAAAAGAAACAAGAAAAAGAAAACAAGGAATATGCAGTTCTTGATGAAATCACTGAAAAAGTAAAGGTGCCTGAAAATAATAATAATCAATAACCACAACAACAACAAGCACCCCAAACACCTGAAAGTGGTGTTAGAAGATCTACCAGAATAAGTAGACCTCCTGAACGATACTCTCCTTCATTATACTATTTATTGTTGACTGATTTCGGTGAACTCGAATGTTATGAAGAAGCAATGCAGGTTGAAAGCAAGAAGAAGTGGGAGGTAGCCATGGAAGAAGAGATGGACTCCTAATGCATAACCAGACTT

Ace file of the UniGene sp_v3.0_unigene8537

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve multi-domain protein	-	-	2.0e-30	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	GSVIVT00009987001; GSVIVT00015182001; GSVIVT00019821001; GSVIVT00024858001; GSVIVT00034681001; GSVIVT00037749001; H0306F03.15; LOC_Os10g01450; LOC_Os11g15400; OSIGBa0105O19.1; OSJNBa0071K19.3; OSJNBa0093P23.9; OSJNBa0096E22.13; VITISV_000081; VITISV_00147

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 697 - 407

Fln protein: MPTGMKDEEWNLLDRKALGTIRLCLAASVAFNISKETTTEGLMKALSKLYEKPSASNKVFLMKRLFNMKMSEGGYVADHLNDFNTVTSQLSSVGVNFDDEIRALLFLCSLPESWNGLVMAISNSVSGSSTLKFDDVVGAILSEEMRRKSSGETSGNALSAESRGRKMERGKSSGYRSKSRKGRSKSRSGIVCWKCGKKGHLKKDCRSQKGKEGDAQQENNHEANVTGEVLQDALILSFENITDSWVVDSGASFHATPDKKYFHDYVQGDFGQVRLGDDKPCKIVGMGKVLVKQQNGNQWLLKEVRHVPDLKKNLISTGQLGSEGCVTTFTDKAWKVTKGALVIAKGEKVGTLYLCNGISNSVNALTSKGADAALWHHRLGHMSEKGMKILHSRNLLPGLKNVDLDFCENCIYGKQKRVRFLRVGKEKKSEKLELVHTDVWGPAQVSSLGGSRYYVTFIDDATRKTWIYCIKNKSDVFDTFKKWKALVEIETGKKLKCLRSDNGGEYCSKEFDRYCSEHGIRREKTVPRTPQENGVSERMNRTIMERARCMRLHAGLPLQFWADAVDTAVYLINRGPSSSLDGGVPEEAWTGKKVNYSILKPFGCEAFVHIDKENRTKLEAKSKKCTFIGYGVNDFGYRLYDYENHKIIRSRDVIFNEKVLYKNQLQEKKQEKENKEYAVLDEITEKVKVPENNNNQ*

Protein Length: 698

Fln nts: AAAG_-_ATGCCGACGGGTATGAAAGACGAAGAATGGAACCTTCTCGATAGAAAGGCACTCGGAACAATACGGCTGTGCCTTGCTGCGTCAGTCGCCTTCAACATTTCGAAGGAAACCACGACAGAGGGTTTGATGAAGGCGTTGTCGAAACTATATGAAAAACCCTCGGCCTCAAACAAGGTATTTCTTATGAAACGGTTATTTAATATGAAGATGTCAGAAGGTGGATATGTTGCAGACCATTTAAATGATTTTAATACAGTTACAAGTCAGTTAAGTTCTGTAGGGGTAAACTTTGATGATGAAATTAGAGCTCTGTTATTCTTGTGCTCATTACCAGAAAGTTGGAATGGTTTGGTAATGGCCATTAGTAACTCCGTTTCTGGATCTAGTACTTTAAAGTTTGATGATGTTGTCGGTGCTATCCTTAGCGAGGAAATGCGACGGAAAAGCTCCGGTGAGACATCGGGAAATGCTTTGAGTGCAGAGTCTAGAGGAAGAAAAATGGAAAGAGGAAAGAGCTCAGGATATCGCAGTAAATCAAGGAAAGGCAGATCCAAGTCCAGATCGGGGATAGTGTGCTGGAAATGTGGAAAGAAAGGACACCTAAAGAAAGACTGTAGATCTCAGAAGGGAAAAGAAGGAGATGCACAGCAAGAAAACAATCATGAAGCAAATGTGACAGGTGAGGTGTTACAAGATGCTTTGATTCTTTCTTTCGAAAATATTACTGATTCCTGGGTGGTAGATTCAGGGGCCTCATTCCATGCCACACCTGATAAGAAATACTTTCATGACTATGTTCAAGGAGATTTTGGACAAGTTCGTCTGGGTGATGATAAACCCTGTAAAATTGTTGGAATGGGTAAGGTTCTTGTAAAACAGCAGAATGGAAACCAATGGCTACTAAAGGAGGTAAGGCATGTTCCAGATCTAAAGAAAAATCTGATTTCAACAGGGCAGTTAGGCAGTGAAGGTTGTGTGACAACTTTCACAGATAAAGCTTGGAAGGTCACCAAAGGAGCCCTGGTAATAGCAAAAGGCGAAAAGGTTGGTACATTGTATTTATGCAATGGTATTTCTAACTCTGTTAATGCTTTGACTTCCAAAGGAGCAGATGCAGCATTATGGCATCATAGGCTCGGACACATGAGTGAAAAAGGGATGAAGATTCTTCACTCAAGGAATTTGTTGCCAGGTTTGAAGAATGTTGATTTGGACTTCTGTGAGAACTGCATTTATGGAAAACAGAAGAGAGTCAGATTTCTCAGAGTTGGGAAAGAAAAGAAGAGCGAAAAATTAGAGCTTGTGCATACAGACGTATGGGGACCTGCTCAGGTATCATCTCTCGGTGGCTCTCGTTATTATGTTACCTTTATTGATGATGCAACTAGAAAAACTTGGATTTATTGTATTAAGAATAAATCTGATGTATTTGATACTTTCAAGAAATGGAAAGCTTTGGTTGAGATTGAGACAGGAAAGAAATTGAAGTGTCTTAGATCAGACAATGGAGGTGAATATTGCAGCAAAGAGTTTGATAGGTACTGTTCAGAGCATGGAATTCGCAGAGAGAAGACAGTTCCAAGAACACCACAAGAAAATGGTGTGTCAGAAAGGATGAACAGAACAATCATGGAGCGTGCAAGGTGCATGAGATTGCATGCGGGATTGCCTTTACAGTTTTGGGCAGATGCTGTAGATACTGCTGTTTATCTAATAAACAGAGGGCCTTCAAGTTCCTTGGATGGTGGTGTTCCAGAGGAAGCATGGACAGGTAAAAAGGTAAACTACTCTATTTTAAAGCCTTTTGGTTGTGAGGCCTTTGTCCATATTGATAAAGAAAATAGAACAAAGCTTGAGGCAAAGTCAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGGTTATCGCTTATATGATTATGAAAATCACAAAATCATTAGGAGCAGAGATGTAATATTCAATGAAAAGGTCTTGTATAAGAATCAGTTGCAGGAAAAGAAACAAGAAAAAGAAAACAAGGAATATGCAGTTCTTGATGAAATCACTGAAAAAGTAAAGGTGCCTGAAAATAATAATAATCAATAACCACAACAACAACAAGCACCCCAAACACCTGAAAGTGGTGTTAGAAGATCTACCAGAATAAGTAGACCTCCTGAACGATACTCTCCTTCATTATACTATTTATTGTTGACTGATTTCGGTGAACTCGAATGTTATGAAGAAGCAATGCAGGTTGAAAGCAAGAAGAAGTGGGAGGTAGCCATGGAAGAAGAGATGGACTCCTAATGCATAACCAGACTT

Fln Alignment:

Contig8537___VPDLKKNLISTGQLGSEGC-VTTFTDKAW--KVTKGALVIAKGEKVGTLYLCNGISNSVNALTSKGADAA-LWHHRLGHMSEKGMKILHSRNLLPGLKNVDLD--FCENCIYGKQKRVRFLRVGKEKKSEKLELVHTDVWGPAQVSSLGGSRYYVTFIDDATRKTWIYCIKNKSDVFDTFKKWKALVEIETGKKLKCLRSDNGGEYCSKEFDRYCSEHGIRREKTVPRTPQENGVSERMNRTIMERARCMRLHAGLPLQFWADAVDTAVYLINRGPSSSLDGGVPEEAWTGKKVNYSILKPFGCEAFVHIDKENRTKLEAKSKKCTFIGYGVNDFGYRLYDYENHKIIRSRDVIFNEK
B8LKX7______________VPNLKSNLLSVNQIANQGYKVEFYKDKCLIKDINSNYKVVASGYVENGLYKFGRFTSNEKALVAEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKISQSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDER

SNPs (tot: 84)

Position	A %	C %	G %	T %	Probability
954		80		20	0.995493
957		80		20	0.995493
973		20		80	0.995493
990		80		20	0.995493
1004			80	20	0.995493
1028	20	80			0.995493
1035		25		75	0.996473
1037			75	25	0.996473
1039		75		25	0.996473
1046		66		33	0.997452
1057	33		66		0.997452
1065	25			75	0.996473
1069	20			80	0.995493
1073		80		20	0.995493
1090		80		20	0.995493
1117		80		20	0.995493
1138	83		16		0.994512
1161	80			20	0.995493
1162	80		20		0.995493
1163	60		20		0.99255
1179		85		14	0.993533
1187	33		66		1.0
1198	16	83			0.994512
1199	83		16		0.994512
1209	71		28		1.0
1223		57		42	1.0
1235		85		14	0.993533
1237	14		85		0.993533
1238		85		14	0.993533
1246	16		83		0.994512
1250	83		16		0.994512
1253	16		83		0.994512
1294	50		50		1.0
1295		50		50	1.0
1312		25		75	0.996473
1314		75		25	0.996473
1322		75		25	0.996473
1331	66		33		0.997452
1333		66		33	0.997452
1363	14	14	71		0.984337
1376		71		28	1.0
1412		20		80	0.995493
1429		80	20		0.995493
1448		85		14	0.993533
1466			85	14	0.993533
1472		14	85		0.993533
1480		83		16	0.994512
1482			66	33	1.0
1483			83	16	0.994512
1492	20			80	0.995493
1493		20	80		0.995493
1495	80			20	0.995493
1496			80	20	0.995493
1502		25		75	0.996473
1507		75		25	0.996473
1509			75	25	0.996473
1511		75	25		0.996473
1526	25			75	0.996473
1535	75	25			0.996473
1550		66		33	0.997452
1562	33			66	0.997452
1571		66	33		0.997452
1647			75	25	0.996473
1667		25		75	0.996473
1670	75		25		0.996473
1683		50		50	1.0
1685	33		66		0.997452
1693		75		25	0.996473
1699		75		25	0.996473
1701	25		75		0.996473
1711		75		25	0.996473
1733	25		75		0.996473
1734		75		25	0.996473
1746		25		75	0.996473
1793		33		66	1.0
1848	75			25	0.996473
1849	75		25		0.996473
1850			25	75	0.996473
1851	75		25		0.996473
1922		25		75	1.0
2003	16		83		0.999991
2008	75	25			0.996473
2158	75		25		0.996473
2211		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
2078	2089	AAT AAT AAT AAT	12
2098	2110	ACA ACA ACA ACA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain