SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8535

Length: 1693 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8535

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9SA95_RICCO	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Eukaryotic aspartyl protease family protein	-	-	1.421e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Nepenthesin.	EC:3.4.23.12	-	3.964e-07	-

Source	Gene names
Sma3	At2g03200; At3g18490; At5g33340; GSVIVT00007512001; GSVIVT00015377001; GSVIVT00017643001; GSVIVT00019250001; H0818E04.1; LOC_Os03g20230; LOC_Os03g20260; LOC_Os03g20270; LOC_Os03g20290; LOC_Os12g26470; NEP1; OJ1131_E05.101; OJ1131_E05.104; OSIGBa0152K17.10

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G03200.1	Eukaryotic aspartyl protease family protein chr2:966506-967891 REVERSE LENGTH=461	46%
RefSeq	Arabidopsis thaliana	NP_565298.2	aspartyl protease-like protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002300215.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg: your sequence is longer than subject: 498 - 460

Fln protein: MGGEWVICPSFFSQVLPHSFERLSVRSSTRDMAGLTARYLGACKNLLIPLMLLSIFRLMQCRNLNKFSVNEFVGESLPHRARLGLRIDLVHRDSLFSPISPGNISSIERLKRAIERSQDRLEKLQMSAGVKSVKLGGQVKDVQAPVSAGNGEFLLQLAIGKPSLSYSAILDTGSDLTWTQCMPCSDCYKQPTPIYDPSMSSTYGTVSCKSSMCLALPASACTSATCEYLYTYGDYSSTQGILSYETFTLSSQSVPHIAFGCGQDNEGSGFSQGGGLIGFGRGPLSFISQVGDSVGNKFSYCLMSVTDSASKTSSLFLGDTASLSGKTVGTTPLIQSSSQPTFYYLSLEGISVGGKLLSIPSGTFDLQSDGTGGLIIDSGTTITYLEQAGYDSLKKALISSISLPQADGTTIGLDLCYNAKSGHSTKFPTITFHFKGANYNLPKQNYIYVDSSGIICLAMLPSSGMSIFGNFQQQNYHILYDNGKNELSFTRTVCDSM*

Protein Length: 499

Fln nts: _-_ATGGGGGGAGAATGGGTGATCTGCCCTTCATTCTTTTCTCAGGTCCTCCCCCATTCCTTCGAGAGACTATCTGTACGAAGTAGTACACGAGATATGGCCGGACTGACAGCCAGATATCTTGGTGCCTGCAAAAATCTTCTTATCCCTCTGATGTTGCTTTCCATTTTTCGTTTAATGCAATGCAGAAATCTAAACAAGTTTTCTGTGAACGAATTTGTTGGTGAAAGTCTGCCTCACAGAGCCCGCCTGGGATTGAGAATCGATCTCGTGCATAGAGATTCACTGTTCTCTCCCATCTCTCCGGGCAATATTTCATCCATTGAGCGCTTAAAACGAGCAATCGAACGCAGTCAAGACAGGCTAGAAAAACTACAGATGTCTGCAGGTGTAAAATCTGTGAAATTGGGTGGTCAAGTGAAGGATGTGCAGGCTCCTGTAAGTGCAGGAAATGGAGAATTTCTCTTGCAGTTGGCAATTGGTAAGCCAAGTTTATCCTATTCTGCAATTTTGGATACCGGGAGTGACCTGACATGGACACAGTGCATGCCTTGCAGTGATTGTTATAAACAGCCAACTCCAATCTATGATCCTTCCATGTCCTCCACTTACGGTACTGTCTCCTGCAAAAGCTCTATGTGCTTGGCTCTTCCCGCCTCGGCTTGCACTAGTGCAACGTGCGAGTACTTGTACACTTATGGTGATTACTCCTCAACGCAGGGAATCCTTTCATATGAGACCTTTACCCTTTCTTCTCAGTCAGTTCCCCATATTGCGTTTGGTTGCGGGCAGGATAATGAAGGAAGTGGGTTCAGCCAAGGAGGCGGATTGATAGGGTTCGGACGCGGCCCATTATCCTTCATCTCACAGGTTGGCGACTCGGTGGGTAATAAGTTTTCTTACTGCCTGATGTCTGTTACTGATTCTGCTTCCAAAACCAGTTCTTTGTTTTTAGGTGACACTGCTAGCCTCAGTGGCAAGACTGTGGGTACCACTCCTCTTATACAGAGCAGCTCCCAGCCAACTTTCTATTATCTTTCTTTGGAAGGAATCAGCGTTGGTGGTAAATTATTGAGTATCCCCAGTGGCACATTTGATCTTCAATCTGATGGCACTGGCGGACTTATCATCGACTCTGGAACAACCATCACGTATCTGGAACAGGCTGGGTATGATTCTCTGAAGAAAGCCCTGATCTCATCGATTAGTCTCCCGCAGGCGGATGGCACTACCATTGGACTGGACCTCTGCTATAACGCAAAATCTGGCCATTCAACTAAATTTCCGACCATAACTTTCCACTTCAAAGGAGCAAATTACAACTTGCCCAAGCAAAATTACATATATGTGGATAGCAGTGGCATTATCTGCCTTGCAATGTTACCGAGTAGTGGGATGTCCATATTTGGTAATTTTCAACAGCAGAACTACCATATACTTTACGACAACGGAAAAAACGAGCTGTCCTTCACGCGTACAGTTTGTGATTCGATGTAA___GCATATGCCTCTTTGATTTCTCCTCCAGCTTATATTCTCTGTTATGATTTCTTTTCATTATCCAGTGTGTTCCTGCTACCGTTGGACACAACCATTGTGATTTATATATGTATTCATAACCAGCATTAGTAGATTGTATGTGCAATAGAGAAGATTGGTTCTCTTATTCGATTTATGGAACGAAGGATTTATCTGTATC

Fln Alignment:

Contig8535___MAGLTARYLGACKNLLIPL-MLLSIFRLMQCRNLNKFSVNEFVGESLPHRARLGLRIDLVHRDSLFSPISPGNISSIERLKRAIERSQDRLEKLQMSAGVKSVKLGGQVKDVQAPVSAGNGEFLLQLAIGKPSLSYSAILDTGSDLTWTQCMPCSDCYKQPTPIYDPSMSSTYGTVSCKSSMCLALPASACTSATCEYLYTYGDYSSTQGILSYETFTLSSQSVPHIAFGCGQDNEXXXXXXXXXXXXXXXXPLSFISQVGDSVGNKFSYCLMSVTDSASKTSSLFLGDTASLSGKTVGTTPLIQSSSQPTFYYLSLEGISVGGKLLSIPSGTFDLQSDGTGGLIIDSGTTITYLEQAGYDXXXXXXXXXXXXPQADGTTIGLDLCYNAKSGHSTK-FPTITFHFKGANYNLPKQNYIYVDSSGIICLAMLPSSGMSIFGNFQQQNYHILYDNGKNELSFTRTVCDSM
A9NXW9______________MAGQSARSFGACKWLLITMTLLLSVFSLIQCRHVSNFPVHEVVGVRLQEEPLIGLRIDLVRTDSPLSPFSPGNISSTERFKRAIKRSQDRLEKLQMSVD--------EVKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMCQALPMYSCSGANCEYLYSYGDQSSTQGILSYESFTLTSQSLPHIAFGCGQENEGGGFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNAKTVSSTPLVQSRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHFEGADFNLPKENYIYTDSSGIACLAMLPSNGMSIFGNIQQQNYQILYDNERNVLSFAPTVCDTL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
201	20			80	0.995493
203			20	80	0.995493
204		80	20		0.995493
205			20	80	0.995493
230	12	87			0.992554
279	87		12		0.992554
545	90		10		0.90298
621		75	25		0.996473
622		75	25		0.996473
623			25	75	0.996473
625	25	75			0.996473
626	75			25	0.996473
628	75			25	0.996473
631	25	75			0.996473
633		75		25	0.996473
634		25		75	0.996473
639	25		75		0.996473
640		75		25	0.996473
643	25		75		0.996473
644	25		75		0.996473
645	25	75			0.996473
646		50		50	1.0
759	33	66			0.997452
767		84		15	0.999991
981		87		12	0.992554
1598		10		90	0.90298
1600	10			90	0.90298
1602	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain