SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8532

Length: 2185 nt

UniGene Fasta

>sp_v3.0_unigene8532
CATGGGGAAGGTTAAGTTGTATAAATCAGAGGCTGATTATGCGCTTTGCATATCAATAAGCCCATCGTGGTTGAAACGAGGTCAAGGTATCCAGTAATTTAATAGGATCACATAAAGCTTGGCAAGTGTTTCATAGGCCTTATTAAAGTGCCATGACGATCAAGCTAGATCTGGAGCAGGGAGAACTGAGTGAGCAGGCAGATATCAGCCAGCCATTTCTGACAGCTGAAGAGAATACTGAAAGCAAGAAAAGTTTCAGCGACAGGAGAAGCAATGAAGGTTCGACTGCAACAGTGTTCCTCAGCACTTTCACTGTGGTGCTGGGCTCTCTGGAGTTTGGATACTGTGTGGGATTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTCGGCCTGACTACGTCTCAGTTTTCTACCTTTAGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGAATGCATGGCTACTATACATTGGAAGACTGCTTACAGGATATGGAGCTGGTCTTACTTCCTATACGGTTCCTGTATACATAGCTGAAATAACTCCCAAGAACTTAAGGGGAGGGCTTACAACAACAAATCAATTGTCCATAACCATCGGTATTTTAATAGCATATTTGCTTGGGATGCTAGTCGAATGGCGCCTTCTTGCTATTATAGGAATCATCCCCTGTATTCTTTTGGTATCAGGACTCTTCTTTATTCCAGAGTCCCCTAGGTGGTTGGCAAAAGTTGGCCATGACAAAGAATTTGAAGAAGCATTGCAAGCCCTTCGTGGAAAGGACTGTGATGTTTCTGATGAAGCAGCTGAAATAAGGGTGCTTACTGTTACTTTAGGTTTTCTGCCTATAAATTAAAATTTGTTAAATAAGTAAAAGAAATTGTACAAAAATATACTAACCTTAAATGGTTGCAGCTGATCGTGGAGGAATCCTAAGGAATATGTAGAGGAGCTGGGAAACCTTCCTAGGGCCAAAATATTGGACTTGTTTCGGTTGAAGTATATGCATTCTGTGGTTGTTGGAGTTGGCTTGATGGTATTCCAACAATTTGGAGGAATCAATGCTGTTATGTTCTATGCCAGTGAAATTTTTAAAGATGCTGGCTTTTCTTCCAGCAACATGGCATCAGTGGCTGTGGCTGCCCTACAGGTGCCAATGACAGCAATAGGTGCACTGTTAATGGACAAATCCGGACGGCGACCTCTTTTAATGGTCTCCGCTGGAGGAATGAGCATAGGGTGCTCCCTAGTTGGAGTGTCATTCTATTTACAGAATCACGAAAGTGATACTCATCTTTCGCTCGTGGTGACCATATTGGCTCTAGGTGGTCTCTTGGGCTATATTGCAGCATTCTCTTTGGGCATGGGTGGAATTCCATGGATTATAATGTCTGAGATATTTCCTATAAATATGAAAGGCATTGCTGGCAGTTTGGTGACACTTGTTTGTTGGTTTGGGTCTTGGGTTATCACAGTCACCTTCAATTTTCTTCTTGCATGGAGTACAGAAGGTACATTCTTTCTCTTCGCTGGGATAAGTGCATCTGCAGTGTTTTTTGTTGCATATCTCGTGCCAGAGACCAAGGGGCAAACTCTGGAAGAAATACAATCATCATTTGAATCATTTTTTACAAGAAGAACGTTGAACGCCAACTAAGTGTTTTAATAAAAATCTGTATTCTGTCTATTTTAGTAAAAGAGCTAAAGCAGTAGGAAATCCTATTCTTTGTTATTGTGAGAGCATTATGCTTGAAATTAAGCTTTAAAAACGAAGATGTTGTTTTCGAACTTCCAAGTTTCATCCAGCAGACAAGAATTGAGAGAGATCAGTTTATGTTAGTGAGAATATATGCTTCGTGTGATCAAATTTAACGAGTGTAACATGTTTCTCTGAGAAATAAAAGGATCCATCTTATTCAAGAGGATTACAATTCAATATAGATAAACACCATATCTTTTACTCTAATTTTGGGGTCCCGAAAAGAAAGCATAGCTCATTCAATATATCTGACATTTATAAAGCTTGTGATGAGTTTGCATTCTGATCCAGGTGGATGTTGGTGGCCACCTACTTAT

Ace file of the UniGene sp_v3.0_unigene8532

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7T6L7_VITVI	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Chromosome chr14 scaffold_164, whole genome shotgun sequence	-	-	1.717e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.959e-12	-

Source	Gene names
Sma3	10A19I.3; AT1G08890; AT1G08900; AT3G05165; At1g08890; At1g08900; At1g08920; At1g08930; At1g19450; At1g54730; At1g75220; At2g48020; At3g05150; At3g05160; At3g05165; At3g05400; At5g18840; At5g27350; At5g27360; ERD6; F17K4.90; F18O14.22; F21A20.60; F21A20.70

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G18840.1	Major facilitator superfamily protein chr5:6282954-6286399 FORWARD LENGTH=482	50%
RefSeq	Arabidopsis thaliana	NP_568367.1	sugar transporter ERD6-like 16 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002319570.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: your sequence is longer than subject: 538 - 501

Fln protein: MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDLGLTTSQFSTFSSLLTIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIRVLTVTLGFLPIN*NLLNK*KKLYKNILTLNGCS*SWRNPKEYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFSSSNMASVAVAALQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTILALGGLLGYIAAFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVITVTFNFLLAWSTEGTFFLFAGISASAVFFVAYLVPETKGQTLEEIQSSFESFFTRRTLNAN*

Protein Length: 539

Fln nts: CATGGGGAAGGTTAAGTTGTATAAATCAGAGGCTGATTATGCGCTTTGCATATCAATAAGCCCATCGTGGTTGAAACGAGGTCAAGGTATCCAGTAATTTAATAGGATCACATAAAGCTTGGCAAGTGTTTCATAGGCCTTATTAAAGTGCC_-_ATGACGATCAAGCTAGATCTGGAGCAGGGAGAACTGAGTGAGCAGGCAGATATCAGCCAGCCATTTCTGACAGCTGAAGAGAATACTGAAAGCAAGAAAAGTTTCAGCGACAGGAGAAGCAATGAAGGTTCGACTGCAACAGTGTTCCTCAGCACTTTCACTGTGGTGCTGGGCTCTCTGGAGTTTGGATACTGTGTGGGATTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTCGGCCTGACTACGTCTCAGTTTTCTACCTTTAGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGAATGCATGGCTACTATACATTGGAAGACTGCTTACAGGATATGGAGCTGGTCTTACTTCCTATACGGTTCCTGTATACATAGCTGAAATAACTCCCAAGAACTTAAGGGGAGGGCTTACAACAACAAATCAATTGTCCATAACCATCGGTATTTTAATAGCATATTTGCTTGGGATGCTAGTCGAATGGCGCCTTCTTGCTATTATAGGAATCATCCCCTGTATTCTTTTGGTATCAGGACTCTTCTTTATTCCAGAGTCCCCTAGGTGGTTGGCAAAAGTTGGCCATGACAAAGAATTTGAAGAAGCATTGCAAGCCCTTCGTGGAAAGGACTGTGATGTTTCTGATGAAGCAGCTGAAATAAGGGTGCTTACTGTTACTTTAGGTTTTCTGCCTATAAATTAAAATTTGTTAAATAAGTAAAAGAAATTGTACAAAAATATACTAACCTTAAATGGTTGCAGCTGATCGTGGAGGAATCCTAAGGAATATGTAGAGGAGCTGGGAAACCTTCCTAGGGCCAAAATATTGGACTTGTTTCGGTTGAAGTATATGCATTCTGTGGTTGTTGGAGTTGGCTTGATGGTATTCCAACAATTTGGAGGAATCAATGCTGTTATGTTCTATGCCAGTGAAATTTTTAAAGATGCTGGCTTTTCTTCCAGCAACATGGCATCAGTGGCTGTGGCTGCCCTACAGGTGCCAATGACAGCAATAGGTGCACTGTTAATGGACAAATCCGGACGGCGACCTCTTTTAATGGTCTCCGCTGGAGGAATGAGCATAGGGTGCTCCCTAGTTGGAGTGTCATTCTATTTACAGAATCACGAAAGTGATACTCATCTTTCGCTCGTGGTGACCATATTGGCTCTAGGTGGTCTCTTGGGCTATATTGCAGCATTCTCTTTGGGCATGGGTGGAATTCCATGGATTATAATGTCTGAGATATTTCCTATAAATATGAAAGGCATTGCTGGCAGTTTGGTGACACTTGTTTGTTGGTTTGGGTCTTGGGTTATCACAGTCACCTTCAATTTTCTTCTTGCATGGAGTACAGAAGGTACATTCTTTCTCTTCGCTGGGATAAGTGCATCTGCAGTGTTTTTTGTTGCATATCTCGTGCCAGAGACCAAGGGGCAAACTCTGGAAGAAATACAATCATCATTTGAATCATTTTTTACAAGAAGAACGTTGAACGCCAACTAA___GTGTTTTAATAAAAATCTGTATTCTGTCTATTTTAGTAAAAGAGCTAAAGCAGTAGGAAATCCTATTCTTTGTTATTGTGAGAGCATTATGCTTGAAATTAAGCTTTAAAAACGAAGATGTTGTTTTCGAACTTCCAAGTTTCATCCAGCAGACAAGAATTGAGAGAGATCAGTTTATGTTAGTGAGAATATATGCTTCGTGTGATCAAATTTAACGAGTGTAACATGTTTCTCTGAGAAATAAAAGGATCCATCTTATTCAAGAGGATTACAATTCAATATAGATAAACACCATATCTTTTACTCTAATTTTGGGGTCCCGAAAAGAAAGCATAGCTCATTCAATATATCTGACATTTATAAAGCTTGTGATGAGTTTGCATTCTGATCCAGGTGGATGTTGGTGGCCACCTACTTAT

Fln Alignment:

Contig8532___MTIKLDLEQGELSEQADISQPFLTAEENTESKKSFSDRRSNEGSTATVFLSTFTVVLGSLEFGYCVGFSSPVQSAMIKDXXXXXXXXXXXXXXXXIGAMVGAILSGRTADFLGRKGALRVSSACYVVGWLMISLLKNAWLLYIGRLLTGYGAGLTSYTVPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVEWRLLAIIGIIPCILLVSGLFFIPESPRWLAKVGHDKEFEEALQALRGKDCDVSDEAAEIRVLTVTLGFLPIXXXXXXXXXXXXXXXXXXXGCS*SWRNPKEYVEELGNLPRAKILDLFRLKYMHSVVVGVGLMVFQQFGGINAVMFYASEIFKDAGFXXXXXXXXXXXXLQVPMTAIGALLMDKSGRRPLLMVSAGGMSIGCSLVGVSFYLQNHESDTHLSLVVTXXXXXXXXXXXXXFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVCWFGSWVITVTFNFLLAWSTEGTFFLFAGISASAVFFVAYLVPETKGQTLEEIQSSFESFFTRRTLNAN
D5A8F2______________MTIKIDLEIGELSEQADISQPFLPAEEKTESKKSFSERRSNGGSIATVVLSTFVVVLGSLEFGYSVGFSSPVQSAMMEDLGLTMSQYSTFGSLLTIGAMVGAILSGRIADFLGRKGALRVSSASYVIGWLIISLLKDAWLLDIGRLFIGYGVGLTSYTIPVYIAEITPKNLRGGLTTTNQLSITIGILIAYLLGMLVRWRLLAIIGIIPCFLLVLGLFFIPESPRWLAKVGHDKEFDEALQALLGKDCDVSVEAAEIR----------------------------------------EYVEELENLPRAKILDLFRPKYMHSVIVGVGLMVFQQLGGINAVMFYASEIFKDAGIASNHAASVAVAALQVPMTAFGALLMDRSGRRPLLMVSAGGMSLGCFLVGLSFYIQGHANDTHLAALVTILALGGLLGYIATFSLGMGGIPWIIMSEIFPINMKGIAGSLVTLVAWFGSWVITVTFNYLLAWSAAGSFFIFAGVSASAVVFVAYLLPETKGQTLEEIQSSFESFFTKRTLKAN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
109	25		75		0.996473
112		75	25		0.996473
113	75			25	0.996473
142	20	80			0.995493
144			20	80	0.995493
145	80		20		0.995493
146			20	80	0.995493
147	20			80	0.995493
380		87		12	0.992554
781	10	90			0.90298
783	10			90	0.90298
784			90	10	0.90298
999	66		33		0.997452
1052	83			16	0.994512
1057			83	16	0.994512
1180	16		83		0.994512
1182			16	83	0.994512
1183	83		16		0.994512
1184			16	83	0.994512
1245		85	14		0.993533
1666		4		75	1.0
1738	5			73	1.0
1851	80		19		1.0
2051	63	9		27	1.0
2054	88		11		0.923564
2055	11		88		0.923564
2063		60	40		1.0
2078		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain