SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8529

Length: 1333 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8529 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative aspartate--tRNA ligase [Arabidopsis thaliana] emb\|CAB80093.1\| putative aspartate--tRNA ligase [Arabidopsis thaliana]	-	-	0.0	73%
FL-Next	sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%
Sma3	Putative aspartate--tRNA ligase	-	-	1.563e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate--tRNA ligase.	EC:6.1.1.12	-	3.28e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		3.28e-07	%

Source	Gene names
Sma3	ASPS1; AT4g33760; At4g33760/T16L1_250; CHLREDRAFT_196583; GSVIVT00038605001; MICPUCDRAFT_33627; MICPUN_84428; OSTLU_16561; Os01g0153400; OsI_00447; OsJ_00416; Ot08g03540; P0030H07.25; PHYPADRAFT_104163; POPTRDRAFT_557552; POPTRDRAFT_798090; POPTRDRAFT_950

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartate-tRNA ligase activity	GO:0004815	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	aspartyl-tRNA aminoacylation	GO:0006422	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	IPR002312	-	-
Sma3	GAD domain	IPR004115	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial-type	IPR004524	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-
Sma3		IPR018153	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33760.1	tRNA synthetase class II (D, K and N) family protein chr4:16189285-16193260 REVERSE LENGTH=664	73%
RefSeq	Arabidopsis thaliana	NP_195102.2	aspartyl-tRNA synthetase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002313196.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O48593

Fln msg: your sequence is shorter than subject: 220 - 567

Fln protein: ALTSTLDNGKREDLLNQCSAKPGDLIIFAVGQPSAVNKTLGRLRLYFACDLGVIDNSTRSILWVTDFPMFEWNESELRLEPLHHPFTAPNPDDLSDLSTARALAYDMVYNGIEIGGGSLRIYKREIQEKVLETIGITPVQAEEKFGYLLEALDFGAPPHGGIAYGLDRLVMLLAGESSIRDVIAFPKTTTAQCSLTKTPSRVDPKQLRELSYSIEKFTD*

Protein Length: 221

Fln nts: GCTTTGACATCAACTTTGGATAATGGAAAAAGAGAGGACTTGCTTAATCAGTGTTCTGCCAAGCCTGGAGATCTGATTATTTTTGCTGTAGGCCAGCCTTCAGCTGTGAACAAAACTCTTGGTCGGCTACGGTTATACTTTGCTTGTGATCTGGGAGTGATTGACAATTCTACGCGTTCAATTTTATGGGTGACGGACTTTCCTATGTTTGAGTGGAATGAGTCTGAGCTGAGACTTGAGCCTCTCCACCATCCTTTCACGGCCCCAAACCCAGATGATTTGTCTGATCTTTCCACAGCTCGAGCTTTGGCATATGACATGGTGTACAATGGAATTGAGATTGGAGGAGGAAGCTTGAGAATCTACAAACGTGAGATCCAAGAGAAGGTGCTGGAAACAATTGGGATTACACCTGTTCAGGCAGAAGAAAAGTTTGGCTATTTACTTGAAGCTCTTGATTTTGGTGCTCCACCTCACGGAGGTATTGCCTATGGGCTTGATCGGTTGGTTATGCTTTTGGCTGGTGAAAGCTCTATCAGAGATGTTATTGCATTTCCAAAGACAACTACAGCACAATGTTCTTTGACAAAAACACCTTCAAGAGTTGATCCAAAGCAGCTTCGAGAACTTTCCTATTCCATTGAGAAGTTTACTGATTAG___TGAAGCAGGTTAAGCTGGTTGCATAGTTTACAGTTTTTGTTCTTAACGGACAGATGGGTATTTTTGGCATATGAGTGTGCTGGGCCTGGTAGCAACAGTCCACACATCCACGCATAATGTTTGCCAGTGAGATTTATCTTACAATGGCAGTGCATATTTTGTTGGTTAGTTTTGGCTTCTACTCTGATTAATTGAAGAAAGGAAGCTCAAATCAGATCCTGATGTACCGTTACAAGCAATTTTGGAAGGTATCAATGTCATGAATATGTTAGCAGTTGGAACAACTTATGCCGTTCTAAACTCATATTTCTAGAACAAATGAGGTATATAAAATGCTCTCTGCTATTGTGAGAAAGGATTACTAAAATTAAATTTCTGATATGTGCATTTGAACACAGAAATTCCAAAATTTATGTATTCAGATGCTCTTTTAGCATGGGAAACAGGAAGGTGGCCATTTTTATTGTTCAGCCAAAAGTTACAGAAGCTGTAAAGCTATATTTTTTAGGCATGACATTTGCCTTCACCAGATTGTGTGATGTGCTTTCTTTATTCCTTATGTTTTGTATCTGCCAAGGAAATTTTACTATAACTTTTGTAGGGCGGATTACATTTTCAGTTATGGAGCATCGAGGACATTTGTGGCCATTGTATGAAGACTTTATTCAAGTAC

Fln Alignment:

Contig8529___AYDMVYNGI-EIGGGSLRIYKREIQEKVLETIGITPVQAEEKFGYLLEALDFGAPPHGGIAYGLDRLVMLLAGESSIRDVIAFPKT
O48593______________AMDMLVPRIGELIGGSQREERLEVLEARLDELKLN----KESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIPFPRT

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
481		10		90	0.90298
482		10		90	0.90298
485	90			10	0.90298
502		77		22	0.999999
503		77	22		0.999999
505	77	11	11		0.968132
506	88			11	0.923564
507	88	11			0.923564
509	11			77	0.968132
511	77		22		0.999999
512		88	11		0.923564
513		88		11	0.923564
514	88	11			0.923564
516		88	11		0.923564
517	77		22		0.999999
518	88			11	0.923564
519	77	22			0.999999
520	88		11		0.923564
521		12		87	0.992554
523		12		87	0.992554
556	83	16			0.994512
557	83	16			0.994512
1064		50		50	1.0
1110			75	25	0.996473
1111		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain