SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8505

Length: 3027 nt

UniGene Fasta

>sp_v3.0_unigene8505
ATGATAATTCCGCCGGTCCCAACGGACGGGAATCGATATGGCGGTGGGCTGTTCCAAATGTAACCCTAATGCATATAAATTTAAATGCAAATGCACCTGAAATGAAATGTAAAAACTCGCTTATTACGACGTCACACACCTTAGATGGCACCAAGGGTTTCGGCTCTTACAGAGTAAGATCTGCAGCCTACCGTCGGGACTGCTTGAGGACTCACTAAGCTACAGGACTGTCTGTTTGTTGTATTGTTTTTGGTTGCAATGGCGAGTGGTGGCAAACGTTCACGTTCTAACGATGCTGATCGAAATAGTGAAAGAAAGCGACGGAATCCTGGTGGTCAAAGAGAGACGTTGCCTGGTTTAGATGACACAGTCTACCGCTTGCTATGCCCCGGAGACAAAATTGGAGGTGTCATAGGAAAGGGCGGTAGTATTATCAAGTCCCTGAGGCAAAACACACGTGCCAAGATTAAGGTTGCGGATGGCATTCCAGGGGTTGACGAGAGAGTTATCATCATTTTCAGTTCACCAAAAGATCGGAAGGCGGACCGGGACGATGAAGATGATGATGCTGTATTAGTGGATGGTAAGAGTCCACTTTGTGCTGCTCAAGATGCGCTGTTTAGGGTGTTTGGAAGAATTGTTGAGGAGGGAAGAGGATCTGATGATGAAGACGACGAGTCTGCTAAACAAGCAACTGTTCGCTTATTAGTTCCGAACAATCAAATTGGTTGTCTGCTTGGGAGAGGCGGAAAGGTTATTGAGAAAATGAGAACTGATACTGGTGCACAGATTAAAATTCTACCAAAGGAACAGCTGCCCTCTTGCGCCATGGCTACTGATGAGCTTGTTCAGATTGCGGGGGCCTATTCAGTTGTGAAGAAAGCTTTATATGAGGTTTCGTCTAGGCTTCATGAAAATCCTCCCAAAGAGCGACTTCAATTAAACAACCCTGTTACTGCTTTCGGCCATAACCCTTTTCTTTCTTCGGCTGGACAATTGTTTTCCCCGGGGAGCATGTTGTCCCAGGGTACTGCTCCTATTGTTGGCATTGCACCACATATGCCTGCAGTTGGTGGATATAGGAGTGAAGCTAGTGCTGCGTGGCCTCTCAGTTCATCTGGATATCCGGTACTTACTGGTTTGGGTGGTCCTCATAGAAGAGATGATGCTTCTGCGGAAGAGTTTGTATTTCAATTGTTGTGCCGGAATGATAAAATTGGTGGCGTAATAGGAAAAGGTGGTGGTGTGATCAACCAAATTAGACAGGAGACGGGAGCAAATATTAAGGTCCTAGAGCAAGTACCTGATTGTGATGAGCGTGTGATTGTAGTGTCCTCTAAAGAGTATGCCGATGATCGCGTTTCCCCTACTATGGAGGCTGTACTTCAATTGCAATTCAAGGCTAGTGAAAAATCGACGGACGAAGGTAAAGAAGGTGTCATCACTACAAGGTTTCTTGTGCCGTCCATAAATATAGGTTGCCTTTTAGGGAAAGGTGGTAGCATTATTTCCGAAATGCGAAAGAGGACTCGAGCCAACATTCGCATAATGTCAAAAGATAATCTTCCCAAATGTGCTAGCGAAGATGAAGAACTTGTACAGGTTATTGGTGAGGTTGATGTTGCTAGAGATGCTCTAATTCAAATTGCAACAAGGCTCAGGGCAAATGTATTTAAAGACAGTGATGGTGGGGCAACTGCTGGGTCTGTGGTTCCTCCATCTCTCTCTTTATATGGTAGGGGGATTGCTGACTCAGGTTTTGGACGTGGCGATGAGTTGGGATCAACTGGTAGAATGTATTCTCTGTCAAGTTTAGGTTTAGAAGGGACTGGTGCGGGGAGATATTCATCTTATGGTAGCTTGGGAAGCACGAATGGTGCTGGTGGGTATGGATCTCTCTCTAGCTTTTCAACCAGTCGATCTGCAGCTGGGGGTTTACCTGCTGGAGTACCGAAATCTGGATCTACCGTTGAGGTTACAATACCAAATAAATCAGTTGGTTCTATTCTCGGGAGAGGTGGATCAAATATATCTCAAATTCGTGAGATTTCAGGAGCAAAAGTGAAGTTGCATGAATCAAAACCTGGAGGTACAGACCGTGTTGTTGAGATCTCCGGGACACCAGAACAGACACATGCAGCCCAAAGCCTGCTTCAGGCATTTGCAATGTCTGGTCAAAATACACGAACAGCACGTGCTTTATAGAACAGATAGTCTCACATATCAGATGGGCCATTTGTTCATTTGCTTTCTGAACACACGACAATAGTACATCCATGAGCAGGTAATCCTAAAATATGATCATTATTTATTTGCATTAGCATTTCAATACAGAAAGGATCTACATCAATTCAAAAATATTTTATGCATTCATTTGTTTGTAAATATTTTCCAAGCTTGCTTTTGCATTCGTGTAAGTCATACCTTGTATTAGTGTGAACCATATCCAACATGCAGATTTTTTTCTTCGAATATTGACGTAATAGGTGTTTTGACCTGACCTTCACATGAAGGTTCGAAGAAGGAAATCTGAATGGTGGGTATGTTTCGCTTAATGTGTCATTCCTTCATTCTGTTTTTGTATTACCTTCATTTCATTTGCTAAGATGGTTCTATTTTTGTCTGATTTTTTATTCTCATGAATTCGCTTCAATCTCTATTAACAATAGGGAAGAAGACCAAGTAATTGGTCCAGATTTAATTGGTTTTGAGTTTTTTAGTTTTTCGAGTATGCTTCGATGTTATTAACCTTGTATTGCAGAATCGTAGAATTCATCTTAAACTTTGAAGTATTGAACTCTCTCGTTTCAAAGATTTAATAAGAACTGTTCTTATTTCTACAAAATGTACTTGCATTGCACAATAGTAGCTGTCCCCACAGAATATTTTCAATATTATTTGAAGATGTACTACTCTTATCAATAAATGTATCAAAGGATCGTTGTTCATTATCTTTTTAATGTGTGGTGCTTTTGCCGGGAATTATTTGTGATGTGGTATTTTCCTTTGACACTCTAATATACTGAT

Ace file of the UniGene sp_v3.0_unigene8505

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding KH domain-containing protein [Arabidopsis thaliana] ref\|NP_197031.3\| RNA-binding KH domain-containing protein [Arabidopsis thaliana] dbj\|BAF00580.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAF01176.1\| hypothetical protein [Arabidopsis	-	-	0.0	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Poly(RC)-binding protein, putative	-	-	2.287e-07	-

Source	Gene names
Sma3	AT1G14170; At1g14170; At5g15270; F7A19.25; F8M21_160; GSVIVT00020994001; GSVIVT00036937001; GSVIVT00038217001; LOC_Os03g25970; LOC_Os10g35220; OSJNBa0017E08.17; OSJNBa0041P03.3; OSJNBb0048D20.13; Os03g0376800; Os10g0495000; Os10g0497500; OsI_11787; OsI_11

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABA1

Fln msg: your sequence is longer than subject: 649 - 340

Fln protein: MASGGKRSRSNDADRNSERKRRNPGGQRETLPGLDDTVYRLLCPGDKIGGVIGKGGSIIKSLRQNTRAKIKVADGIPGVDERVIIIFSSPKDRKADRDDEDDDAVLVDGKSPLCAAQDALFRVFGRIVEEGRGSDDEDDESAKQATVRLLVPNNQIGCLLGRGGKVIEKMRTDTGAQIKILPKEQLPSCAMATDELVQIAGAYSVVKKALYEVSSRLHENPPKERLQLNNPVTAFGHNPFLSSAGQLFSPGSMLSQGTAPIVGIAPHMPAVGGYRSEASAAWPLSSSGYPVLTGLGGPHRRDDASAEEFVFQLLCRNDKIGGVIGKGGGVINQIRQETGANIKVLEQVPDCDERVIVVSSKEYADDRVSPTMEAVLQLQFKASEKSTDEGKEGVITTRFLVPSINIGCLLGKGGSIISEMRKRTRANIRIMSKDNLPKCASEDEELVQVIGEVDVARDALIQIATRLRANVFKDSDGGATAGSVVPPSLSLYGRGIADSGFGRGDELGSTGRMYSLSSLGLEGTGAGRYSSYGSLGSTNGAGGYGSLSSFSTSRSAAGGLPAGVPKSGSTVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEISGTPEQTHAAQSLLQAFAMSGQNTRTARAL*

Protein Length: 650

Fln nts: ATGATAATTCCGCCGGTCCCAACGGACGGGAATCGATATGGCGGTGGGCTGTTCCAAATGTAACCCTAATGCATATAAATTTAAATGCAAATGCACCTGAAATGAAATGTAAAAACTCGCTTATTACGACGTCACACACCTTAGATGGCACCAAGGGTTTCGGCTCTTACAGAGTAAGATCTGCAGCCTACCGTCGGGACTGCTTGAGGACTCACTAAGCTACAGGACTGTCTGTTTGTTGTATTGTTTTTGGTTGCA_-_ATGGCGAGTGGTGGCAAACGTTCACGTTCTAACGATGCTGATCGAAATAGTGAAAGAAAGCGACGGAATCCTGGTGGTCAAAGAGAGACGTTGCCTGGTTTAGATGACACAGTCTACCGCTTGCTATGCCCCGGAGACAAAATTGGAGGTGTCATAGGAAAGGGCGGTAGTATTATCAAGTCCCTGAGGCAAAACACACGTGCCAAGATTAAGGTTGCGGATGGCATTCCAGGGGTTGACGAGAGAGTTATCATCATTTTCAGTTCACCAAAAGATCGGAAGGCGGACCGGGACGATGAAGATGATGATGCTGTATTAGTGGATGGTAAGAGTCCACTTTGTGCTGCTCAAGATGCGCTGTTTAGGGTGTTTGGAAGAATTGTTGAGGAGGGAAGAGGATCTGATGATGAAGACGACGAGTCTGCTAAACAAGCAACTGTTCGCTTATTAGTTCCGAACAATCAAATTGGTTGTCTGCTTGGGAGAGGCGGAAAGGTTATTGAGAAAATGAGAACTGATACTGGTGCACAGATTAAAATTCTACCAAAGGAACAGCTGCCCTCTTGCGCCATGGCTACTGATGAGCTTGTTCAGATTGCGGGGGCCTATTCAGTTGTGAAGAAAGCTTTATATGAGGTTTCGTCTAGGCTTCATGAAAATCCTCCCAAAGAGCGACTTCAATTAAACAACCCTGTTACTGCTTTCGGCCATAACCCTTTTCTTTCTTCGGCTGGACAATTGTTTTCCCCGGGGAGCATGTTGTCCCAGGGTACTGCTCCTATTGTTGGCATTGCACCACATATGCCTGCAGTTGGTGGATATAGGAGTGAAGCTAGTGCTGCGTGGCCTCTCAGTTCATCTGGATATCCGGTACTTACTGGTTTGGGTGGTCCTCATAGAAGAGATGATGCTTCTGCGGAAGAGTTTGTATTTCAATTGTTGTGCCGGAATGATAAAATTGGTGGCGTAATAGGAAAAGGTGGTGGTGTGATCAACCAAATTAGACAGGAGACGGGAGCAAATATTAAGGTCCTAGAGCAAGTACCTGATTGTGATGAGCGTGTGATTGTAGTGTCCTCTAAAGAGTATGCCGATGATCGCGTTTCCCCTACTATGGAGGCTGTACTTCAATTGCAATTCAAGGCTAGTGAAAAATCGACGGACGAAGGTAAAGAAGGTGTCATCACTACAAGGTTTCTTGTGCCGTCCATAAATATAGGTTGCCTTTTAGGGAAAGGTGGTAGCATTATTTCCGAAATGCGAAAGAGGACTCGAGCCAACATTCGCATAATGTCAAAAGATAATCTTCCCAAATGTGCTAGCGAAGATGAAGAACTTGTACAGGTTATTGGTGAGGTTGATGTTGCTAGAGATGCTCTAATTCAAATTGCAACAAGGCTCAGGGCAAATGTATTTAAAGACAGTGATGGTGGGGCAACTGCTGGGTCTGTGGTTCCTCCATCTCTCTCTTTATATGGTAGGGGGATTGCTGACTCAGGTTTTGGACGTGGCGATGAGTTGGGATCAACTGGTAGAATGTATTCTCTGTCAAGTTTAGGTTTAGAAGGGACTGGTGCGGGGAGATATTCATCTTATGGTAGCTTGGGAAGCACGAATGGTGCTGGTGGGTATGGATCTCTCTCTAGCTTTTCAACCAGTCGATCTGCAGCTGGGGGTTTACCTGCTGGAGTACCGAAATCTGGATCTACCGTTGAGGTTACAATACCAAATAAATCAGTTGGTTCTATTCTCGGGAGAGGTGGATCAAATATATCTCAAATTCGTGAGATTTCAGGAGCAAAAGTGAAGTTGCATGAATCAAAACCTGGAGGTACAGACCGTGTTGTTGAGATCTCCGGGACACCAGAACAGACACATGCAGCCCAAAGCCTGCTTCAGGCATTTGCAATGTCTGGTCAAAATACACGAACAGCACGTGCTTTATAG___AACAGATAGTCTCACATATCAGATGGGCCATTTGTTCATTTGCTTTCTGAACACACGACAATAGTACATCCATGAGCAGGTAATCCTAAAATATGATCATTATTTATTTGCATTAGCATTTCAATACAGAAAGGATCTACATCAATTCAAAAATATTTTATGCATTCATTTGTTTGTAAATATTTTCCAAGCTTGCTTTTGCATTCGTGTAAGTCATACCTTGTATTAGTGTGAACCATATCCAACATGCAGATTTTTTTCTTCGAATATTGACGTAATAGGTGTTTTGACCTGACCTTCACATGAAGGTTCGAAGAAGGAAATCTGAATGGTGGGTATGTTTCGCTTAATGTGTCATTCCTTCATTCTGTTTTTGTATTACCTTCATTTCATTTGCTAAGATGGTTCTATTTTTGTCTGATTTTTTATTCTCATGAATTCGCTTCAATCTCTATTAACAATAGGGAAGAAGACCAAGTAATTGGTCCAGATTTAATTGGTTTTGAGTTTTTTAGTTTTTCGAGTATGCTTCGATGTTATTAACCTTGTATTGCAGAATCGTAGAATTCATCTTAAACTTTGAAGTATTGAACTCTCTCGTTTCAAAGATTTAATAAGAACTGTTCTTATTTCTACAAAATGTACTTGCATTGCACAATAGTAGCTGTCCCCACAGAATATTTTCAATATTATTTGAAGATGTACTACTCTTATCAATAAATGTATCAAAGGATCGTTGTTCATTATCTTTTTAATGTGTGGTGCTTTTGCCGGGAATTATTTGTGATGTGGTATTTTCCTTTGACACTCTAATATACTGAT

Fln Alignment:

Contig8505___LRQNTRAKIKVADGIPGVDERVIIIFSSPXXXXXXXXXXXXXXXXXXGKSPLCAAQDALFRVFGRIVXXXXXXXXXXXXXAKQA--TVRLLVPNNQIGCLLGRGGKVIEKMRTDTGAQIKILPKEQLPSCAMATDELVQIAGAYSVVKKALYEVSSRLHENPPKERLQLNN----------------PVTAFGHNPFLSSAGQLFSPGSMLSQGTAPIVGIAPHMPAVGGYRSEASAAWPLSSSGYPVLTGLGGPHRRDDASAEEFVFQLLCRNDXXXXXXXXXXXXXNQIRQETGANIKVLEQVPDCDERVIVVS
D5ABA1______________IRQETGANIKVIDQVPDCDERVIVVSSKEF------------------------VDDRISPTLEAVLHLQFKTSEKSIEEGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTRANIRIMSKDNIPKCAGENEELVQVIGEVDVAREALIQIATRLRSNVFKDQDGGSNAGSVVPPSLSLYGRGVPDSGFGRGDELGSTGRMYSLPSLGLEGTASGRYSSASYGSLGGVQNGGAGGYGSFSSFSTSRAPAGGLPAGVAKSGS--TVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEIS

SNPs (tot: 4)

Position	C %	G %	T %	Probability
2756		11	88	0.923564
2943		90	10	0.90298
2948	10		90	0.90298
2963	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain