SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8501

Length: 2336 nt

UniGene Fasta

>sp_v3.0_unigene8501
ATGGGGAAAGAAGAAAATCCCTTTTCTTTTGTGAGTGATACTTGAGTTGGTATCTTACAGGCTCGGCTCTTATCGCTCATCTGTTGATGGTCCGGGGGGATTGATCCACGAGCTCATCCAAGTCTGCTGCAGGAGAGGCTAGATCTGAAGGCTAGCAGTGGAAGGGCATTCGAGAGTTTGTGGAGCTAGGTTAGCGCAATGGCTTTGCTCGATGAACCACTGTATCCTATAGCTATTCTGATAGACGAACTGAAAAATGAGGATATTCATTTGCGACTAAATTCTGTTCGAAAACTTTCAACAATTGCACGCGCCCTTGGGGAAGAGAGAACCCGGAAGGAATTAATCCCATTCTTGAGTGAGAACAATGATGATGATGATGAGGTTTTGCTTGTAATGGCAGAAGAATTGGGGGTTTTTATTCCTTATGTTGGCGGAGTTGATTATGCGCATGTTTTGCTGCCTCCTTTAGAAACTCTTTGTACTGTAGAAGAAACAAGTGTGAGAGATAAAGCTGTGGATTCACTATGCCGAATTGGATCCCAAATGAAAGAAGGTGACCTATTGGACTGGTTTTCTCCACTTGTGAGGAGGCTTGCTGCAGGTGAATGGTTTACAGCACGTGTTTCTGCATGTGCACTCTTCCATATTGTCTACCCAAGTGCACCAGAAGTTTTGAAAGCAGATTTGTGTTCCATATATCATCAACTTTGCATGGATGATATGCCAATGGTTAGAAGATCAGCTGCATCAAATTTGGGAAAATTTGCTGCAGCAGTTGAGCCACAACACCTCTGTACAGACATCATTGAATGTTTTCAACATCTTACTCGTGATGATCAAGACTCAGTGAGACTGTTAGCGGTTGAGGGTTGTGCAGGCCTTGGAAAGCTGTTGGAACCACAGGATAGTGGGACACATATTCTTCCTGTCATTGTTGCTTTCTCTCAGGACAAATCTTGGCGAGTTCGTTACATGGTTGCGAATCAACTAAGCGAGCTTTGTGAGGCAGTTGGTCCTGAGAATACAAGGACGGAACTCCTGCCTGCATATGTTAAATTGCTACGTGACAATGAAGCAGAAGTACGAATTGCAGCAGCAGGAAAGGTGGCCAAGTTTTGTAGAATAATAAATAATCAGCTTGCTATTCAGCAAATCCTTCCCTGTGTGAAGGAGCTGTCAACAGATGCGTCTCAGCATGTCCGGTGTGCGTTGGCATCTGTAATCATGGGAATGGCACCTATCTTAGGGAAGGAAGCGACAGTTGAGCAACTTCTTCCTGTCTTCCTCGCGCTTCTGAAAGACGAATGTCCTGATGTTCGTCTTAATATAATAAGCAAGCTTGATCAAGTGAATCAGGTAATTGGAATCGATCTCTTATCTCAGTCACTGTTACCAGCTATAGTTCAGCTTGCAGAAGATCGGAATTGGAGAGTTCGGCTTGCAATAATCGAGTATATTCCTTTGCTGGCTAGTCAGTTGGGTGTTGGTTTTTTTGATGATAGACTCGGGAACCTCTGCATGAAGTGGCTTGAAGATCAGGTTTTCTCAATTCGTGATGCAGCTGCTAATAATTTGAAGCGACTTGCTGAAGAATTTGGCCCGGAATGGGCAATGCAGCGAATTATTCCACAGGTTCTGGAGATGATAAATAACCAACACTACTTATATCGAATGACAGTCTTGCATGCAATTTCACTTCTAGCCCCTGTCGTGGGTCCAGAGATAACATGTCAAACAATGTTGCCTGTTATCATTAGCGTAGCAAAGGACAGGGTTCCCAACATCAAATTTAATACTGCTAAGGTGTTACAGTCACTTATTCCAATTCTTGATCAGTCTGTTGTAGAGCAATCTGTTCATCCTTGTTTAGTTGAGCTAAGTGAAGATTCCGATGTTGATGTAAGATACTTTGCTGGCAAAGCGCTGCAGGCCTGTGACCAGGTCATGATGTCGGCTTGATTTTCGATTCAGAGGATTATTTCGGTTCAGATTGTTTATAAGGATTAATAAATTTTTATAAGAATATGTAATTTGTGAGAAATTGGCAGCTTTGACAATATTCAGACCTCACACACCTCTTTTAATACACATTCACTTGGTTTCTATGTAAGGGTGGGTTTTTTGCTTTACTTTTCTCTGATTCGTTTTGAGGTAAATGAGATTCGATGTTGAATACTAAAAATTCAAGAAGTTTCGACATTACACTATTTTCCAGTCAACATTTGTGTACACTGTACAGTAATAACAGGCATTGTCACATTCACTATTCTCATTTGAAATAAATATTGCTTTTACCAATATAAAGCATTCTACTTGCTGTTTTTGGATTTGAC

Ace file of the UniGene sp_v3.0_unigene8501

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform n=23 Tax=Magnoliophyta RepID=2AAB_ARATH	-	-	0.0	79%
FL-Next	sp=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%
Sma3	Serine/threonine protein phosphatase 2a regulatory subunit A, putative	-	-	8.35e-09	-

Source	Gene names
Sma3	At1g13320; At1g25490; At3g25800; CHLREDRAFT_131550; DF1; DF2; EER1; F2J7.19; GSVIVT00005452001; GSVIVT00007980001; GSVIVT00008259001; GSVIVT00017658001; GSVIVT00030313001; K13N2.14; MICPUCDRAFT_30915; MICPUN_97654; OJ1116_H10.3; OJ1695_A02.24; OSTLU_32622

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	-
Sma3	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	4-diphosphocytidyl-2C-methyl-D-erythritol synthase	IPR001228	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25800.1	PDF1, PR 65, PP2AA2 protein phosphatase 2A subunit A2 chr3:9422822-9425783 REVERSE LENGTH=587	81%
RefSeq	Arabidopsis thaliana	NP_189208.1	protein phosphatase 2A subunit A2 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002314877.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q38950

Fln msg:

Fln protein: MALLDEPLYPIAILIDELKNEDIHLRLNSVRKLSTIARALGEERTRKELIPFLSENNDDDDEVLLVMAEELGVFIPYVGGVDYAHVLLPPLETLCTVEETSVRDKAVDSLCRIGSQMKEGDLLDWFSPLVRRLAAGEWFTARVSACALFHIVYPSAPEVLKADLCSIYHQLCMDDMPMVRRSAASNLGKFAAAVEPQHLCTDIIECFQHLTRDDQDSVRLLAVEGCAGLGKLLEPQDSGTHILPVIVAFSQDKSWRVRYMVANQLSELCEAVGPENTRTELLPAYVKLLRDNEAEVRIAAAGKVAKFCRIINNQLAIQQILPCVKELSTDASQHVRCALASVIMGMAPILGKEATVEQLLPVFLALLKDECPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVQLAEDRNWRVRLAIIEYIPLLASQLGVGFFDDRLGNLCMKWLEDQVFSIRDAAANNLKRLAEEFGPEWAMQRIIPQVLEMINNQHYLYRMTVLHAISLLAPVVGPEITCQTMLPVIISVAKDRVPNIKFNTAKVLQSLIPILDQSVVEQSVHPCLVELSEDSDVDVRYFAGKALQACDQVMMSA*

Protein Length: 589

Fln nts: ATGGGGAAAGAAGAAAATCCCTTTTCTTTTGTGAGTGATACTTGAGTTGGTATCTTACAGGCTCGGCTCTTATCGCTCATCTGTTGATGGTCCGGGGGGATTGATCCACGAGCTCATCCAAGTCTGCTGCAGGAGAGGCTAGATCTGAAGGCTAGCAGTGGAAGGGCATTCGAGAGTTTGTGGAGCTAGGTTAGCGCA_-_ATGGCTTTGCTCGATGAACCACTGTATCCTATAGCTATTCTGATAGACGAACTGAAAAATGAGGATATTCATTTGCGACTAAATTCTGTTCGAAAACTTTCAACAATTGCACGCGCCCTTGGGGAAGAGAGAACCCGGAAGGAATTAATCCCATTCTTGAGTGAGAACAATGATGATGATGATGAGGTTTTGCTTGTAATGGCAGAAGAATTGGGGGTTTTTATTCCTTATGTTGGCGGAGTTGATTATGCGCATGTTTTGCTGCCTCCTTTAGAAACTCTTTGTACTGTAGAAGAAACAAGTGTGAGAGATAAAGCTGTGGATTCACTATGCCGAATTGGATCCCAAATGAAAGAAGGTGACCTATTGGACTGGTTTTCTCCACTTGTGAGGAGGCTTGCTGCAGGTGAATGGTTTACAGCACGTGTTTCTGCATGTGCACTCTTCCATATTGTCTACCCAAGTGCACCAGAAGTTTTGAAAGCAGATTTGTGTTCCATATATCATCAACTTTGCATGGATGATATGCCAATGGTTAGAAGATCAGCTGCATCAAATTTGGGAAAATTTGCTGCAGCAGTTGAGCCACAACACCTCTGTACAGACATCATTGAATGTTTTCAACATCTTACTCGTGATGATCAAGACTCAGTGAGACTGTTAGCGGTTGAGGGTTGTGCAGGCCTTGGAAAGCTGTTGGAACCACAGGATAGTGGGACACATATTCTTCCTGTCATTGTTGCTTTCTCTCAGGACAAATCTTGGCGAGTTCGTTACATGGTTGCGAATCAACTAAGCGAGCTTTGTGAGGCAGTTGGTCCTGAGAATACAAGGACGGAACTCCTGCCTGCATATGTTAAATTGCTACGTGACAATGAAGCAGAAGTACGAATTGCAGCAGCAGGAAAGGTGGCCAAGTTTTGTAGAATAATAAATAATCAGCTTGCTATTCAGCAAATCCTTCCCTGTGTGAAGGAGCTGTCAACAGATGCGTCTCAGCATGTCCGGTGTGCGTTGGCATCTGTAATCATGGGAATGGCACCTATCTTAGGGAAGGAAGCGACAGTTGAGCAACTTCTTCCTGTCTTCCTCGCGCTTCTGAAAGACGAATGTCCTGATGTTCGTCTTAATATAATAAGCAAGCTTGATCAAGTGAATCAGGTAATTGGAATCGATCTCTTATCTCAGTCACTGTTACCAGCTATAGTTCAGCTTGCAGAAGATCGGAATTGGAGAGTTCGGCTTGCAATAATCGAGTATATTCCTTTGCTGGCTAGTCAGTTGGGTGTTGGTTTTTTTGATGATAGACTCGGGAACCTCTGCATGAAGTGGCTTGAAGATCAGGTTTTCTCAATTCGTGATGCAGCTGCTAATAATTTGAAGCGACTTGCTGAAGAATTTGGCCCGGAATGGGCAATGCAGCGAATTATTCCACAGGTTCTGGAGATGATAAATAACCAACACTACTTATATCGAATGACAGTCTTGCATGCAATTTCACTTCTAGCCCCTGTCGTGGGTCCAGAGATAACATGTCAAACAATGTTGCCTGTTATCATTAGCGTAGCAAAGGACAGGGTTCCCAACATCAAATTTAATACTGCTAAGGTGTTACAGTCACTTATTCCAATTCTTGATCAGTCTGTTGTAGAGCAATCTGTTCATCCTTGTTTAGTTGAGCTAAGTGAAGATTCCGATGTTGATGTAAGATACTTTGCTGGCAAAGCGCTGCAGGCCTGTGACCAGGTCATGATGTCGGCTTGA___TTTTCGATTCAGAGGATTATTTCGGTTCAGATTGTTTATAAGGATTAATAAATTTTTATAAGAATATGTAATTTGTGAGAAATTGGCAGCTTTGACAATATTCAGACCTCACACACCTCTTTTAATACACATTCACTTGGTTTCTATGTAAGGGTGGGTTTTTTGCTTTACTTTTCTCTGATTCGTTTTGAGGTAAATGAGATTCGATGTTGAATACTAAAAATTCAAGAAGTTTCGACATTACACTATTTTCCAGTCAACATTTGTGTACACTGTACAGTAATAACAGGCATTGTCACATTCACTATTCTCATTTGAAATAAATATTGCTTTTACCAATATAAAGCATTCTACTTGCTGTTTTTGGATTTGAC

Fln Alignment:

Contig8501___MALLDEPLYPIAILIDELKNEDIHLRLNSVRKLSTIARALGEERTRKELIPFLSENNDDDDEVLLVMAEELGVFIPYVGGVDYAHVLLPPLETLCTVEETSVRDKAVDSLCRIGSQMKEGDLLDWFSPLVRRLAAGEWFTARVSACALFHIVYPSAPEVLKADLCSIYHQLCMDDMPMVRRSAASNLGKFAAAVEPQHLCTDIIECFQHLTRDDQDSVRLLAVEGCAGLGKLLEPQDSGTHILPVIVAFSQDKSWRVRYMVANQLSELCEAVGPENTRTELLPAYVKLLRDNEAEVRIAAAGKVAKFCRXXXXXXXXXXXXPCVKELSTDASQHVRCALASVIMGMAPILGKEATVEQLLPVFLALLKDECPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVQLAEDRNWRVRLAIIEYIPLLASQLGVGFFDDRLGNLCMKWLEDQVFSIRDAAANNLKRLAEEFGPEWAMQRIIPQVLEMINNQHYLYRMTVLHAISLLAPVVGPEITCQTMLPVIISVAKDRVPNIKFNTAKVLQSLIPILDQSVVEQSVHPCLVELSEDSDVDVRYFAGKALQACDQVMMSA
Q38950______________MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
167	26		73		1.0
632			83	16	0.994512
811		12		87	0.992554
893		88		11	0.923564
1430	8			92	0.999718
1431		8	92		0.999718
1432	8		92		0.999718
1433	91			8	0.999766
1903		2		97	0.971188
2068			88	11	0.923564
2069	88			11	0.923564
2165	91		8		0.999807
2300		12		88	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
368	383	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain