SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8500

Length: 817 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8500 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	1.99993e-41	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72890.2	Disease resistance protein (TIR-NBS class) chr1:27429947-27431926 FORWARD LENGTH=487	1.0e-19	47%
RefSeq	Arabidopsis thaliana	NP_001185387.1	TIR-NBS class of disease resistance protein [Arabidopsis thaliana]	2.0e-19	47%

Full-Lengther Next Prediction

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
114	25		75		0.996473
122			25	75	0.996473
160		12	87		0.992554
216	85	14			0.993533
271		66		33	1.0
290	83	16			0.994512
291		16		83	0.994512
292	16		83		0.994512
293			16	83	0.994512
313		25		75	0.996473
317		66		33	0.997452
325		33	66		0.997452
329	33		66		0.997452
337	33	66			0.997452
340		66	33		0.997452
351		33		66	0.997452
370		33	66		0.997452
374		33		66	1.0
375		33		66	0.997452
412		60		40	1.0
434		60		40	1.0
449	80		20		0.995493
458	50			50	1.0
468			50	50	1.0
469		50	50		1.0
470		50		50	1.0
485		66		33	0.997452
488		33	66		0.997452
491		66	33		0.997452
494	33	66			0.997452
500		66	33		0.997452
502	33	66			0.997452
507	33			66	0.997452
515		33	66		0.997452
523		33	66		0.997452
540		75	25		0.996473
544		25		75	0.996473
556			20	80	0.995493
567		20	80		0.995493
571		80		20	0.995493
580		60		40	1.0
588	40		60		1.0
604		20		80	0.995493
607		80		20	0.995493
667	33		66		1.0
673		33		66	1.0
705	16		83		0.994512
706	16		83		0.994512
708	16		83		0.994512
709	33		66		1.0
712			83	16	0.994512
713	83		16		0.994512
720	83	16			0.994512
721	50		50		1.0
723	83		16		0.994512
726	16	83			0.994512
727		16		83	0.994512
730		16	50	33	1.0
738	66		33		0.997452
740	66			33	0.997452
745		66		33	0.997452
751	66	33			0.997452
753		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
171	184	TCG TCG TCG TCG TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain