SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8495

Length: 1349 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8495

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU	-	-	1.0e-27	37%
FL-Next	sp=Ethylene-responsive transcription factor 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	44%
Sma3	AP2/ERF domain-containing transcription factor	-	-	7.191e-38	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; 26.t00057; 27.t00030; 46C02.12; ACRE1; Aa6_7580; At1g04370; At1g06160; At3g23220; At3g23230; At4g17490; At4g17500; At4g18450; At5g07580; At5g43410; At5g51190; At5g61590; At5g61600; B1234D02.6; B1331F11.13; Bd5g07580; Bo_75

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17500.1	ATERF-1, ERF-1 ethylene responsive element binding factor 1 chr4:9759405-9760211 FORWARD LENGTH=268	3.0e-27	50%
RefSeq	Arabidopsis thaliana	NP_567530.4	ethylene-responsive transcription factor 1A [Arabidopsis thaliana]	4.0e-27	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84XB3

Fln msg: your sequence is longer than subject: 316 - 244

Fln protein: MNVLDQIRQHLLGKSDGSPSFCTGSPAESCLTENYASPNSWNASEELDSGFVQSALVSDSVEEEQTASENQPCGGSGGTRFSRPVLSITVPRRECFEWERRSASWGADSRNFVTACCPASIRRCLSCDWGKLPLDENDSQDMFLYGVLKEATQKGWTPLTPKEIKNTDIKQINPLQETGREVSEKDKKSGGRHFRGVRRRPWGKYAAEIRDSARQGSRVWLGTFETAEEAAFAYDRAAYKMRGTKALLNFPLDLVAKSMDSLSEDESCCRKRKLNGQAERGEEKRHHHGPNFEECGVESQESIVVEDGEQKRFTR*

Protein Length: 317

Fln nts: ATGGGCACAGACCTCAATTTGTGAGCGGATTAGGTCCCTAGGAATTATAATTCTTAATTTCTAAGGTTTTGGTTTCCCACATTGCAGAA_-_ATGAACGTCCTCGATCAGATTCGGCAACATCTGCTCGGGAAATCTGACGGCTCGCCTTCGTTCTGCACCGGATCACCGGCGGAGTCATGCTTGACGGAAAATTACGCGTCTCCTAACAGCTGGAACGCCTCAGAGGAACTGGACTCCGGCTTTGTCCAGAGCGCGCTGGTAAGCGATTCCGTTGAAGAAGAACAGACGGCGTCGGAGAATCAGCCATGCGGTGGCAGCGGCGGCACCAGGTTTTCCCGTCCGGTGCTCTCCATCACCGTTCCGCGGAGGGAATGCTTCGAGTGGGAGAGGCGTTCCGCTAGCTGGGGCGCGGATTCAAGGAATTTTGTCACCGCTTGTTGCCCGGCGTCCATCAGACGGTGCCTTTCCTGCGACTGGGGGAAGCTTCCGTTAGATGAAAACGATTCGCAGGACATGTTTCTATATGGGGTTCTCAAGGAAGCGACGCAGAAGGGTTGGACGCCGTTAACTCCAAAGGAAATCAAGAACACTGACATCAAACAGATAAATCCCCTGCAGGAGACGGGACGTGAGGTGTCGGAAAAGGACAAGAAGAGCGGGGGAAGGCATTTCCGGGGTGTGAGACGGCGGCCTTGGGGCAAATATGCGGCGGAGATAAGGGACTCTGCGCGGCAGGGATCTAGAGTGTGGCTCGGTACCTTCGAGACGGCGGAGGAAGCCGCCTTTGCATATGATCGCGCCGCTTACAAGATGAGGGGCACTAAGGCCTTGCTTAATTTCCCCCTTGATTTGGTTGCCAAGTCCATGGATTCCCTCAGTGAGGATGAGAGTTGCTGTAGAAAGAGGAAATTGAATGGGCAAGCAGAGAGGGGAGAAGAAAAGAGGCACCACCATGGGCCGAATTTCGAAGAGTGTGGGGTGGAATCTCAGGAATCGATCGTGGTGGAGGATGGAGAGCAGAAGAGATTTACACGATGA___ATGAATATTCGTGAGCGTGGGGTGGATTCTGAAGAGAACCGATCGCGGTGGAGGATGCAGAGCAGAAGTGGATATTCCTCATTTGGCTGAGGGATTCGGTGAAGTTGACTTGTAAATATTATGAATATATTTCATATAAAGTTATCCACATTAATTCTTTCTTCCTTCCACCTTTAAAGTGATTCTTCTTGGAATGCACATTGTGATTTGGTAAAGAGATTTGTCTCTTAAACCCTATTAGCAATCGCAATACAAAGATTATTTTTATTATTTTTAACTTAAAAGTGTAATCTGCCCCCCCTAAGTCTGCAA

Fln Alignment:

Contig8495___ASIRRCLSCDWGKLPLDENDSQDMFLYGVLKEATQKGWTP--LTPKEIKNTDIKQINPLQETGRE---VSEKDKKSGGRHFRGVRRRPWGKYAAEIRDSARQGSRVWLGXXXXXXXXXXXXXXXXXKMRGTKALLNFP-------------------LDLVAKSMDSLSEDESCCRKRKLNGQAERGEEKRHHHGPNFEECGVE
Q84XB3______________SSLMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMSTSVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRK-GVAAKQAELEVESRGPNVMKVGCQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
128	25		75		0.996473
130	75		25		0.996473
135		25		75	0.996473
141		75		25	0.996473
515		14		85	0.993533
517	14			85	0.993533
518			14	85	0.993533
546			83	16	0.994512
547		83		16	0.994512
761	16			83	0.994512
763		83	16		0.994512
930			85	14	0.993533
954	85		14		0.993533
1011	33		66		1.0
1106	87	12			0.992554
1107		12	87		0.992554
1111	87	12			0.992554
1113	87		12		0.992554
1115		12		87	0.992554
1116	12	87			0.992554
1173	71	28			1.0
1276	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain