SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8491

Length: 1294 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8491

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sentrin/sumo-specific protease, senp8, putative n=1 Tax=Ricinus communis RepID=B9T1Y6_RICCO	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Sentrin/sumo-specific protease, senp8, putative	-	-	1.696e-09	-

Source	Gene names
Sma3	At5g60190; GSVIVT00008016001; GSVIVT00024468001; PHYPADRAFT_168150; POPTRDRAFT_570658; RCOM_0624670; RCOM_1382280; VITISV_012458;

Source	GOs	Term	Type	Identity
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	NEDD8-specific protease activity	GO:0019784	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C5, adenain	IPR000855	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002319455.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEB4

Fln msg:

Fln protein: MDSVGDDEKVLSYGDVVLRRSDLKILQGRDYLNDRIIEFYFCYLSSSTSPKILLLAPSISFWIVNAPDASSLQQFVDPLKLPEKELVIFPINDNEDFSAAGGGSHWSLLVYSRRRNIFEHYDSSAQCNAVYGSKLFENIKSFMGPPASSATLALHFTPQQRNGYDCGLFVLAIVKELCACEGNISGDDWEAVLKSRVTASTVGEMRNQILDIINELSSKRCKTCSC*

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTAGGAAATACTATATCTGAAGTTACGTTCAGTGCCAACAGGGTCCATTGAGCCGGCGTGTAAGTCGAAAGGAATCCGCACCAAGGGGTTTCTACTGTCTATTCCAAGAGACTTGTAAAATGTCATATCCAAATTAAGCATATATCACCGCTTACATCCCAAAATATAGCCTGCGAATTCGACATTGTGGAGGCCCGGCGGGGAATTAGATTGTCAGGTTAGCACATTGTCATTCGAAGTTCAAACTGCCTTTATTTGTTGCTCTGTTCAAAATCAAGTTTGCACTGGTGACTGCATGCAATAGCTCGGTAAAAATCATTTTCCATTTTATAAAATACTTGAGGAATTTCGGTGGTCAAGACTTTTATATACTGAAAGAGTGATAT_-_ATGGATTCCGTGGGAGATGATGAAAAAGTGTTGAGCTATGGTGATGTTGTGTTAAGGAGATCTGATCTGAAGATTCTTCAAGGCCGTGATTATCTTAATGATCGTATCATTGAGTTTTATTTTTGCTACTTGTCTTCCTCCACCTCTCCTAAGATCCTTCTTCTTGCACCTTCAATATCATTCTGGATTGTGAATGCCCCTGATGCTAGTAGCCTCCAGCAATTTGTTGATCCCCTGAAGCTTCCAGAAAAGGAGCTGGTTATCTTCCCCATCAATGACAATGAAGACTTCAGTGCGGCAGGCGGTGGTTCACATTGGAGTTTGCTTGTATACAGTAGGAGAAGGAATATCTTTGAGCACTATGACAGTTCTGCACAGTGCAACGCAGTGTATGGAAGCAAATTATTTGAAAACATTAAGAGTTTTATGGGTCCTCCTGCATCATCTGCCACATTGGCCTTGCATTTCACACCTCAGCAAAGAAATGGCTATGACTGTGGTTTATTTGTCTTAGCCATAGTGAAAGAGTTGTGTGCATGTGAAGGAAACATTTCTGGTGATGATTGGGAAGCTGTCTTGAAGAGCCGAGTGACAGCATCTACAGTTGGAGAGATGAGAAACCAAATTTTAGATATAATCAATGAGCTGTCTAGCAAGAGATGCAAAACTTGTTCTTGTTGA___TTTTGATGCCATTAAGTGAAGTGCATTCATACAGTATTTGCGTCCTTTTTGGGGGTCACTTTTTTCTGGCAAAGCATCTAACCGGTATAATTGATTATGTTAACTATTTTATGTTCAACATTGTAGTTGCAATGTTTAGCCCTGTACAAATGCATTCATGTTAAGCTGCTTCAAAATAACTGCCATCTGTTTTATTAGGACGCTTATTGTC

Fln Alignment:

Contig8491___MDSVGDDEKVLSYGDVVLRRSDLKILQGRDYLNDRIIEFYFCYLSSSTSPKILLLAPSISFWIVNAPDASSLQQFVDPLKLPEKELVIFPINDNEDFSAAGGGSHWSLLVYSRRRNIFEHYDSSAQCNAVYGSKLFENIKSFMGPPASSATLALHFTPQQRNGYDCGLFVLAIVKELCACEGNISGDDWEAVLKSRVTASTVGEMRNQILDIINELSS
D5AEB4______________MDSMGEDEKVLSYADVVLRRSDLKILQGHYYLNDRIMEFYFCYLSSFSSPKILLVAPSVSFWILNAPDVRSLQLFVDPLKLPDKELVIFPVNDNIDVNMAGGGSHWSLLVYHRARNIFEHYDSHLQCNSLYAGKLFENIKSFMGPPASSSTLTLHFTPQQRNGYDCGVFVLAIVKELCACEGNISGDDWEAVLKSRVTTSAVGEMRSQILKIIDELSS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
35		16		83	0.994512
37	83			16	0.994512
38	83	16			0.994512
41			16	83	0.994512
44		16	83		0.994512
47		83	16		0.994512
48	83		16		0.994512
49		16	83		0.994512
52		83		16	0.994512
55	83			16	0.994512
67	14		85		0.993533
159	85		14		0.993533
366	16			83	0.994512
368	16		83		0.994512
369			83	16	0.994512
508		12		87	0.992554
553		14		85	0.993533
594		12		87	0.992554
770	87	12			0.999964
773		12		87	0.999964
774		87	12		0.999964
779		87		12	0.999964
784		87		12	0.999964
785	87	12			0.999964
788			87	12	0.999964
997	87	12			0.999964

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain