SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8490

Length: 1053 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8490

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9RAJ6_RICCO	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Acyl:coa ligase	-	-	3.716e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	2.86e-39	-
Sma3	Ligases, Forming carbon-sulfur bonds, Acid--thiol ligases.	EC:6.2.1.-	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Geraniol degradation	00281		%
Sma3	Tyrosine metabolism	00350		%
Sma3	Benzoate degradation	00362		%
Sma3	Fluorobenzoate degradation	00364		%
Sma3	alpha-Linolenic acid metabolism	00592		%
Sma3	Aminobenzoate degradation	00627		%
Sma3	Propanoate metabolism	00640		%
Sma3	Ethylbenzene degradation	00642		%
Sma3	Carbon fixation pathways in prokaryotes	00720		%
Sma3	Limonene and pinene degradation	00903		%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		%
Sma3	Biosynthesis of plant hormones	01070		%
Sma3	Metabolic pathways	01100		%
Sma3	Biosynthesis of secondary metabolites	01110		%
Sma3	4-coumarate--CoA ligase.	EC:6.2.1.12	-	-

Source	KEGGs	Term	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	4CL; 4CL-1; 4CL-2; 4CL-2a; 4CL.2; 4CL1; 4CL2; 4CL3; 4CL4; 4CL5; 4CLL1; 4CLL2; 4CLL3; 4CLL4; 4CLL5; 4CLL6; 4CLL7; 4CLL8; 4CLL9; 4cl; ABG-1; ACLL13; ACLL14; ACLL15; ACLL16; ACLL18\|Ptr4CL13; ACLL20; ACLL21; At1g20480; At1g20490; At1g20500; At1g20510; At1g516

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G63380.1	AMP-dependent synthetase and ligase family protein chr5:25387581-25390026 REVERSE LENGTH=562	49%
RefSeq	Arabidopsis thaliana	NP_201143.1	4-coumarate--CoA ligase-like 9 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002300662.1	acyl:coa ligase [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABX8

Fln msg: your sequence is shorter than subject: 296 - 373

Fln protein: WAIGATVVILPKFSMEGMLLAIQRYRVTHIPAVPAIAIRLCKLPDVDQKYDLSSLKEVITSGASMGREQMEAFRSRFPGIGISQIYGMTEMNGSVIKSEGNDIKHYGSVGILVPNVEAKVVDIVTGNPLPPNRRGELCFRGPMVMKGYYKNNEATSSSIDSEGWLHSGDICCINEEGHVYIVDRLKELIKYKGLQIAPAELEELLLSNPEIEDSAVIPYPDEEAGEVPMAFIARKPQSNLTEGDVIEFIGRQVAPYKKIRRVAFVVSIPRTESGKILRKHLRALVEPKSSTLSRL*

Protein Length: 297

Fln nts: ATGGGCAATAGGGGCAACTGTGGTCATCTTGCCCAAATTTTCAATGGAGGGAATGCTACTGGCTATTCAGAGATACAGGGTAACACACATTCCGGCTGTTCCCGCTATTGCCATTCGGCTCTGTAAGTTGCCCGACGTCGACCAAAAATACGATTTGAGTTCTCTCAAGGAAGTTATTACAAGTGGGGCGTCTATGGGCAGAGAACAAATGGAAGCCTTCAGGAGCCGTTTCCCTGGCATTGGAATTTCACAGATATATGGAATGACTGAGATGAATGGTTCAGTCATAAAGAGTGAAGGAAACGACATCAAGCATTATGGTTCAGTGGGCATACTAGTCCCAAACGTGGAGGCTAAGGTGGTTGATATTGTAACAGGGAATCCCTTGCCTCCCAACAGAAGAGGCGAATTATGCTTCCGAGGCCCTATGGTTATGAAAGGATACTACAAGAACAATGAAGCGACATCATCGTCAATAGATTCAGAAGGCTGGTTGCATTCTGGAGATATTTGTTGTATCAATGAAGAAGGGCATGTATATATCGTAGACAGATTAAAAGAGCTCATCAAATACAAAGGGCTCCAGATAGCACCAGCCGAATTGGAAGAGCTTCTGCTGTCCAATCCAGAGATTGAAGACTCTGCAGTAATACCATACCCGGATGAAGAAGCGGGTGAAGTTCCTATGGCATTTATAGCGAGGAAGCCTCAAAGCAATCTAACAGAAGGGGATGTGATTGAATTTATTGGAAGACAGGTGGCTCCATACAAGAAGATAAGAAGAGTGGCGTTTGTGGTTTCCATTCCGCGAACTGAGTCTGGAAAAATTCTCAGAAAACATCTGAGAGCGCTCGTCGAGCCAAAATCTTCAACCCTTTCGAGGCTGTGA___ACTATCTGTCTTGCATCCTCAGCAGTAACCTTAATATTCTTCCATGAGATCAACTAGGTTTGGTAGCATGGGCTTTCAACTGATACTTGAACCATCTTGAAGGAGAGTATCTATTTCTGGTCGATATCCGTCGAGCCTAACGGCTATAAAGTCGAAATTACATT

Fln Alignment:

Contig8490___GATVVILPKFSMEGMLLAIQRYRVTHIPAVPAIAIRLCKLPDVDQKYDLSSLKEVITSGASMGREQMEAFRSRFPGIGISQIYGMTEMNGSVIKSEGND-IKHYGSVGILVPNVEAKVVDIVTGNPLPPNRRGELCFRGPMVMKGYYKNNEATSSSIDSEGWLHSGDICCINEEGHVYIVDRLKELIKYKGLQIAPAELEELLLSNPEIEDSAVIPYPDEEAGEVPMAFIARKPQSNLTEGDVIEFIGRQVAPYKKIRRVAFVVSIPRTESGKILRKHLRALVEPK
D5ABX8______________GSTIVVLSKFDVMEMLAAVEKYRVTYLPIVPPILLALTKT-DIARKYDLRSLHTVICGGAPLSKESAEEFVARFPSVSLLQGYGLTETTGRGASTENEEESRHYGSVGMLTPNIEAKIVDPDSITPLPPNKKGELWLRGPVVMKGYFNNPEATASALDKDGWLRTGDLCYIDDNGYLFVVDRLKELIKYKGYQVAPAELEALLLSHPEIAEAAVIPFEDREAGQVPMAYIVRKPGSTLYETNVTDFVAQQVAPYKKVRRVAFVSEIPKTAAGKTLRKDLIKLATSK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
823	25		75		0.996473
824		25	75		0.996473
826	66			33	0.997452
827	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain