SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8482

Length: 2593 nt

UniGene Fasta

>sp_v3.0_unigene8482
ATGGGGACCATCATGGATCAGATCGCAGATGGGTTTTCCAGGCCTTCCTGTAAACATTGAGCCATTGGGTATAGTTTTCCCAGTTTGCGCAGGTTAATTTTTGATCTCCTTCATGGCGACGAAGAAGTTGCAGAGCCCCATGTTCTCTGATACGAACTGTGGTTCCTTGTTGCAAGATCTAGAGTTGATATGGGATGAAGTGGGTGCGAGTGATGGTGAAAGGGAGAAGATGTTGCTGCAATTAGAGCAAGAATGCTTAGAGGTCTACAGAAGGAAGGTGGATCAAGCTAATCTCTCAAGGGCTCGCTTGCATCAGTTACTTGCCGATTCTGAAGTCGAGCTAGAACATCTCATCTCTGCTCTTGGTGAAAGATCTTTCGTAGGCCGGCCAGAGAAGCAAACGGGTACGTTGAAGGAACAACTAGCTGCAATTGCGCCAGGTTTGGGTGATCTAAGGAAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTCAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATGGGGCTCGACTTCTCTAAGATTGTTTCTGAAGTTCATCCAAGCTTGGACGATTCTGCAGGCAATCAGTCAAAAAGCATAAGTAATGACACCCTTGCCAAGTTGGCCAAAACAGTTGAATCTCTAAAAGAAGAGAAGCAGCAGCGGTTGCAAAAGATCCAAGAACTGGGCACAACATTGATTGAATTGTGGAATCTAATGGATATCACTATGGAGGAACAGAAACATTTTGATCATGTAACTTGCTACATTTCAGCTTCTGTGGATGAGGTGTCAATGCCAAGAGCGCTTGCTTCCAATATCATTGACCAGGCTGAGGTTGAAGTGAAGAGATTGGATCGGTTAAAGGCTGGAAAAATGAAGGAGCTTCTGCATAAAAAACAAACAGAGCTTGAAGAGATATACCGGAAGGCTCATATGGAAATAGACACCAACTCTGCACAGGAGAAGATAATGGCTATGATTGATTCTGGAACCATTAATCATTCGGATCTTCTAGCAAGCATGGATGATCAGATTTCCAAAGCAAAAGAAGAAGCACTCAGTAGAAAAGAAATAATGGAGAAGGTGGACAAATGGATGGCAGCTTGTGAAGAAGAAAGTTGGCTTGAAGATTACAACAGGGATGAAAACAGGTACAGTGTGAGTAGAGGTGCCCATATAAACCTTAAGCGTGCAGAACGAGCCCGTGTGATTGTCAATAAAATTCCTGCACTTGTGGATTCATTGATGGCAAAAACTAGGGCTTGGGAGGAAGAAAGGGGAACAACTTTCTTCTATGATGAAGTTCCACTTTTAGCAATGCTAGATGAATACAACATGATGAGACAGGAGAGAGAAGAGGAGAAACTGAGGCTCAGGGATAAAAAGCGCTTTCAGGGCCAGTTGGCAAGTGAACCAGAACCATTTTTTGTTGCAAAGCCAACTCCCCACAGGCAACTTTCAACAAAGAGAAGTACAGGGCTACGTCCAAATGGAAATTCTGTGGATGGCACTCCTTTGAATCACCGATTATCTCTCGGTGTTCAGCAAACTGCTCGGAAAGGCTTGTCTGTCCATAGAGAAGGAAAAAGGGAGCTTAATAGATCAATGATCCCTCAAAATTATTTTTCTCTTTCTAAGGAAGATTCAACTTCACAAGCTTCTGCAAATGGCTCAACACTGTCCTCCTCATAGGGGAAGAATTGCATTTACTATTTAGTGCAGTTTGAGGATTATTACACCGCATACATTGAGGTAGTATGTGCAATGCATACAACATAAGGTGTGGCCATTCGCTACTGAACAGAGTCAAAATTCAAACAATCAACCAATTAGGTTTCCAGGTTCTGTGTGAGGATTTTGGTGAATTGCATATATCCATGGCTTTCTTTGGATGCAGTTTGGATCGGGTTTTTGCCTGTATCCACTTCATCTTGCTCCATTATAACAAATTTGTAAAGAATATTTCATTGCAGGTGTTTTCAATAATTAGGTCAGTGGGCTTGGTTCTCCTGGCTTATATGAGGTCATAGTTCTTAGTTCAATCATGAAAAACAAGTAACTTGCTTGTTGTACATTAAATAAATATTAAATCAATCAGTTCATCTTGATCCTGAATATCAGTTGGTTTTGGTATTGGTACCAATCCATTTCAACTCCTCCAAGGATCCTACTTGTATATGTAGATCCAGATCAATCCAAACATTCATTCATGACAGTCCAGTTTCTAGCAGATCTTTCTATCAGTGTTACTTACCATTTTCCTTGAGGAGTTAAAGAATGCTTCTTTGCTGAATTACACGTTCCTTGGGAAGTTGAAGCATGCTTCTATCCTGAATTATGTAGTTGCTGTTTTAATGCTTATATTGCAGTCAGCTTGTAGAATTAGATCACAGGTGTGTTTGA

Ace file of the UniGene sp_v3.0_unigene8482

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Microtubule-associated protein MAP65-1a	-	-	4.441e-27	-

Source	Gene names
Sma3	AT2G01910; AT4g26760; At1g14690; At1g27920; At2g01910; At2g38720; At5g51600; At5g55230; At5g62250; B1377B10.2; F10M23.100; F13K9.3; GSVIVT00002052001; GSVIVT00002822001; GSVIVT00026353001; GSVIVT00027255001; GSVIVT00030649001; GSVIVT00038478001; LOC_Os03g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	microtubule cytoskeleton organization	GO:0000226	Biological Process	-
Sma3	nuclear division	GO:0000280	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	cytokinesis by cell plate formation	GO:0000911	Biological Process	-
Sma3	microtubule bundle formation	GO:0001578	Biological Process	-
Sma3	microtubule nucleation	GO:0007020	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	positive regulation of microtubule polymerization	GO:0031116	Biological Process	-
Sma3	anaphase	GO:0051322	Biological Process	-
Sma3	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55230.2	MAP65-1 microtubule-associated proteins 65-1 chr5:22402716-22405182 FORWARD LENGTH=616	56%
RefSeq	Arabidopsis thaliana	NP_200334.1	microtubule-associated proteins 65-1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002298820.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg:

Fln protein: MATKKLQSPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEVELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPGLGDLRKKKEERVKKFMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAKTVESLKEEKQQRLQKIQELGTTLIELWNLMDITMEEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKELLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQISKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMAKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRFQGQLASEPEPFFVAKPTPHRQLSTKRSTGLRPNGNSVDGTPLNHRLSLGVQQTARKGLSVHREGKRELNRSMIPQNYFSLSKEDSTSQASANGSTLSSS*

Protein Length: 591

Fln nts: ATGGGGACCATCATGGATCAGATCGCAGATGGGTTTTCCAGGCCTTCCTGTAAACATTGAGCCATTGGGTATAGTTTTCCCAGTTTGCGCAGGTTAATTTTTGATCTCCTTC_-_ATGGCGACGAAGAAGTTGCAGAGCCCCATGTTCTCTGATACGAACTGTGGTTCCTTGTTGCAAGATCTAGAGTTGATATGGGATGAAGTGGGTGCGAGTGATGGTGAAAGGGAGAAGATGTTGCTGCAATTAGAGCAAGAATGCTTAGAGGTCTACAGAAGGAAGGTGGATCAAGCTAATCTCTCAAGGGCTCGCTTGCATCAGTTACTTGCCGATTCTGAAGTCGAGCTAGAACATCTCATCTCTGCTCTTGGTGAAAGATCTTTCGTAGGCCGGCCAGAGAAGCAAACGGGTACGTTGAAGGAACAACTAGCTGCAATTGCGCCAGGTTTGGGTGATCTAAGGAAGAAAAAGGAGGAGAGGGTCAAGAAGTTTATGGACGTTCAAGGGCAGATTCAGAGTATCTGTGCAGAAATTGCAGGAATTTTGAATGTCAATGGTTTATGTACAACTCCAAAAGTGGATGAGCATGATCTATCTCTAAAGAAACTTGACGAATTCCATGCTCAACTTCAAGAGCTTCATAGAGAAAAGAATGATAGACTTCAGAAAGTTTTTGACTATGTTAACACTGTGCATGCTCTTTCGGCTGTCATGGGGCTCGACTTCTCTAAGATTGTTTCTGAAGTTCATCCAAGCTTGGACGATTCTGCAGGCAATCAGTCAAAAAGCATAAGTAATGACACCCTTGCCAAGTTGGCCAAAACAGTTGAATCTCTAAAAGAAGAGAAGCAGCAGCGGTTGCAAAAGATCCAAGAACTGGGCACAACATTGATTGAATTGTGGAATCTAATGGATATCACTATGGAGGAACAGAAACATTTTGATCATGTAACTTGCTACATTTCAGCTTCTGTGGATGAGGTGTCAATGCCAAGAGCGCTTGCTTCCAATATCATTGACCAGGCTGAGGTTGAAGTGAAGAGATTGGATCGGTTAAAGGCTGGAAAAATGAAGGAGCTTCTGCATAAAAAACAAACAGAGCTTGAAGAGATATACCGGAAGGCTCATATGGAAATAGACACCAACTCTGCACAGGAGAAGATAATGGCTATGATTGATTCTGGAACCATTAATCATTCGGATCTTCTAGCAAGCATGGATGATCAGATTTCCAAAGCAAAAGAAGAAGCACTCAGTAGAAAAGAAATAATGGAGAAGGTGGACAAATGGATGGCAGCTTGTGAAGAAGAAAGTTGGCTTGAAGATTACAACAGGGATGAAAACAGGTACAGTGTGAGTAGAGGTGCCCATATAAACCTTAAGCGTGCAGAACGAGCCCGTGTGATTGTCAATAAAATTCCTGCACTTGTGGATTCATTGATGGCAAAAACTAGGGCTTGGGAGGAAGAAAGGGGAACAACTTTCTTCTATGATGAAGTTCCACTTTTAGCAATGCTAGATGAATACAACATGATGAGACAGGAGAGAGAAGAGGAGAAACTGAGGCTCAGGGATAAAAAGCGCTTTCAGGGCCAGTTGGCAAGTGAACCAGAACCATTTTTTGTTGCAAAGCCAACTCCCCACAGGCAACTTTCAACAAAGAGAAGTACAGGGCTACGTCCAAATGGAAATTCTGTGGATGGCACTCCTTTGAATCACCGATTATCTCTCGGTGTTCAGCAAACTGCTCGGAAAGGCTTGTCTGTCCATAGAGAAGGAAAAAGGGAGCTTAATAGATCAATGATCCCTCAAAATTATTTTTCTCTTTCTAAGGAAGATTCAACTTCACAAGCTTCTGCAAATGGCTCAACACTGTCCTCCTCATAG___GGGAAGAATTGCATTTACTATTTAGTGCAGTTTGAGGATTATTACACCGCATACATTGAGGTAGTATGTGCAATGCATACAACATAAGGTGTGGCCATTCGCTACTGAACAGAGTCAAAATTCAAACAATCAACCAATTAGGTTTCCAGGTTCTGTGTGAGGATTTTGGTGAATTGCATATATCCATGGCTTTCTTTGGATGCAGTTTGGATCGGGTTTTTGCCTGTATCCACTTCATCTTGCTCCATTATAACAAATTTGTAAAGAATATTTCATTGCAGGTGTTTTCAATAATTAGGTCAGTGGGCTTGGTTCTCCTGGCTTATATGAGGTCATAGTTCTTAGTTCAATCATGAAAAACAAGTAACTTGCTTGTTGTACATTAAATAAATATTAAATCAATCAGTTCATCTTGATCCTGAATATCAGTTGGTTTTGGTATTGGTACCAATCCATTTCAACTCCTCCAAGGATCCTACTTGTATATGTAGATCCAGATCAATCCAAACATTCATTCATGACAGTCCAGTTTCTAGCAGATCTTTCTATCAGTGTTACTTACCATTTTCCTTGAGGAGTTAAAGAATGCTTCTTTGCTGAATTACACGTTCCTTGGGAAGTTGAAGCATGCTTCTATCCTGAATTATGTAGTTGCTGTTTTAATGCTTATATTGCAGTCAGCTTGTAGAATTAGATCACAGGTGTGTTTGA

Fln Alignment:

Contig8482___MATKKLQSPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEVELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPGLGDLRKKKEERVKKFMDVQGQIQSICAEIAGILNVNGLCTTPKVDEHDLSLKKLDEFHAQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAKTVESLKEEKQQRLQKIQELGTTLIELWNLMDITMEEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKELLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQISKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMAKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQXXXXXXXXXXXXXXFQGQLASEPEPFFVAKPTPHRQLSTKRSTGLRPNGNSVDGTPLNHRLSLGVQQT-------ARKGLSVHREGKRELNRSMIPQNYFSLSKEDSTSQASANGSTLSS
D5AC28______________MATKKLQRPMFSDTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALGERSFVGRPEKQTGTLKEQLAAIAPALGDLRKKKEERVKKFMDVQVQIQSICAEIAGNLNVNDLCTTPKVDEHDLSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMPRALASNIIDQAEVEVKRLDRLKAGKMKQLLHKKQTELEEIYRKAHMEIDTNSAQEKIMAMIDSGTINHSDLLASMDDQIAKAKEEALSRKEIMEKVDKWMAACEEESWLEDYNRDENRYSVSRGAHINLKRAERARVIVNKIPALVDSLMGKTRAWEEERGTTFFYDEVPLLAMLDEYNMMRQEREEEKLRLRDKKRLQGQLANEPEPIFVAKPTPHRQLSTKRSTGLRANGNSVDATPLNRRLSLGVQQTGMNGVNPARQGLSVQRDGKREHNRSMIPRNYFSLSKEDSASQPSANGSTVSS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
274	66			33	0.997452
306		25		75	0.996473
432	80		20		0.995493
630	66		33		1.0
632	83	16			0.994512
696		25		75	0.996473
898		20		80	0.995493
1017		83		16	0.994512
1031	83		16		0.994512
1054	85			14	0.993533
1055	85		14		0.993533
1577	75		25		0.996473
1578	25		75		0.996473
1875	25	75			0.996473
1877		75	25		0.996473
1878		75	25		0.996473
1879			25	75	0.996473
1941	28			71	1.0
2110	36		63		1.0
2294	81		18		1.0
2319			46	53	1.0
2365			46	53	1.0
2390	53		46		1.0
2484		25	75		0.996473
2490	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain