SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8468

Length: 1103 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8468

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative zinc dependent protease [Trifolium pratense]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Cell division protease ftsH homolog	-	-	1.981e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	-
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	7.492e-16	-

Source	Gene names
Sma3	AAA; AT2G30950; AT5G42270; At1g06430; At1g07510; At1g50250; At2g26140; At2g29080; At2g30950; At3g02450; At3g02450/F16B3.8; At3g47060; At5g15250; At5g42270; At5g53170; At5g58870; B1040D09.10-1; B1040D09.11; B1151A10.24-2; B1151A10.26-1; CHLREDRAFT_116904;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	thylakoid membrane organization	GO:0010027	Biological Process	-
Sma3	photoinhibition	GO:0010205	Biological Process	-
Sma3	photosystem II repair	GO:0010206	Biological Process	-
Sma3	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	regulation of apoptotic process	GO:0042981	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	Caspase Recruitment	IPR001315	-	-
Sma3		IPR001984	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR017909	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30950.1	VAR2, FTSH2 FtsH extracellular protease family chr2:13174692-13177064 FORWARD LENGTH=695	80%
RefSeq	Arabidopsis thaliana	NP_850156.1	cell division protease ftsH-2 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002332995.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 367 - 695

Fln protein: GSEFIEMFVGVGASRIRDLFKKAKENAPCIIFIDELDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQVTVDVPDVSGRKAILKVHASNKKLDKDVSLDIVAMRTPGFSGADLANLLNEAAILAGRRGKQSISVREIDDSIDRIVAGMEGTAMSDGKSKSLVAYHEVGHAICATLTPGHDPVQKVTLIPRGQARGLTWFLPEQDLSLITKEQIFARIVGALGGRAAEEIIFGEAEVTSGAASDLQQVTQIARQMVTVFGMSEIGPWALMDPVVRSSDVVLRMMARNSMSEKLLEDIDKAIKNITDKAYDVAKSHIRNNRAAMDKIVEVLLEKETLS

Protein Length: 368

Fln nts: CTGGGTCTGAATTTATAGAGATGTTTGTAGGAGTAGGAGCCTCTAGGATTCGTGATCTTTTCAAGAAGGCAAAGGAAAATGCGCCTTGTATTATTTTCATAGATGAACTCGATGCAGTGGGAAGGCAGAGGGGAGCAGGAATTGGCGGAGGCAATGATGAACGAGAACAGACATTGAACCAATTGCTTACTGAGATGGATGGATTTGAAGGGAACACTGGAGTGATTGTCATTGCAGCCACCAATCGAGTTGATGTGCTGGATGCAGCTTTACTTCGGCCTGGAAGGTTCGACAGACAGGTCACTGTTGATGTTCCTGATGTTAGTGGTCGCAAAGCAATCCTTAAAGTCCATGCTAGCAACAAAAAACTGGATAAAGATGTCTCACTTGATATTGTGGCAATGAGAACGCCTGGCTTTAGTGGTGCTGATCTTGCAAACCTCTTAAATGAAGCTGCAATTCTTGCTGGAAGACGAGGAAAGCAATCCATATCAGTGAGGGAAATAGATGATTCAATAGACAGGATTGTGGCTGGTATGGAGGGCACAGCAATGAGTGATGGAAAAAGCAAGAGTTTGGTGGCTTACCATGAAGTTGGGCATGCAATTTGTGCCACATTGACTCCTGGGCATGACCCAGTTCAGAAAGTAACTCTTATACCTCGAGGACAAGCACGAGGTCTTACATGGTTTTTGCCAGAGCAGGACCTTAGTCTTATTACCAAGGAGCAAATTTTTGCTCGTATTGTGGGGGCTCTTGGTGGCAGGGCTGCTGAAGAAATTATTTTTGGTGAAGCTGAGGTCACATCAGGTGCAGCTAGTGATTTGCAGCAGGTGACACAGATAGCAAGACAGATGGTTACAGTTTTTGGGATGTCTGAAATTGGTCCATGGGCTTTAATGGATCCTGTAGTTCGAAGCAGTGATGTTGTGCTGCGCATGATGGCAAGGAATTCCATGTCGGAGAAACTATTAGAAGACATTGATAAGGCTATAAAAAATATTACAGACAAGGCATACGATGTGGCTAAAAGCCACATAAGGAACAACCGGGCGGCAATGGACAAGATTGTAGAGGTCTTATTAGAGAAGGAGACGCTTTCA

Fln Alignment:

Contig8468___GSEFIEMFVGVGASRIRDLFKKAKENAPCIIFIDELDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQVTVDVPDVSGRKAILKVHASNKKLDKDVSLDIVAMRTPGFSGXXXXXXXXXXXXXXGRRGKQSISVREIDDSIDRIVAGMEGTAMSDGKSKSLVAYHEVGHAICATLTPGHDPVQKVTLIPRGQARGLTWFLPEQDLSLITKEQIFARIVGALGGRAAEEIIFGEAEVTSGAASDLQQVTQIARQMVTVFGMSEIGPWALMDPVVRSSDVVLRMMARNSMSEKLLEDIDKAIKNITDKAYDVAKSHIRNNRAAMDKIVEVLLEKETLS
C0PQ75______________GSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGMEGTIMTDGKNKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPGDDPTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMSEIGPWSLMD-AAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMT

SNPs (tot: 5)

Position	A %	G %	T %	Probability
788	33		66	0.997452
790		33	33	0.997753
791		33	66	0.997452
825		75	25	0.996473
965	11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain