SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8457

Length: 2081 nt

UniGene Fasta

>sp_v3.0_unigene8457
CGGCTGCGGCTGCGGGATCCAAGGGCTTGACGGCGGAGGAGATGTTGATGCTGCCCACTGGTCCCCGTGAGCGCTCTGCTGATGAGGCGGATTACGGCGGTTCTGGGCGGCTTGGCGGCGGATTCCGGGACTACGGCAAGAGAGTAGGGGGAGGAGGCGCCGGGGGTTTTAGAGATGAGGGTGATGGGCAATGGGGCTCCAACCGGAGATCTTTTGGTGGAGGGTTTGAAGATGACCGGAAACCACAGACTAGGGTTACTGATTTTGAGCCTTCGAGAGCCGATGAGGTGGACAATTGGGCATCCGCGAAGAGAGTCGCTCCCCCGCCTCCAGTGAATTCCTTTAACAGAAGTAACAGGGAGAGGTATGATGCTGGTGGACAGGCTTCCAGATACGATGCGGGTGGGCAGGGGTCCAGAGCAGATGAGGTCGACAATTGGGCCATTGGGAAGAAGCCCGATTTGGGCGATCACAGATCTGGATCGTTCGGGTCCATGAACACCGAGCGATGGGGTGGTAGGAGAGGGGAAAGCTTTGGTTTTTCAGACAGGGACAAGGACAGCGACAGGGGAAGGCCTCGGCTTGTATTGCATCCGCCCAGTCGACCAAGGAATGATCCACTGCCGGCATCATCTTTATCAGACGCTCCAGAGGTCGATGCGCCAAAGACGAAACCGAAGTCAAATCCGTTCGGAAATGCTCGGCCCCGGGAGGAGATCTTGGCTAAAAGGGGTGACGATTGGAAGAAAGTGGACTCGGAGATTGAGAGCAGAACCTCCAGTCGTCCCACCAGCTCCCACTCGAGCCGCCCGCAAAGTCCTCTCACTGATGCTGCACCCCTTCAGGCTCGTCCTAAGGTTAATCCCTTTGGAGATGCGAAACCACGCGAAGTTTTGCTGGAACAGAAGGGAAAGGATTGGCGCAAAATGGATTTTGAGCTGGAGCATCGCGGAGTAAACAGACCTGAGACAGAGGAGGAGCGGAAGTTGAAGGAGGAAGTGAATTTTCTTAAGGAACTTGTGAAAAAATCTGCAGAGGATGAAGCTCAAATGAATGGATTGGCTTTAGAGGAGCCAGGCATGGACAAAATGCAACCCACTATGAAAGAGCTTATGTTGAAAGAAAAACAGTTGGAACGGTTGACCAGAGATTTGGATGATAAGATTCGTTTTGGGAAAAGAGGTGGGGATAGTAGACCTGGATCTGCAGCGGGAAGACCTTTTGAATATTCAGAAAGACCTGGTTCTCGGTCAGGGCTCTCAGATGGTGGAAGGAGCCATGATTCATTGGAAAGGCCTAGGTCACGAGGTGGGGAAGTTATGGCAGCAGATGTATGGATGAGCTCCAATGAAGGCCAGAGAGGGGTACATGTTGACCGGGAGAGGAGTTTTCAACAAAGAAACAGGTTGAATTCGAGAGAAAGATGGTGATTGCAGTCTTCAAGTGTGTTTTTCTTTGGAGGCACTTGCAATCTGTTACGTTATTTATTGTTCCATGATCGTTGTCGTAGTTCATTTTCCAACCTCCACATCTTTACTTTTAAGTCATCCATGAAGATCTACCATGTAAAACACTGATGCTGTTGAACCAATGGCCAATGAATTTTGGATTTTCTTTAAATATTCCAGCGAAATGCCCCTTAGTTAGGTGATATCTTATTTATTGATGTCTTCTCTCCATTTTGTACAACTTAAATTACAGTAATCCTTTCTGTCAATTCTTTCAAAGTCTGTTGCTGGAGTTTTCAGCTATCGGGTTTGAAACTTTTCTGATTCAGATATTCTTTCTAGGTGGAATTTGCTTCCTCAGCAAATTAAATTTAGGACTTTGAGGGTTGCAGTGAAGACTCACTGAATGAAGAGTTGTGTATTTCAGTGGTGGTCGGAGCTCACTATTTTGTGAATGAGCAATTACTTGTTTGTTTCAACTTTAATTTTGTAACAGTGCCCTTTCTGTTATGTTGTCTGTACTTATGGGGGTGATGTGTCATCTTATTAAACTATCTTTGTCATTAGTTTGTGTTGTAATAATCATTTCTATTGTTGGTATGTAGTTTTGTAGTTTACCATATTGAAATGTTC

Ace file of the UniGene sp_v3.0_unigene8457

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic initiation factor 4B n=4 Tax=Arabidopsis RepID=Q9LIN5_ARATH	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKF3

Fln msg: your sequence is shorter than subject: 476 - 567

Fln protein: AAAAGSKGLTAEEMLMLPTGPRERSADEADYGGSGRLGGGFRDYGKRVGGGGAGGFRDEGDGQWGSNRRSFGGGFEDDRKPQTRVTDFEPSRADEVDNWASAKRVAPPPPVNSFNRSNRERYDAGGQASRYDAGGQGSRADEVDNWAIGKKPDLGDHRSGSFGSMNTERWGGRRGESFGFSDRDKDSDRGRPRLVLHPPSRPRNDPLPASSLSDAPEVDAPKTKPKSNPFGNARPREEILAKRGDDWKKVDSEIESRTSSRPTSSHSSRPQSPLTDAAPLQARPKVNPFGDAKPREVLLEQKGKDWRKMDFELEHRGVNRPETEEERKLKEEVNFLKELVKKSAEDEAQMNGLALEEPGMDKMQPTMKELMLKEKQLERLTRDLDDKIRFGKRGGDSRPGSAAGRPFEYSERPGSRSGLSDGGRSHDSLERPRSRGGEVMAADVWMSSNEGQRGVHVDRERSFQQRNRLNSRERW*

Protein Length: 477

Fln nts: CGGCTGCGGCTGCGGGATCCAAGGGCTTGACGGCGGAGGAGATGTTGATGCTGCCCACTGGTCCCCGTGAGCGCTCTGCTGATGAGGCGGATTACGGCGGTTCTGGGCGGCTTGGCGGCGGATTCCGGGACTACGGCAAGAGAGTAGGGGGAGGAGGCGCCGGGGGTTTTAGAGATGAGGGTGATGGGCAATGGGGCTCCAACCGGAGATCTTTTGGTGGAGGGTTTGAAGATGACCGGAAACCACAGACTAGGGTTACTGATTTTGAGCCTTCGAGAGCCGATGAGGTGGACAATTGGGCATCCGCGAAGAGAGTCGCTCCCCCGCCTCCAGTGAATTCCTTTAACAGAAGTAACAGGGAGAGGTATGATGCTGGTGGACAGGCTTCCAGATACGATGCGGGTGGGCAGGGGTCCAGAGCAGATGAGGTCGACAATTGGGCCATTGGGAAGAAGCCCGATTTGGGCGATCACAGATCTGGATCGTTCGGGTCCATGAACACCGAGCGATGGGGTGGTAGGAGAGGGGAAAGCTTTGGTTTTTCAGACAGGGACAAGGACAGCGACAGGGGAAGGCCTCGGCTTGTATTGCATCCGCCCAGTCGACCAAGGAATGATCCACTGCCGGCATCATCTTTATCAGACGCTCCAGAGGTCGATGCGCCAAAGACGAAACCGAAGTCAAATCCGTTCGGAAATGCTCGGCCCCGGGAGGAGATCTTGGCTAAAAGGGGTGACGATTGGAAGAAAGTGGACTCGGAGATTGAGAGCAGAACCTCCAGTCGTCCCACCAGCTCCCACTCGAGCCGCCCGCAAAGTCCTCTCACTGATGCTGCACCCCTTCAGGCTCGTCCTAAGGTTAATCCCTTTGGAGATGCGAAACCACGCGAAGTTTTGCTGGAACAGAAGGGAAAGGATTGGCGCAAAATGGATTTTGAGCTGGAGCATCGCGGAGTAAACAGACCTGAGACAGAGGAGGAGCGGAAGTTGAAGGAGGAAGTGAATTTTCTTAAGGAACTTGTGAAAAAATCTGCAGAGGATGAAGCTCAAATGAATGGATTGGCTTTAGAGGAGCCAGGCATGGACAAAATGCAACCCACTATGAAAGAGCTTATGTTGAAAGAAAAACAGTTGGAACGGTTGACCAGAGATTTGGATGATAAGATTCGTTTTGGGAAAAGAGGTGGGGATAGTAGACCTGGATCTGCAGCGGGAAGACCTTTTGAATATTCAGAAAGACCTGGTTCTCGGTCAGGGCTCTCAGATGGTGGAAGGAGCCATGATTCATTGGAAAGGCCTAGGTCACGAGGTGGGGAAGTTATGGCAGCAGATGTATGGATGAGCTCCAATGAAGGCCAGAGAGGGGTACATGTTGACCGGGAGAGGAGTTTTCAACAAAGAAACAGGTTGAATTCGAGAGAAAGATGGTGA___TTGCAGTCTTCAAGTGTGTTTTTCTTTGGAGGCACTTGCAATCTGTTACGTTATTTATTGTTCCATGATCGTTGTCGTAGTTCATTTTCCAACCTCCACATCTTTACTTTTAAGTCATCCATGAAGATCTACCATGTAAAACACTGATGCTGTTGAACCAATGGCCAATGAATTTTGGATTTTCTTTAAATATTCCAGCGAAATGCCCCTTAGTTAGGTGATATCTTATTTATTGATGTCTTCTCTCCATTTTGTACAACTTAAATTACAGTAATCCTTTCTGTCAATTCTTTCAAAGTCTGTTGCTGGAGTTTTCAGCTATCGGGTTTGAAACTTTTCTGATTCAGATATTCTTTCTAGGTGGAATTTGCTTCCTCAGCAAATTAAATTTAGGACTTTGAGGGTTGCAGTGAAGACTCACTGAATGAAGAGTTGTGTATTTCAGTGGTGGTCGGAGCTCACTATTTTGTGAATGAGCAATTACTTGTTTGTTTCAACTTTAATTTTGTAACAGTGCCCTTTCTGTTATGTTGTCTGTACTTATGGGGGTGATGTGTCATCTTATTAAACTATCTTTGTCATTAGTTTGTGTTGTAATAATCATTTCTATTGTTGGTATGTAGTTTTGTAGTTTACCATATTGAAATGTTC

Fln Alignment:

Contig8457___AAAAGSKGLTAEEMLMLPTGPRERSADE-----AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQWGSNRRSFGGGFEDDRKPQTRVTDFEPSRADEVDNWASAKRVAPPPPVNSFNRSNRERYDAGGQASRYDAGGQGSRADEVDNWAIGKKPDLGDHRSGSFGSMNTERWGGRRGESFGFSDRDKDSDRGRPRLVLHPPSRPRNDPLPASSLSDAPEVDAPKTKPKSNPFGNARPREEILAKRGDDWKKVDSEIE-XXXXXXXXXXXXXXXXXXXXDAAPLQARPKVNPFGDAKPREVLLEQKGKDWRKMDFELEHRGVNRPXXXXXXXXXXXVNFLKELVKKSAEDEAQMNGLALEEPGMDKMQPTMKELMLKEKQLERLTRDLDDKIRFGKRGGDSRPGSAAGRPFEYSERPXXXXXXXXXXXXXXXXERPRSRGGE-VMAADVWMSSNEGQRGVHVDRERSFQQRNRLNSRERW
B8LKF3______________ASASVSKGLTTEELMMLPTGPRERSADEPDYGGSGRLGGGFRDYGKRVGGGGGGGGGGGGFRDEGDGQWGSNRRPFGGGFDDDRKPQTRVSDFEPSRADEADNWASTKKVAPPPPVNSFNRSSRERYDAGGQTSRYDASGQGSRADEADNWAAGKRLESSDHRSGSFGSMNAERWGGRRTEGFAFSDR--DSDRARPRLVLDPPSRPRNESLPAPLLSDAPQVDA--SKPKPNPFGFARPREEVLTKRGEDWKKLDSEIESRSSSRPTSAHSSRPQSPTLNDGAPPQSRPKVNPFGDAKPREVLLEKMGKDWRKMDFELEHRGTNRSETEEEWKLKEEVNFLKELVKKSAENEAQVDGLALGEQDMEQMQSTMKELVLKEKQLEQLTRDLDDKVRFGKRGGDSRPGSAAGRPFEYLERPGSRSGLSDGGRSHDSLERPRSRGGEGRVVADVWMSSNEGQRGVHVDRERSFQQRNRLNLRERW

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
446			14	85	0.993533
824	17	82			1.0
2015		16	83		0.994512
2050	33		66		0.997452
2054		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain