SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8403

Length: 3118 nt

UniGene Fasta

>sp_v3.0_unigene8403
GTAGGATAGAGAAGAGACACAGGATCCAGAAGTTGAATTTGCAATTGCTGGTGCAATGATGGGTAATGTGGTGGTTTAAATCTTATTTTGAGCATGGTTCAGCACTTGAGGGATGATGAATTGAAATCTAATCAAGAAGAGCTGGGTTTAGTGCTCAAACTTCTATTATACTGCTGCAAAATACGAGATAATAGGCAGGCATTGTTGCGCCTTGGTGCATTGGCATTGCTCTTGGAGACAGCTAGGAGGGCATTTTCTGTAGATGCTGTTGAACCTGCGGAAGGCATTCTTCTGATTGTTGAAAGTCTAGTTATGGAAGCTAATGAAAGTGACATTGGGATCACAGAGAGTGTGTCAACCATGTCCGATGACTGTAATGCTGCTGGTGAGCAAGCTGCAAAAGTAGTTCTGATGTTTTTGGAGAGACTAAGTCACCCATCTGGTCCCAAAGTGTCAAACAAACAGCAGCGTAACAATGAGATGGTGGCACGCATTTTGCCGTACTTGACCTATGGAGAACAAGCAGCCATGGAAGTTCTTGTTGAGCACTTCAATCCCTATTTGAAGGATTGGACTGAATTTGATGAGTTACAAAAGAGGCACCAAGAAAATATGAAAGATGAAAGTTTAGCGAAAATAGCAGCTGAACAAAGGCTTGCAGTTGAGAACTTTGTCAAGGTTTCTGAATCAACCAAGATTAATTCATTTGGTGAGAGGCTAAAAGATATTATCATTGAAAAAGGCATTGCGAGAGTGGCAGTTCAACATTTAAAAGAAGTATTTGCTGTCTTTGAGAGAGGCGACTTTAAGACTTCCCCAGAATGGATGCACGGCTTAAAGTTGCCATCAGTACCTGTGATTCTATCCATGTTGAGAGGCCTTGCCAGGGGACATCTTGGTATCCAACAATGCATTGATGAAGGAGGAGTATTGCCTCTCCTCCATGCACTAGAAGGTGTTCCTGGAGAAAGTGAGATTGGTGCAAGGGCAGAAAATCTGTTGGATACTCTTGCAGACAAGGATAGCAAGGGGGAAGGCTTTCTTGCAGATAAGGTACACCAGCTAAGGCATGCAACCAGGGACGAGATGCGCCGTCGAGCCTTGAGGAGGAGGGAGGAGTTACTTCAGGATCTTGGTATGCGATGGGAACTTGCTTCTGATGGCGGTGAGCGAATATTGGTTTCACAACCTGTTATTGAAGGCTTAGAAGAAGTTGAAGAGGAGGAGGCTGGATTAGCATGCATGGTGTGCAGAGAAGGATATAGCTTAAGGCCCACAGATATGCTGGGGGCTTACTCTTTTAGTAAACGTGTAAATTTGCCTCTTGGAACCACAAGTCATGCTCGTGGGGAATGGGTGTATACAACTGTTAGTCATTTTAATATTATACATTTTCAGTGCCATCAAGAGGCCAAGCGAGCAGATGCTTCACTAAAGAACCCTAAGAAGGAATGGGAGGGAGCAGCCTTACGCAACAATGAAACTCTCTGTAACAGTCTTTTTCCTTTGAGGGGACCTTCTGTGCCTATTCCCCAATATGCACGCTGTGTTGATCAATTTTGGGATTGTTTGAATGCCCTTGGGCGAGCTGATGGGGGTCGTCTCCGATTGCTTACTTATGATATTGTGCTGATGCTGGCTCGTTTTGCAACTGGAGCATCATTCAGCACTGATAGCAAAGGTGGTGGAAGAGAGAGCAACTCCCGGCTACTTCCTTTCATGGTACAGATGGCCCACCATTTACTAGACCAAGGAGGTATGAGTCAGCGACGTAATATGGCAAAAGTTATAACCAGTTACCTCACTTCACCATCTCAATTGGATACAGCTACCTCTGGATCAAAGCCATCTACGCCTACTACACAAAGATATGCAGCAACAGAAGAAACAGTCCAGTATATGATGGTACATGCTGTGCTACTTCAATCTCTTGATGAGTGGGAGCAACATCGTCACACTTTCCTTCAAAGGGGGATATACCATGCATACATGCAATACAAGCATGGACGCTCAGCATTGGCAGCCCCTGCATCCTCACCTTCATCTTCTCGTGCTTCATCTTCGGATTTGGCACCAGTGGATTCGAAAAGTGATGATATCAGTAGAGAAGATGCAGAATTGAGTGAAACCAGTGAAAATTATTTTGCTATTGTTCAACCCATGCTTATATATACTGGCCTTGTAGAACAGCTGCAGCGTTTTCTAAAGTGGGTTAAGCCAACTGCCCGAAAAAGTAGGACTATCGAAAATGAAAGAGAGAATAGTGAAAAAATTGGAGATGACAGTGGCAGTGGTCCTGTAAGTATGGAACCCTGGGAAGTTACCATGAGGGAGAGGTTGCAGGATGTAAAGGGTATGTTGGGCTTTGCAAAGGAGTTGATGAATTGGCTGGAAGAGATGCAAAGTGCCAGTGATATGCAGGAAGCTTTTGATATAATGGGTGCACTTGGTGATGTTCTCTCTGGTGGGTTTTCTCGGTGTGAGGATTTTGTGCAGCATGCTATTGCCTCTGGCCACACTAGATGAGGTTCATCCTGAAGGTATTTAAGGATTCTTGGTGTCTGGACTCTGGACTGTTGGGGGGGTGCTGAAAGCATTTCTATTATGGCATATTAGCATTTTTTTTCTCTTTTAAGTGCCACATTAGACGAGATGCTTCTTGAGGTTGCAATGATGTTGGGATGGTGGGGAATTTGTAATAGTAATTCTTCAGCCAGTGTAAAGTGAAGAGGGTGGTTTTTGAGTGCGGGACATTGCATGATATGTAATGGAGGTTTGCCTTTGTTGTTATGGTATTAACTTCCTAATTCAAGTTCCATTTCTTTCGTTAGGGAGTAGAAATAAGAATGTCTTGGTATTTGGTTCTGAGAACCTTCACTTATGTTTTTAAACCCTAGTAATGGATACCATGTTCAGATTTCCGGAAATGATGAGAACGAATCTTTTAGAACAATGAGCTTATAGGCTTTTTATGGTTCATTTGTACGGATATGTAGAGAAAAATGAACATTTCATATGTGGGGGTAAGTGGAGAGTGAACTCTCAGATATAAACCTACCAGTCATTGTACAACAATAAAAGGATCAACATGGACTAAGATAAATTGTGCATTCTTTAC

Ace file of the UniGene sp_v3.0_unigene8403

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SIX2_RICCO	-	-	0.0	57%
FL-Next	sp=Auxin transport protein BIG; Oryza sativa subsp. japonica (Rice).	-	-	0.0	65%

Source	Gene names
Sma3	BIG; F14P3.9; GSVIVT00038089001; MtrDRAFT_AC151523g36v2; OsI_30520; OsJ_28507; PHYPADRAFT_122877; PHYPADRAFT_206047; POPTRDRAFT_673089; RCOM_0790950; VITISV_016976;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02260.1	BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 auxin transport protein (BIG) chr3:431152-448489 REVERSE LENGTH=5098	64%
RefSeq	Arabidopsis thaliana	NP_186875.2	E3 ubiquitin-protein ligase UBR4 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002330931.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: B9G2A8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 842 - 4965

Fln protein: VG*RRDTGSRS*ICNCWCNDG*CGGLNLILSMVQHLRDDELKSNQEELGLVLKLLLYCCKIRDNRQALLRLGALALLLETARRAFSVDAVEPAEGILLIVESLVMEANESDIGITESVSTMSDDCNAAGEQAAKVVLMFLERLSHPSGPKVSNKQQRNNEMVARILPYLTYGEQAAMEVLVEHFNPYLKDWTEFDELQKRHQENMKDESLAKIAAEQRLAVENFVKVSESTKINSFGERLKDIIIEKGIARVAVQHLKEVFAVFERGDFKTSPEWMHGLKLPSVPVILSMLRGLARGHLGIQQCIDEGGVLPLLHALEGVPGESEIGARAENLLDTLADKDSKGEGFLADKVHQLRHATRDEMRRRALRRREELLQDLGMRWELASDGGERILVSQPVIEGLEEVEEEEAGLACMVCREGYSLRPTDMLGAYSFSKRVNLPLGTTSHARGEWVYTTVSHFNIIHFQCHQEAKRADASLKNPKKEWEGAALRNNETLCNSLFPLRGPSVPIPQYARCVDQFWDCLNALGRADGGRLRLLTYDIVLMLARFATGASFSTDSKGGGRESNSRLLPFMVQMAHHLLDQGGMSQRRNMAKVITSYLTSPSQLDTATSGSKPSTPTTQRYAATEETVQYMMVHAVLLQSLDEWEQHRHTFLQRGIYHAYMQYKHGRSALAAPASSPSSSRASSSDLAPVDSKSDDISREDAELSETSENYFAIVQPMLIYTGLVEQLQRFLKWVKPTARKSRTIENERENSEKIGDDSGSGPVSMEPWEVTMRERLQDVKGMLGFAKELMNWLEEMQSASDMQEAFDIMGALGDVLSGGFSRCEDFVQHAIASGHTR*

Protein Length: 843

Fln nts: GTAGGATAGAGAAGAGACACAGGATCCAGAAGTTGAATTTGCAATTGCTGGTGCAATGATGGGTAATGTGGTGGTTTAAATCTTATTTTGAGCATGGTTCAGCACTTGAGGGATGATGAATTGAAATCTAATCAAGAAGAGCTGGGTTTAGTGCTCAAACTTCTATTATACTGCTGCAAAATACGAGATAATAGGCAGGCATTGTTGCGCCTTGGTGCATTGGCATTGCTCTTGGAGACAGCTAGGAGGGCATTTTCTGTAGATGCTGTTGAACCTGCGGAAGGCATTCTTCTGATTGTTGAAAGTCTAGTTATGGAAGCTAATGAAAGTGACATTGGGATCACAGAGAGTGTGTCAACCATGTCCGATGACTGTAATGCTGCTGGTGAGCAAGCTGCAAAAGTAGTTCTGATGTTTTTGGAGAGACTAAGTCACCCATCTGGTCCCAAAGTGTCAAACAAACAGCAGCGTAACAATGAGATGGTGGCACGCATTTTGCCGTACTTGACCTATGGAGAACAAGCAGCCATGGAAGTTCTTGTTGAGCACTTCAATCCCTATTTGAAGGATTGGACTGAATTTGATGAGTTACAAAAGAGGCACCAAGAAAATATGAAAGATGAAAGTTTAGCGAAAATAGCAGCTGAACAAAGGCTTGCAGTTGAGAACTTTGTCAAGGTTTCTGAATCAACCAAGATTAATTCATTTGGTGAGAGGCTAAAAGATATTATCATTGAAAAAGGCATTGCGAGAGTGGCAGTTCAACATTTAAAAGAAGTATTTGCTGTCTTTGAGAGAGGCGACTTTAAGACTTCCCCAGAATGGATGCACGGCTTAAAGTTGCCATCAGTACCTGTGATTCTATCCATGTTGAGAGGCCTTGCCAGGGGACATCTTGGTATCCAACAATGCATTGATGAAGGAGGAGTATTGCCTCTCCTCCATGCACTAGAAGGTGTTCCTGGAGAAAGTGAGATTGGTGCAAGGGCAGAAAATCTGTTGGATACTCTTGCAGACAAGGATAGCAAGGGGGAAGGCTTTCTTGCAGATAAGGTACACCAGCTAAGGCATGCAACCAGGGACGAGATGCGCCGTCGAGCCTTGAGGAGGAGGGAGGAGTTACTTCAGGATCTTGGTATGCGATGGGAACTTGCTTCTGATGGCGGTGAGCGAATATTGGTTTCACAACCTGTTATTGAAGGCTTAGAAGAAGTTGAAGAGGAGGAGGCTGGATTAGCATGCATGGTGTGCAGAGAAGGATATAGCTTAAGGCCCACAGATATGCTGGGGGCTTACTCTTTTAGTAAACGTGTAAATTTGCCTCTTGGAACCACAAGTCATGCTCGTGGGGAATGGGTGTATACAACTGTTAGTCATTTTAATATTATACATTTTCAGTGCCATCAAGAGGCCAAGCGAGCAGATGCTTCACTAAAGAACCCTAAGAAGGAATGGGAGGGAGCAGCCTTACGCAACAATGAAACTCTCTGTAACAGTCTTTTTCCTTTGAGGGGACCTTCTGTGCCTATTCCCCAATATGCACGCTGTGTTGATCAATTTTGGGATTGTTTGAATGCCCTTGGGCGAGCTGATGGGGGTCGTCTCCGATTGCTTACTTATGATATTGTGCTGATGCTGGCTCGTTTTGCAACTGGAGCATCATTCAGCACTGATAGCAAAGGTGGTGGAAGAGAGAGCAACTCCCGGCTACTTCCTTTCATGGTACAGATGGCCCACCATTTACTAGACCAAGGAGGTATGAGTCAGCGACGTAATATGGCAAAAGTTATAACCAGTTACCTCACTTCACCATCTCAATTGGATACAGCTACCTCTGGATCAAAGCCATCTACGCCTACTACACAAAGATATGCAGCAACAGAAGAAACAGTCCAGTATATGATGGTACATGCTGTGCTACTTCAATCTCTTGATGAGTGGGAGCAACATCGTCACACTTTCCTTCAAAGGGGGATATACCATGCATACATGCAATACAAGCATGGACGCTCAGCATTGGCAGCCCCTGCATCCTCACCTTCATCTTCTCGTGCTTCATCTTCGGATTTGGCACCAGTGGATTCGAAAAGTGATGATATCAGTAGAGAAGATGCAGAATTGAGTGAAACCAGTGAAAATTATTTTGCTATTGTTCAACCCATGCTTATATATACTGGCCTTGTAGAACAGCTGCAGCGTTTTCTAAAGTGGGTTAAGCCAACTGCCCGAAAAAGTAGGACTATCGAAAATGAAAGAGAGAATAGTGAAAAAATTGGAGATGACAGTGGCAGTGGTCCTGTAAGTATGGAACCCTGGGAAGTTACCATGAGGGAGAGGTTGCAGGATGTAAAGGGTATGTTGGGCTTTGCAAAGGAGTTGATGAATTGGCTGGAAGAGATGCAAAGTGCCAGTGATATGCAGGAAGCTTTTGATATAATGGGTGCACTTGGTGATGTTCTCTCTGGTGGGTTTTCTCGGTGTGAGGATTTTGTGCAGCATGCTATTGCCTCTGGCCACACTAGATGA___GGTTCATCCTGAAGGTATTTAAGGATTCTTGGTGTCTGGACTCTGGACTGTTGGGGGGGTGCTGAAAGCATTTCTATTATGGCATATTAGCATTTTTTTTCTCTTTTAAGTGCCACATTAGACGAGATGCTTCTTGAGGTTGCAATGATGTTGGGATGGTGGGGAATTTGTAATAGTAATTCTTCAGCCAGTGTAAAGTGAAGAGGGTGGTTTTTGAGTGCGGGACATTGCATGATATGTAATGGAGGTTTGCCTTTGTTGTTATGGTATTAACTTCCTAATTCAAGTTCCATTTCTTTCGTTAGGGAGTAGAAATAAGAATGTCTTGGTATTTGGTTCTGAGAACCTTCACTTATGTTTTTAAACCCTAGTAATGGATACCATGTTCAGATTTCCGGAAATGATGAGAACGAATCTTTTAGAACAATGAGCTTATAGGCTTTTTATGGTTCATTTGTACGGATATGTAGAGAAAAATGAACATTTCATATGTGGGGGTAAGTGGAGAGTGAACTCTCAGATATAAACCTACCAGTCATTGTACAACAATAAAAGGATCAACATGGACTAAGATAAATTGTGCATTCTTTAC

Fln Alignment:

Contig8403___SMVQHLRDDELKSNQEEXXXXXXXXXYCCKIRDNXXXXXXXXXXXXXXXXXXXXFSVDAVEPAEGILLIVESLVMEANESDIGITESVSTMSDDCNAAGEQAAKVVLMFLERLSHPSGPKVSNKQQRNNEMVARILPYLTYGEQAAMEVLVEHFNPYLKDWTEFDELQKRHQENMKDESLAKIAAEQRLAVENFVKVSESTKINSFGERLKDIIIEKGIARVAVQHLKEVFAVFERGDFKTSPEWMHGLKLPSVPVILSMLRGLARGHLGIQQCIDEGGVLPLLHALEGVPGESEIGARAENLLDTLADKDSKGEGFLADKVHQLRHATXXXXXXXXXXXXXXXXQDLGMRWELASDGGERILVSQPVIXXXXXXXXXXXXXXCMVCREGYSLRPTDMLGAYSFSKRVNLPLGTTSHARGEWVYTTVSHFNIIHFQCHQEAKRADASLKNPKKEWEGAALRNNETLCNSLFPLRGPSVPIPQYARCVDQFWDCXXXXXXXXXXXXXXXTYDIVLMLARFATGASFSTDSKGGGRESNSRLLPFMVQMAHHLLDQGGMSQRRNMAKVITSYL-TSPSQLD-----TATSGSKPSTPTTQRYAATEETVQYMMVHAVLLQSLDEWEQHRHTFLQRGIYHAYMQYKHGXXXXXXXXXXXXXXXXXXXXXXPVDSKSDDISREDAELSETSENYFAIVQPMLIYTGLVEQLQRFLKWVKPTARKSRTIENERENSEKIGDDSGSGPVSMEPWEVTMRERLQDVKGMLGFAKELMNWLEEMQSASDMQEAFDIMGALGDVLSGGFSRCEDFVQHAI
B9G2A8______________SMIQSLREDELRSNQEELGSVLNLLKYCCKIRENRCALLRLGALGLLLETARRAFSVDAMEPAEGILLIVESLTMEANESDISIAQSVFTTTTEETGAGEEAKKIVLMFLERLCPPDGAKKSNKQQRNEEMVARILPNLTYGEPAAMEALVLHFEPYLMNWSEFDQLQKQHEENPKDETLSKNASMQRSAVENFVRVSESLKTSSCGERLKEIILEKGITKAAVGHLRESFASAGQASFRTSAEWTVGLKLPSIPLILSMLKGLAKGDLPTQKCVDEEDILPLLHALEGVPGENEIGARAENLLDTLANKENNGDGFLAEKIQELRHATRDEMRRRALKKREMLLQGLGMRQEFASDGGRRIVVSQPIIEGLDDVEEEEDGLACMVCREGYTLRPTDMLGVYAFSKRVNLGATSSGSGRGDCVYTTVSHFNIIHYQCHQEAKRADAALKNPKKEWDGATLRNNETLCNCIFPLRGPSVPPGQYTRCLDQYWDQLNSLGRADGSRLRLLTYDIVLMLARFATGASFSTDCKGGGRESNSRFLPFMIQMASHLVDGSANQQRHVMAKAVTSYLSSSPSTPESPVRLSALSGARGGS------GSSEETVQFMMVNSLLSESYESWLQHRPAFLQRGIYHAYMQHKHGRSTLKLSADTSSSAV-----------RSDEGSSAD---SNDSKRLFAIVQPMLVYTGLIEQLQQFFK------------KGKSSGTQKVGEKDGSSGGNLEAWEIMMKEKLGNMKEMLGFSKDVLSWLEDMTSSEDLQEAFDVMGALPDVFSGGHTTCEDFVRAII

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
411		33		66	0.997452
589	25		75		0.996473
607	66		33		0.997452
610	66		33		0.997452
629		25		75	0.996473
790	11	88			0.923564
792			11	88	0.923564
793			11	88	0.923564
1069	11		88		0.923564
1228			85	14	0.993533
1230		83	16		0.994512
1231			16	83	0.994512
1289	20		80		0.995493
1427	20		80		0.995493
1485	16	83			0.994512
1487		83	16		0.994512
1488			16	83	0.994512
1489		83	16		0.994512
1638			14	85	0.993533
1706		87		12	0.992554
1797			88	11	0.923564
2380		8	86	4	0.999539
2578			50	50	1.0
2580			50	50	1.0
2650	14		85		0.993533
2653		14	85		0.993533
2676			85	14	0.993533
2704	85		14		0.993533
2729			85	14	0.993533
2732	14		85		0.993533
2759	16		83		0.994512
2763			83	16	0.994512
2788			20	80	0.995493
2841	20		80		0.995493
2887			16	83	0.994512
2933	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain