SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8393

Length: 1653 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene8393 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] emb\|CAB82992.1\| putative protein [Arabidopsis thaliana] gb\|AAT85726.1\| At5g02190 [Arabidopsis thaliana] gb\|AAU94418.1\| At5g02190 [Arabidopsis thaliana] dbj\|BAE99007.1\| hypothetical protein [Arabidops	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%

Source	Gene names
Sma3	At2g39710; At5g02190; GSVIVT00018450001; GSVIVT00021346001; LOC_Os03g16500; OJ1261C08.11; Os01g0844500; Os03g0271900; OsI_04407; OsI_10930; OsJ_04051; OsJ_10300; P0406G08.38; P0446B05.3; POPTRDRAFT_560783; POPTRDRAFT_765467; POPTRDRAFT_885676; RCOM_004062

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	programmed cell death	GO:0012501	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02190.1	EMB24, ATASP38, PCS1 Eukaryotic aspartyl protease family protein chr5:435322-436683 FORWARD LENGTH=453	46%
RefSeq	Arabidopsis thaliana	NP_195839.1	aspartyl protease family protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002309070.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK0

Fln msg: your sequence is longer than subject: 507 - 452

Fln protein: MVVSLVFLITREPCFDHSTPMAAISVFGPFLFLPSLLILLFLSSINGLSHLAPETTDPLNVSHFFNLHPNATSSHGEGHGFPLFSPTTSTAVTWPSFLINALSKTVKNQANANLSASKAAATARVTFRYSGPALMVEAMVGTPPQKQRMVLDTGSELSWLHCSKAPAFDHTLSSSYKAVPCKSPVCTKKTSDFALPASCDAKRLCHFTCAYADSTDVEGNLASDVVSLLPSNTRATALRIPGLVLGCASSALAGTPALMGLNRGALSFVSQLRTLNIPPKFSYCIADRFHSPDSPGLLYFGNSPFAKYLHYTQLFTIALPLPYFNRAAYSVRLESIKVGNKLLPIPKSVFLPDHTGAGQTMIDSGTQFTFLVGEAYNQLKREFARQNRGLLMKPMGENFVFQGAMDLCYQRPVRAPFSQLLSTVTLTFDSAEITLEGHQLLYQVPRRYAGNGVAKGRAIYCFTFGNSDLVPVEANIIGNHHQQNLWVEYDLQNSRIGFARARCRVN*

Protein Length: 508

Fln nts: CGTCGTGACCTTGG_-_ATGGTCGTGTCCTTGGTGTTTCTGATCACTCGAGAGCCCTGCTTTGATCATTCTACACCCATGGCTGCGATCTCAGTTTTCGGTCCTTTCCTCTTCCTGCCTTCTCTGCTCATATTGCTGTTCCTTTCTAGTATTAATGGATTAAGCCATCTGGCCCCTGAAACCACCGATCCATTGAATGTGAGTCACTTCTTCAATCTCCATCCAAATGCAACGTCCAGCCATGGCGAGGGCCATGGATTTCCACTTTTCTCCCCAACTACGTCCACTGCTGTTACTTGGCCTTCATTTCTCATAAATGCTCTCAGTAAAACAGTGAAGAACCAGGCCAACGCGAATCTTTCAGCGTCCAAGGCTGCAGCCACGGCTAGAGTGACATTTCGCTACAGCGGCCCTGCTCTCATGGTGGAAGCCATGGTGGGAACTCCTCCCCAGAAGCAACGCATGGTGTTGGACACAGGCAGCGAGCTCTCCTGGCTCCATTGTTCGAAAGCCCCTGCATTCGATCATACTCTCTCTTCTTCCTACAAGGCAGTACCCTGCAAATCCCCCGTCTGCACTAAAAAAACCTCGGACTTCGCCCTTCCAGCCAGCTGCGACGCCAAACGTCTCTGTCATTTCACGTGCGCATACGCTGATAGCACGGACGTGGAGGGAAACCTCGCCAGCGATGTGGTTAGCCTTCTGCCTTCGAACACAAGGGCAACTGCTCTCCGAATTCCCGGCTTGGTGCTCGGTTGCGCCTCCTCGGCCCTGGCCGGCACGCCGGCTTTGATGGGTCTCAACCGTGGTGCTTTATCCTTCGTTTCTCAACTGCGAACCCTCAATATTCCGCCCAAATTCTCATACTGTATTGCCGATCGTTTCCATTCTCCGGATTCTCCCGGACTCCTTTACTTCGGAAATTCTCCTTTTGCCAAATATTTGCACTACACGCAGCTGTTCACAATAGCACTTCCGCTACCGTATTTCAACAGAGCGGCCTACAGCGTTAGGTTAGAGAGCATCAAGGTTGGAAACAAGCTTCTCCCCATCCCCAAGTCCGTGTTCCTGCCAGACCACACGGGCGCAGGTCAGACCATGATCGACTCCGGAACTCAGTTCACATTTCTTGTGGGGGAGGCGTATAATCAGCTGAAGCGGGAGTTTGCGCGGCAGAACCGCGGGCTCCTAATGAAGCCCATGGGCGAAAATTTTGTGTTCCAGGGAGCTATGGATCTCTGCTACCAGCGACCCGTCCGTGCGCCATTTTCGCAGCTGCTGAGCACCGTGACGCTGACGTTTGATTCTGCAGAGATCACGCTAGAAGGTCATCAGCTCCTCTATCAAGTACCCAGAAGATATGCTGGAAATGGTGTTGCAAAGGGCCGGGCAATCTACTGTTTCACATTCGGAAATTCAGATTTGGTGCCGGTTGAGGCCAATATTATCGGCAATCACCATCAGCAGAATCTGTGGGTAGAATATGATCTTCAGAACTCTCGCATTGGCTTTGCGAGAGCTCGCTGCAGGGTCAACTGA___CCGTAAGATTCACTGCATACCAGTATTGTTGTATGACGTCATTTTGAATATACCATACTACTGTTTTCTCCAGATGTTTGTATTAATATGAATAGTTATTGGGTATTACAATAAGTTT

Fln Alignment:

Contig8393___VTFRYSGPALMVEAMVGTPPQKQRMVLDTGSELSWLHC-------SKAPAFDHTLSSSYKAVPCKSPVCTKKTSDFALPASCDAKRLCHFTCAYADSTDVEGNLASDVVSLLPSNTRATALRIPGLVLGCASSALAGT---PALMGLNRGALSFVSQLRTLNI-PPKFSYCIADRFHSPDSPGLLYFGNSPFAKYLHYTQLFTIALPLPYFNRAAYSVRLESIKVGNKLLPIPKSVFLPDHTGAGQTMIDSGTQFTFLVGEAYNQLKREFARQNRGLLMKPMGENFVFQGAMDLCYQRPVRAPFSQLLSTVTLTFD-SAEITLEGHQLLYQVPRRYAGNGVAKGRAIYCFTFGNSDLVPVEANIIGNHHQQNLWVEYDLQNSRIGFARARC
C0PSK0______________VPVRSGSGEYIIQVDFGTPKQSMYTLIDTGSDVAWIPCKQCQGCHSTAPIFDPAKSSSYKPFACDSQPCQE------ISGNCGGNSKCQFEVLYGDGTQVDGTLASDAITL-------GSQYLPNFSFGCAESLSEDTYSSPGLMGLGGGSLSLLTQAPTAELFGGTFSYCLPS---SSTSSGSLVLGKE--AAVSSSSLKFTTLIKDPSFP-TFYFVTLKAISVGNTRISVPAT----NIASGGGTIIDSGTTITYLVPSAYKDLRDAFRQQLSSLQPTPVED-------MDTCYDL---SSSSVDVPTITLHLDRNVDLVLPKENIL-----------ITQESGLSCLAFSSTD----SRSIIGNVQQQNWRIVFDVPNSQVGFAQEQC

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1048		87		12	0.992554
1054	12		87		0.992554
1263			83	16	0.994512
1294	85		14		0.993533
1317			12	87	0.992554
1318		12		87	0.992554
1348	87		12		0.992554
1405		15		85	1.0
1515	42			57	1.0
1543	83		16		1.0
1572		86	13		0.999973
1573	13		86		0.999973
1581	14		85		0.999981
1586		14		85	0.999981
1588		14	85		0.999981
1589	85		14		0.999981
1591		14		85	0.999981
1607		80	20		0.999996
1614		10	90		0.90298
1616	10			90	0.90298
1617		80	20		0.999996
1620	75			25	1.0
1621	57	28	14		1.0
1622	85		14		0.993533
1625	60		40		1.0
1626	20	80			0.995493
1627	40	60			1.0
1628	66		33		0.997452
1637		33	33	33	0.997753
1638		33	33	33	0.997753
1641		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain