SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8358

Length: 1672 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8358

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Formin-like protein 1; AltName: Full=OsFH1; Flags: Precursor dbj\|BAB86073.1\| putative FH protein NFH2 [Oryza sativa Japonica Group] dbj\|BAC06896.1\| putative FH protein NFH2 [Oryza sativa Japonica Group]	-	-	0.0	57%
FL-Next	sp=Formin-like protein 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	60%
Sma3	Actin binding protein, putative	-	-	1.521e-09	-

Source	Gene names
Sma3	AFH1; At1g24150; At1g70140; At2g43800; At3g05470; At3g25500; At4g15200/At4g15190; At5g48360; At5g54650; At5g67470; B1103G11.53; B1160F02.7; Dl3645c/Dl3640c; F18O19.9; F20P5.14; F22F7.8; F3I6.8; FCAALL.218; FH1; FH10; FH11; FH13; FH14; FH15; FH16; FH18; FH

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell-cell junction	GO:0005911	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	profilin binding	GO:0005522	Molecular Function	-
Sma3	actin filament binding	GO:0051015	Molecular Function	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	cell tip growth	GO:0009932	Biological Process	-
Sma3	cellular component organization	GO:0016043	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-
Sma3	actin filament polymerization	GO:0030041	Biological Process	-
Sma3	actin nucleation	GO:0045010	Biological Process	-
Sma3	vesicle docking	GO:0048278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Exocyst complex component Sec10	IPR009976	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67470.1	ATFH6, FH6 formin homolog 6 chr5:26926835-26930212 FORWARD LENGTH=899	56%
RefSeq	Arabidopsis thaliana	NP_201548.1	formin-like protein 6 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002303027.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8S0F0

Fln msg: your sequence is shorter than subject: 357 - 960

Fln protein: LAKMAPSKEEEIRLKEYNGDISKLGPAERFLKGLLDIPFAFKRVDAMLYRANFKEEVMYVRKSFKTLEAASEELRSSRLFLKLLEAVLKTGNRMNVGTIRGDAQAFKLDTLLKLVDVKGTDGKTTLLHFVVQEIIKAEGARVASTSEQPLTNSTSDNINGKFCPQGAEDKSQNDREEEYKKLGLQVVAGLSTELSNVKKAAGMDSDGLSNSVSNLARGFGKLRDILQMIGGGKANESSTQGNFFKSMLSFLQEAEEDIARIQSEENRAFSLVRETTEYFHGDAAKEEGRPLRFFVVVKDFLGVLDQVCKEIGRTRTRMAQSSPRTPQVVVHPISMPLFPKFQQRQPDSSDDESSSP*

Protein Length: 358

Fln nts: CTCTAGCCAAGATGGCACCATCAAAAGAGGAGGAAATTAGACTGAAAGAGTATAATGGGGATATTTCTAAACTTGGTCCTGCAGAGCGATTTCTTAAGGGATTGTTGGATATTCCTTTTGCCTTTAAGCGAGTTGATGCCATGCTGTACAGAGCCAATTTTAAGGAGGAGGTTATGTACGTAAGGAAGTCCTTTAAGACGTTAGAGGCAGCAAGTGAAGAATTAAGATCCAGTCGTCTATTCTTGAAGTTGTTGGAAGCTGTTCTAAAAACAGGCAATCGTATGAATGTTGGCACCATCCGTGGGGATGCTCAAGCTTTTAAGCTTGATACACTTCTTAAACTAGTAGACGTCAAAGGCACAGATGGGAAAACAACTTTATTGCATTTTGTTGTCCAGGAGATCATAAAAGCTGAAGGTGCACGTGTTGCAAGCACTAGCGAACAACCTCTTACAAATTCTACATCTGACAACATAAATGGTAAATTCTGTCCTCAAGGTGCAGAAGACAAGAGCCAGAATGACAGAGAAGAAGAGTACAAAAAACTTGGGTTGCAGGTTGTTGCTGGCTTGAGCACAGAATTGTCTAATGTAAAGAAGGCAGCTGGAATGGATTCAGATGGGTTGTCCAACTCTGTGTCAAACCTTGCAAGAGGCTTTGGCAAGTTAAGAGATATTTTGCAAATGATAGGGGGTGGGAAAGCAAATGAGAGTTCTACACAGGGAAACTTTTTTAAGTCCATGTTATCATTTCTGCAAGAAGCTGAGGAGGATATAGCTCGGATACAAAGTGAAGAAAACAGAGCTTTCTCTCTTGTAAGGGAAACTACGGAATATTTTCATGGGGATGCAGCTAAGGAAGAAGGCCGGCCTCTCCGTTTTTTTGTTGTTGTGAAGGACTTCTTAGGTGTGCTAGATCAAGTATGTAAGGAAATTGGAAGAACACGCACAAGGATGGCTCAAAGCTCTCCTCGAACTCCCCAAGTTGTGGTCCATCCAATTTCTATGCCACTTTTTCCGAAATTTCAACAAAGACAACCAGACAGTTCTGATGATGAAAGCTCATCTCCATGA___CTTTTGGTACGAAGGTTGTTTGTCTTGGGCAAGAGGTGGTTTGCGCTGTGAACTCTTCCTCTTTTTTTTGTGGGAGGGATCTATTATTTTGTGAAGATCAAAGAGTACAGCAAATTTACACTCAAAAGTCCCAGCAACAAATCAATAGTCCATGGTCTTTTGTTGGTTTCAGTTACTCAACAGCTTCGGTGTAACATATCTTCTAGGAATTATAAGGTAATTTAGGTATTAATTTGTGGCATTTTGCTGCATGTAAAAATTCTGTCAATTTCAGAATTCTTTCAGCTATCAATACAAAAGGAAGCCTGATGCAGGAATTCGTTATAAACTACTCTTTGAAATCTGTAACTGTCTGTGTGGGGATGAAATTTCGTCCTTGAGATGATCATGTAATTCACTTAATTTCATTCTATTATGAAAAGTTAAATGCGGGTTCAATTAGTGACAACAAAATTGGATTTCCAGAGGAATATTATTTTCTTCAGACTCTAGAGTATGTCGTTTCCAAAGTGATGGTATACTTAAGCTACATCCTCCATCATTGTGCTGTTGTTTGTTACACTTGATAACCCTTTCTACCATTTTCCAAGCATTTTCGC

Fln Alignment:

Contig8358___LAKMAPSKEEEIRLKEYNGDIS--KLGPAERFLKGLLDIPFAFKRVDAMLYRANFKEEVMYVRKSFKTLEAASEELRSSRLFLKLLEAVLKTGNRMNVGTIRGDAQAFXXXXXXXXXXXXGTDGKTTLLHFVVQEIIKAEGARVASTSEQPLTNSTSDNINGKFCPQGAEDKSQNDREEEYKKLGLQVVAGLSTELSNVKKAAGMDSDGLSNSVSNLARGFGKLRDILQMIGGGKANESSTQGNFFKSMLSFLQEAEEDIARIQSEENRAFSLVRETTEYFHGDAAKEEGRPLRFFVVVKDFLGVLDQVCKEIGRTRTRMAQSSPRTPQVVVHPISMPLFPK
Q8S0F0______________LLKMAPTKEEEIKLREFKEETSPIKLGPAEKFLKAVLDIPFAFKRVDAMLYIANFESEVNYLKKSFETLETACDELRNSRLFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGTDGKTTLLHFVVQEIIRTEGSHL-SASNQSTPRTQANPLRD---------------ELECKKLGLQVVAGLGNELSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSREDAWR--FHDSMQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain