SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8353

Length: 1312 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8353

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COG0702: Predicted nucleoside-diphosphate-sugar epimerases (ISS) [Ostreococcus tauri] emb\|CAL51450.1\| COG0702: Predicted nucleoside-diphosphate-sugar epimerases (ISS) [Ostreococcus tauri]	-	-	6.0e-31	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-
Sma3	Regulator of K+ conductance, N-terminal	IPR003148	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRZ2

Fln msg:

Fln protein: MANLTVARLPATGELRILAQCDKTRLHNSFQGNWADGCRLSKNKASHMTEIRIQLRQSVRLKVGWTKQHMQKVRCQSEDTVTIDNSTVLVAGGGGVGMEVVRKLAKTGSWVTVFQRSEKFRKEIEDLGAMLAIGDVLDTSSMMKAFSSTSFDAVVCTVGGGTKEPKVDKDGPINLINASKAAGVKRFILVSSIGVGNSVQAIDKKTLETLRAVLEAKEVAEEALKSSGLVYTIIRPGGLLSTPPTGNGILIEDPSIAGLISRNDVASLILQILFDKEAEMKTFSAIDSEKRFPPPTTDQKENADK*

Protein Length: 307

Fln nts: ATGGGGGACTTCCATTTCACGACGCAAAAGGACGTCAACATGGTTAAGAGCGTCTCGTTATCCATTTGAGGGGCATGCGTATGGCAAATGAAGAAATAGGTTTCAAATCCCCGCATTTTTCTCCATTCACTTCTCCAAAATACA_-_ATGGCCAATCTTACTGTGGCTCGACTTCCAGCAACTGGAGAGCTAAGAATATTGGCACAATGTGATAAAACACGTCTTCACAATTCTTTTCAAGGGAATTGGGCTGATGGGTGTAGGCTGTCCAAAAATAAAGCTTCTCACATGACTGAAATCAGAATTCAATTGCGACAATCTGTCCGTTTAAAGGTGGGCTGGACAAAGCAACACATGCAGAAAGTTAGATGCCAATCTGAGGATACAGTCACAATTGACAACTCCACAGTGCTCGTTGCTGGTGGAGGTGGGGTGGGAATGGAAGTGGTCCGCAAGTTGGCAAAGACAGGTTCTTGGGTTACAGTTTTTCAACGAAGTGAAAAATTTCGGAAGGAGATTGAAGATTTGGGAGCTATGCTTGCCATTGGTGATGTTTTGGACACTTCGAGCATGATGAAGGCTTTCAGTTCAACTTCATTTGACGCAGTGGTCTGTACAGTTGGTGGAGGGACGAAGGAACCAAAAGTAGACAAGGATGGACCTATTAATCTCATAAATGCTTCAAAAGCTGCAGGAGTCAAAAGGTTTATCTTGGTATCGAGCATTGGGGTTGGTAACAGTGTGCAGGCTATTGACAAAAAGACATTAGAAACTTTAAGAGCTGTTTTGGAAGCTAAGGAGGTTGCAGAAGAAGCCTTAAAATCAAGTGGATTGGTTTACACAATAATCCGACCTGGAGGCTTGCTGAGTACTCCTCCAACGGGGAATGGTATATTAATAGAGGATCCAAGTATAGCTGGACTGATTTCAAGAAATGATGTAGCTTCCTTGATATTACAAATTCTATTTGATAAAGAGGCTGAAATGAAGACTTTCTCTGCAATTGACTCTGAAAAGCGGTTTCCACCACCAACAACAGATCAAAAGGAAAATGCAGATAAATGA___CATGTCGAGAATAAATGCATTCACGGTAAAAGTTGGGTTTTCACCACCAACTGCACATTAAAAGGAAAATGCAGAGAAATGACATGTCCAGTATAAATGCATTCACATAAAAGTGGGGAAAAATATGGAGATATATGACATGTCAAGAATGAAAGCAATCTTGAGGGGAGGAAATTTCATCTCACTTTTTATAATTTAGTTTCATTATTCTCTCACTCAGTTAAGTTTAATAAGTTTTTGTTAATGTTTA

Fln Alignment:

Contig8353___MANLTVARLPATGELRILAQCDKTRLHNSFQGNWADGCRLSKNKASHMTEIRIQLRQSVRLKVGWTKQHMQKVRCQSEDTVTIDNSTXXXXXXXXXXXXXXRKLAKTGSWVTVFQRSEKFRKEIEDLGAMLAIGDVLDTSSMMKAFSSTSFDAVVCTVGGGTKEPKVDKDGPINLINASKAAGVKRFILVSSIGVGNSVQAIDKKTLETLRXXXXXXXXXXXXXXSSGLVYTIIRPGGLLSTPPTGNGILIEDPSIAGLISRNDVASLILQILFDKEAEMKTFSAIDSEKRFPPPTTDQKENADK
A9NRZ2______________MANLTVARFPAAGELKILAQCDQTRLHYSFQGHWADGCRLSKNKTSHMTKIRIRLQQSICLNVGWTKQHMWKARCQSEDTVKIDNSTVLVAGGGGVGMEVARKLAKTGSWVTVFQRSEKFRKEIEDLGAMLAIGDVLDSSSMTKAFGSNSFDAVVCTVGGGTKEPKVDKDGPINLINASKTAGVKRFILVSSIGVGNSVQAIDKKTLETLRAVLEAKEVAEEALKSSGLVYTIIRPGGLLSTPPTGNGILIEDPSIAGLISRSDVASLILQILFDKEAEMKTFSAIDSEKRFPPPTTVGKKDADK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
119	12			87	0.992554
120	12			87	0.992554
125	87		12		0.992554
177	62		37		1.0
682	83			16	0.999991
683	81			18	0.999994
755	80	20			0.995493
757	80			20	0.995493
758	75			25	0.996473
780	16			83	0.994512
1028		85		14	0.999981
1082			33	66	1.0
1093	85		14		0.993533
1130	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain