SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8349

Length: 1236 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8349

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription initiation factor TFIID subunit D9 [Arabidopsis thaliana] gb\|AAF65405.1\|AF238326_1 putative TATA binding protein associated factor 24kDa subunit [Arabidopsis thaliana] gb\|AAK43956.1\|AF370141_1 unknown protein [Arabidopsis thaliana] gb\|AAK937	-	-	4.0e-38	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%
Sma3	Transcription initiation factor TFIID subunit 11	-	-	2.166e-09	-

Source	Gene names
Sma3	AT4g20280; At4g20280; B1144G04.51; F1C12.195; GSVIVT00000980001; Os01g0680400; OsI_03273; OsJ_03014; P0019E03.6; PHYPADRAFT_147903; POPTRDRAFT_554634; POPTRDRAFT_838144; RCOM_0096320; T20H2.22; TAF11;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TAFII28-like protein	IPR006809	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299376.1	predicted protein [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TQZ4

Fln msg:

Fln protein: MLVKMSIDPFEIATNDYDTPPDSPHGIEETTDAGNEEDTLKEDIKTNNKGGTSPTATPINSDAEDDEVVSQPPLLQNATASEEPPKSKEEEEENMDVELGKYQSGDPDKIEKFTTVLAQLTPDQMNRYESFRRAGFQKANMRRVLQSIAGCPISLPMTIVMSGVAKMFVGELVETGRMVMTERNERGPIRPCHMREAYRRLKLEGKVPTRSRPRRFY*

Protein Length: 219

Fln nts: TATTTATGAAATTCGGTGAAGAGCCCGGGAGAACCGAACGCCACCGATATGAATAGGAGGTCGTCGTGTACCTTGGCTGTCACTCAGGTTATGACGAAGGAGAATAAGGCGGCCCCAAAGCTGGCTTTCACAGTGTTTTAAAGATAATTTGGAAAGAATAAAAAGTGACAAGGTTGTGCCAAGCTTTTGATTGGTTTAGTGTGTCGATCATATTGATTTTCTTGGAGCAATTGCATCAAAAATATTTT_-_ATGTTAGTGAAGATGAGCATAGACCCATTTGAGATTGCAACAAATGATTATGACACACCGCCAGATTCTCCGCATGGCATAGAGGAAACGACAGATGCAGGGAATGAAGAAGACACTCTCAAGGAGGACATTAAAACTAATAACAAGGGGGGCACCTCCCCTACTGCTACCCCTATCAACAGCGATGCAGAGGACGATGAAGTGGTTTCTCAACCGCCTCTGCTACAAAATGCCACTGCTTCAGAAGAACCCCCCAAATCTAAAGAAGAGGAGGAGGAAAACATGGATGTCGAACTCGGCAAATACCAGTCAGGGGATCCCGATAAAATTGAGAAATTCACAACCGTATTGGCACAACTAACACCTGATCAGATGAACAGGTATGAATCCTTCCGGCGAGCTGGCTTTCAGAAGGCAAACATGAGGAGGGTATTGCAGAGTATAGCGGGGTGCCCTATCTCCCTTCCCATGACCATAGTCATGTCGGGAGTAGCCAAGATGTTTGTGGGGGAATTGGTGGAAACGGGGCGGATGGTGATGACGGAGAGGAATGAAAGAGGTCCCATTCGTCCTTGTCACATGCGAGAGGCCTATCGCCGCCTTAAGTTGGAAGGCAAGGTGCCAACGCGATCAAGGCCTCGCCGCTTTTACTAG___TTTCAAATGAAATGCAATTTATTTATGTTGGTTATTATGGTGGTGCTGTGAATCGATTTTGAAGAAAGAAATATGTAATATCTGCTAAAAATTTAGAGGTCAAAATTTTCTGTTAAAGAGGAATGCAGCTATAAAATTGTGACATTGCCAATAAAAGTGCCACAGTGATCAAGGCCTTGCCTATTTTACTAGCTTCAAATGAAATGTTTGTTATGATGGTGGTGGGAATTTTTATTATGAAAACAAATCCTGTAAAAGTTCAGAGGCAAAATACACTGTTAAGAAGGAAATGCACTGTAAAATCAGGGCATTGTTAATAATACCTCCTGCTCCT

Fln Alignment:

Contig8349___VKMSIDPFEIATNDYDTPPDSPHGIEETTDAGNEEDTLKEDIKTNNKGGTSPTATPINSDAEDDEVVSQPPLLQNATAXXXXXXXXXXXXXNMDVELGKYQ-SGDPDKIEKFTTVLAQLTPDQMNRYESFRRAGFQKANMRRVLQSIAGCP-ISLPMTIVMSGVAKMFVGELVETGRMVMTERNERGPIRPCHMREAYRRLKLEGKVPTRSRPRRF
D7TQZ4______________MKQSKDPFEVAFEE-SSPPDSP--VEEIV-GGQIED--EDDANVNVHPTSTPSAAPSSG-------TTVPPTAKSKDEDEEEEEE------NMDVELGKLPTSGDPHKMAKMQAILSQFTEEQMSRYESFRRSGFQKANMKKLLVSITGSQKISAPMTIVASGIAKMFVGELVETARMVMTERKETGPIRPCHIREAYRRLKLEGKVPRRSVSRLF

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
802		40		60	1.0
996	28			71	1.0
999	71			28	1.0
1031	83			16	0.994512
1044		16		83	0.994512
1059	83	16			0.994512
1067	40	60			1.0
1077			83	16	0.994512
1091		22		77	0.999999
1102	88			11	0.923564
1180	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain