SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8345

Length: 1354 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8345

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylalanine ammonia-lyase (Fragment) n=3 Tax=rosids RepID=PALY_VITVI	-	-	69%
FL-Next	sp=Phenylalanine ammonia-lyase; Pinus massoniana.	-	-	67%
Sma3	Phenylalanine ammonia-lyase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phenylalanine ammonia-lyase.	EC:4.3.1.24	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylalanine metabolism	00360		0.0	%
Sma3	Nitrogen metabolism	00910		0.0	%
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of phenylpropanoids	01061		0.0	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		0.0	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		0.0	%
Sma3	Biosynthesis of plant hormones	01070		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Transferred entry: 4.3.1.23, 4.3.1.24 and 4.3.1.25.	EC:4.3.1.5	-	3.927e-06	-

Source	Gene names
Sma3	AT3G53260; At2g37040; At3g10340; At3g53260; At5g04230; B1215B07.42; DcPAL4; Dcpal1; Espal1; Espal2; Espal3; Espal4; F14P13.6; F21E1_150; GSVIVT00013922001; GSVIVT00013927001; GSVIVT00013928001; GSVIVT00013930001; GSVIVT00013939001; GSVIVT00013943001; GSVI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ammonia ligase activity	GO:0016211	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	ammonia-lyase activity	GO:0016841	Molecular Function	-
Sma3	phenylalanine ammonia-lyase activity	GO:0045548	Molecular Function	-
Sma3	L-phenylalanine catabolic process	GO:0006559	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aromatic amino acid lyase	IPR001106	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Phenylalanine ammonia-lyase	IPR005922	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10340.1	PAL4 phenylalanine ammonia-lyase 4 chr3:3204260-3207809 FORWARD LENGTH=707	67%
RefSeq	Arabidopsis thaliana	NP_187645.1	phenylalanine ammonia-lyase 4 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002315309.1	phenylalanine amonnia lyase, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C5MR78

Fln msg: your sequence is shorter than subject: 398 - 718

Fln protein: RQRSVEHLLDGSSYMKAAAAKHHEADALSKPKQDRYALRTAPQWLGPQVEVIRASTHMVQREINSVNDNPLIDAARNKALHGGNFQGTPVGVAMDNARLALAAVGKLMFAQMSELVNDFYNNGLPSNLSGGPDPSLDYGFKGAEIAMAAYTSELQFLANPVTTHVQSAEQHNQDVNSLGLISARMTAQAVEILKLMIWTYLVALCQAIDLRHLEENLHAAVRQSVGQACKKTLVVGPGGELLPSRFCEKDLLKAIDREPVFSYIDNPCSATSVLTTKLRQVLFEHAIEKTTDNDASILTRIPAFEEELKARIVAEVQETRDAFEKGAALVPNRIKDCRSYPLYEFVRVELGTSLLVGTNSRSPGEDFDKVFVAINEGKAVEPLFKCLERWDGAPIPI*

Protein Length: 399

Fln nts: GCGGCAGCGATCAGTGGAGCACCTCCTAGATGGCAGCTCATACATGAAGGCTGCCGCCGCGAAGCACCACGAGGCAGACGCGTTGTCAAAGCCCAAGCAGGACCGCTACGCTCTGCGCACCGCCCCGCAGTGGCTCGGCCCGCAGGTGGAGGTGATACGTGCCTCGACTCACATGGTGCAGCGCGAGATCAACTCCGTCAACGACAACCCCCTCATCGACGCCGCCCGCAACAAGGCGCTCCACGGTGGCAACTTCCAGGGGACACCTGTCGGCGTCGCTATGGATAACGCACGCCTGGCTCTCGCTGCGGTTGGTAAGCTCATGTTTGCACAGATGTCGGAGCTCGTCAATGATTTCTACAACAACGGTCTCCCATCGAATCTTAGCGGTGGGCCCGACCCCAGCCTGGACTACGGTTTCAAGGGTGCCGAGATCGCCATGGCCGCTTATACCTCAGAGCTTCAATTCCTTGCCAATCCGGTGACGACACATGTCCAGAGCGCTGAGCAACACAACCAAGACGTCAACTCCCTCGGCCTGATCTCCGCCCGCATGACGGCCCAGGCCGTCGAGATTTTGAAGCTCATGATTTGGACGTACCTCGTGGCGCTCTGCCAGGCCATCGACCTACGCCACCTGGAAGAGAATCTACATGCCGCAGTCCGACAATCCGTAGGACAGGCCTGCAAGAAAACCCTTGTTGTGGGACCCGGAGGAGAGCTGCTGCCTTCTCGCTTTTGCGAGAAGGACCTCCTCAAGGCCATCGATCGGGAACCGGTGTTCTCCTACATTGACAACCCCTGCAGCGCTACCTCCGTTCTGACCACGAAGCTCCGGCAGGTGCTCTTCGAACACGCGATCGAAAAGACAACCGATAACGACGCTTCGATCCTTACTAGAATCCCGGCATTCGAAGAGGAGCTCAAAGCGCGCATCGTTGCCGAGGTTCAGGAGACGAGGGACGCCTTCGAAAAAGGCGCTGCCCTTGTTCCCAACAGAATCAAGGACTGCCGCTCCTATCCGCTGTACGAGTTCGTGAGAGTGGAGCTGGGGACTTCGCTACTGGTGGGCACCAATAGCCGCTCTCCCGGCGAGGACTTCGACAAGGTGTTCGTCGCTATCAACGAAGGCAAGGCGGTGGAACCGTTGTTCAAGTGCCTTGAGCGATGGGACGGAGCCCCCATTCCCATTTGA___ATTTAATTAAAAGCTAATAACGCAATGTTGTTTTTGGCTGCGTGAGGCCACCCTTATTTCTAAGGAAAGTGTATTGTATTTATATCCTATAAACAAATTAAATTAAAAAGATTAATTAAAATGGTTTCTAATTTAGCAGAGATTTTTAATAATCATAAC

Fln Alignment:

Contig8345___VEHLLDGSSYMXXXXXXXXXXXXLSKPKQDRYALRTAPQWLGPQVEVIRASTHMVQREINSVNDNPLIDAARNKALHGGNFQGTPVGVAMDNARLALAAVGKLMFAQMSELVNDFYNNGLPSNLSGGPDPSLDYGFKGAEIAMAAYTSELQFLANPVTTHVQSAEQHNQDVNSLGLISARMTAQAVEILKLMIWTYLVALCQAIDLRHLEENLHAAVRQSVGQACKKTLVVGPGGELLPSRFCEKDLLKAIDREPVFSYIDNPCSATSVLTTKLRQVLFEHAI---EKTTDNDASILTRIPAFEEELKARIVAEVQETRDAFEKGAALVPNRIKDCRSYPLYEFVRVELGTSLLVGTNSRSPGEDFDKVFVAINEGKAVEPLFKCLERWDGAPIP
C5MR78______________MEYVLDGSSYMKHAAKLHEMNP-LQKPKQDRYALRTSPQWLGPQVEIIRSATHMIEREINSVNDNPVIDVARDKALHGGNFQGTPIGVSMDNLRLSISAIGKLMFAQFSELVNDYYNGGLPSNLSGGPNPSLDYGLKGAEIAMASYTSELLYLANPVTSHVQSAEQHNQDVNSLGLVSARKSAEAIDILKLMLSTYLTALCQAVDLRHLEENMLATVKQIVSQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPLFEAELKAQLELQVSLARESYDKGTSPLPNRIQECRSYPLYEFVRNQLGTKLLSGTRTTSPGEVIEVVYDAISEDKVIVPLFKCLDGWKGTPGP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
821		80	20		0.995493
1023		50		50	1.0
1032	25		75		0.996473
1066		66		33	1.0
1068	66		33		1.0
1069		50		50	1.0
1107		50		50	1.0
1122		44		55	1.0
1140			87	12	0.992554
1167		20		80	0.995493
1171	16	83			0.994512
1172	16		83		0.994512
1177	16		83		0.994512
1179		80		20	0.995493
1182	80	20			0.995493
1286		70	30		1.0
1317		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain