SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8342

Length: 1604 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8342

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	embryo sac development arrest 7 protein [Arabidopsis thaliana] emb\|CAB72169.1\| putative protein [Arabidopsis thaliana] gb\|AAL47467.1\| AT3g56990/F24I3_70 [Arabidopsis thaliana] gb\|AEE79596.1\| embryo sac development arrest 7 protein [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	67%

Source	Gene names
Sma3	CHLREDRAFT_119598; F24I3.70; GSVIVT00000661001; MICPUCDRAFT_60988; MICPUN_104488; OSTLU_89076; Os06g0128400; OsI_21466; OsJ_19974; Ot15g00740; P0538C01.6; PHYPADRAFT_138880; POPTRDRAFT_576176; POPTRDRAFT_761993; RCOM_0636090; RCOM_1863280; VITISV_034312;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NUC153	IPR012580	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56990.1	EDA7 embryo sac development arrest 7 chr3:21088358-21091976 REVERSE LENGTH=711	59%
RefSeq	Arabidopsis thaliana	NP_191258.2	embryo sac development arrest 7 protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002323251.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TIN5

Fln msg: Distance to subject end: 191 aas, your sequence is shorter than subject: 471 - 701

Fln protein: MSSQGGSMKVTAINGVKMYSVSGQRSFPTWLTPKKLKALRNDSEYMRRIDLIQDLNFNTAATRIKSTPDGEYIIVSGTYPPQVKVYELRELSLKFERHLVAEIIEFQVLADDYSKLAFLCADRSVCLHAKYGSHHSLRIPRMGRDIVYDRWSCDLICAASSPDLYRINLECFDLREKASVGRIDVATHTGDTDQEVTAIRFEETESFQMAVGTSSGQVLIYDLRSSRPFRVKDHMYGSPILDIKWHSTLNASRPRMITADNRVVRIWDPETGEGMTSIEPAAGSINDVCVIRNSGLMFMALESTQIPSYFIPSLGPAPKWCSYLENLTEELEEGAQTTIYDDFKFVTKEDLERLNLTNLIGTNLLRAYMHGFFIDYRLYLKAKSMADPFAYEAYRQQRIQEKIEAGRAARITIKRKLPKVNQDLAARLLATENDEDWEASVKDHASKKKKKTGTGSELLKDERFAAMFNDI

Protein Length: 472

Fln nts: GTCTAATTCAAATAGTGATCAAGAAGTTAGACGGTGAAAATTGCAGCTGCACTATTGGGACGAAGGATTTAACAGAGACCTTAATAATCTCAATGTATGCTGCAACTCAGCGGATCACTTCGGCCTAATCGTCAGTATCTGTGAGAGACCATCTCCATTACAAAAATTCCGAAATTTTAATTGCCACAAAG_-_ATGTCGAGTCAGGGGGGAAGCATGAAGGTGACTGCCATCAATGGCGTGAAGATGTATTCTGTGTCCGGGCAGCGTTCGTTTCCCACATGGCTTACGCCTAAGAAATTGAAAGCTCTGCGCAACGACAGTGAGTACATGCGAAGGATAGACTTGATTCAGGACCTGAACTTTAATACTGCAGCTACTCGCATCAAGTCAACACCTGATGGAGAATACATTATTGTATCAGGTACCTATCCACCTCAAGTAAAGGTATATGAATTAAGAGAGTTGTCATTGAAGTTTGAACGTCATTTGGTGGCAGAAATTATTGAATTTCAGGTATTGGCAGACGACTACTCAAAATTAGCCTTTCTCTGTGCTGATCGTTCTGTTTGCCTTCATGCTAAATATGGGAGTCACCACAGCCTTCGAATTCCAAGGATGGGAAGGGATATTGTCTATGATCGTTGGTCATGTGATTTGATTTGTGCTGCTTCTTCACCAGATTTATATCGCATCAACTTAGAATGTTTTGATTTGAGAGAAAAAGCTTCGGTAGGAAGAATTGATGTAGCTACACATACAGGAGATACTGATCAGGAGGTCACTGCGATACGATTCGAGGAAACTGAAAGCTTTCAGATGGCAGTTGGAACTAGTTCTGGACAGGTGCTAATATATGATCTGCGTTCTTCAAGGCCTTTTCGAGTTAAAGATCACATGTATGGTAGCCCCATTTTGGATATCAAGTGGCATTCAACTCTAAATGCTTCAAGGCCGAGAATGATCACTGCTGATAATCGGGTAGTCAGAATTTGGGATCCAGAGACGGGAGAAGGTATGACTAGTATTGAACCAGCAGCTGGAAGTATTAATGATGTTTGTGTAATTCGCAACAGTGGACTAATGTTCATGGCACTGGAGTCCACTCAAATTCCTTCCTATTTTATCCCTTCTTTGGGACCTGCTCCAAAGTGGTGTTCTTACCTTGAGAACTTGACGGAAGAGCTTGAGGAAGGGGCACAGACTACCATCTACGATGATTTCAAATTTGTCACAAAAGAAGACCTTGAACGCTTGAACTTGACAAATCTGATTGGCACCAACCTTTTAAGAGCCTATATGCATGGATTCTTCATAGATTATCGTCTTTACCTGAAGGCAAAATCCATGGCAGATCCATTTGCTTATGAAGCTTATAGGCAACAGCGCATACAAGAAAAGATTGAGGCTGGCCGTGCTGCTCGCATAACGATTAAGAGGAAGCTACCTAAAGTAAATCAGGACTTAGCTGCTCGTCTTTTGGCAACTGAGAATGATGAAGATTGGGAAGCTTCTGTTAAAGACCATGCATCAAAGAAAAAGAAAAAGACTGGAACTGGGAGTGAATTGTTGAAAGATGAGCGTTTTGCAGCAATGTTTAATGACATT

Fln Alignment:

Contig8342___MSSQGGSMKVTAINGVKMYSVSG-QRSFPTWLTPKKLKALRNDSEYMRRIDLIQDLNFNTAATRIKSTPDGEYIIVSGTYPPQVKVYELRELSLKFERHLVAEIIEFQVLADDYSKLAFLCADRSVCLHAKYGSHHSLRIPRMGRDIVYDRWSCDLICAASSPDLYRINLE-------------------------------------CFDLREKASVGRIDVATHTGDTDQEVTAIRFEETESFQMAVGTSSGQVLIYDLRSSRPFRVKDHMYGSPILDIKWHSTLNASRPRMITADNRVVRIWDPETGEGMTSIEPAAGSINDVCVIRNSGLMFMALESTQIPSYFIPSLGPAPKWCSYLENLTEELEEGAQTTIYDDFKFVTKEDLERXXXXXXXXXXXXRAYMHGFFIDYRLYLKAKSMADPFAYEAYRQQRIQEKIEAGRAARITIKRKLPKVNQDLAARLLATE--NDEDWEASVKDHAXXXXXXXXXXXELLKDERFAAMFND
D7TIN5______________MAYQGGNLRSTSINGVKTYTISSHQRSLATWLPPKKLRALRKNNDYLQRVDLIQDLRFETATTKIKATPDGEYLIASGIYPPQVKVYELRELSLKFERHLVSEIIDFQILGDDYSKLAFLCADRTVCLHAKYGSHYSLRIPRMGRDIAYDYWSCDLLCAASSPDLYRINLEQGRFLSSLNTQSPALNVVSRSNLHGLVACGGEDGAVECFDMRTRSSVGRINAVAAAGDVDQEVTALEFDGDAGFLMAVGSSSGKVLIYDLRSSCPIRIKDHMYGSPILDIKWHRTLNSERPKLITTDNHIVRIWDPETGDGMTSIEPT-GTINDICVFSDSGLMLLALDGSQIPSYFIPALGPAPKWCSYLENLTEELEEGAQTTIYDDFKFLTKEDLERLNLTNLIGTNLLRAYMHGFFIDYRLYKKAQSLADPFAYDNYIEQRKKEKLETERASRITIKRKLPKVNRVLAARILEDEEAENETKDADGDDIKKKSKKKKALSSDVFKDERFAAMFEN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
331			75	25	0.996473
332	75	25			0.996473
398		25		75	0.996473
508			14	85	0.993533
623	16		83		0.994512
624		16	83		0.994512
627	83			16	0.994512
698	71		28		1.0
812	20			80	0.995493
814			20	80	0.995493
815		80	20		0.995493
816	80		20		0.995493
928	18		81		0.999994
1105	10		30	60	1.0
1429		20	80		0.995493
1513		10		90	0.90298
1514	10		90		0.90298
1529		12		87	0.992554
1530		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain