SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8341

Length: 2661 nt

UniGene Fasta

>sp_v3.0_unigene8341
ATGGGGATGGGGTTGGGTGCGAGGCGAGGAGAGGGGAAAAGTGTGTGTAAAACTCGGAAGCCCAGCTTGCATTGATTGAAGTTTGAACCCGCGACCTTCCCTCAGTTGCGGTGTTATGATTGTGATAATGATGATGACAGCAGCGGCAGCAGATGAGGAAAAGCAGAGCGAACGTGGGACAGCACAGCCATGGACACAGCCACGCTAGGCCCAACTGTACGTTTTCAAGTTTTAAAGGGGCAAGATAAGAGAGCCTCTAGTGTCTCTGTAGCGAGCAGAAGACGAAGATCGGGAGTTTGAATCGGGATTAGAATGGAAAATAATAATAATAGTAGTGTTATTTCTTCTTCGTCTGAAGAAGAAGGCTTTGAGAGGCACAGTGAAGAGTGCGGGAGCTCAAATTTGAGTGCTGACATCAGCGGCGGCGATGGCAGCAGCAGCTGCGGGTCGCTGAGCTTGAGCTGTAGCCGTGGAGAGACGCCAAGTTATCATGGAGACGCAAGAGGAGAGTGTGTTGCGAGCACCTCAAATGGATCGTCACCCTTGGGATGGCCCATCCAAAGGTCTGCTACCTGTAATTCTCGGCTTTCCAGGGTTCCTTTATCTTCGACTGGAGGCCGGGACACGGTCATATGGGAGGACAGAAAGGAGAAGAAGCTTGAGACCGATCTGTCAGAAATTGATATGATGAAAGAAAGATTTGCAAAGCTATTACTAGGTGAAGATATGTCGGGCGGTGGAAAAGGTGTCTGCAGCGCACTTGCCATATCTAATGCTATTACAAATCTCTCCGCTTCTGTTTTTGGGGAGCTTTGGAGGTTGGAACCGCTGGCTTCACAGAAGAAAGCAATGTGGAACAGAGAAATGCAATGGCTGCTTTCTGTCAGTGATTCGATTGTTGAACTCATACCCACTTGGCAAGAACTTCCACAAGGTGGAAGTTTAGAGGTCATGGTCAGCAGGCCTCGGTCAGATTTATACATCAATCTTCCAGCCTTGAAGAAGCTGGATGCTATGCTGCTGGAAACATTGGATAGTTTCAGTGATACCGAATTTTGGTATGTGGACCGAGGAATTTTGTTGGGAGATGTAAATGATGATGGCTATGTTCCTGTCAGGCCGCCTTCTCAGCGTCAAGAAGATAAATGGTGGTTGCCTACTCCCAAAGTCCCTACAAATGGTCTGTCTAGTGGTGCAAGGAAGCAGTTACAACATCATCGAGAATGTACCAACCAGATCCTTAAGGCAGCTATGGCAATCAACAACCAAATCTTGTCAGAGATGGAGATTCCTTACAGTTTTTTAGAATCTCTTCCAAAGAACGGAAAAGACAGCCTTGGGGATATCATTTACCGCTACATAACAGCAGAACAATTTTCTCCAGATTGTCTTCTAGACTGCCTAGACTTGTCATCTGAACATCACACCTTAGATATTGCAAATCGCATTGAAACTACAATGCACATATGGAAGCAAAAACTTCATTCAAAACACACACATGGAAAAGCTAGCAAACCTAACTCCAAGTCTTCCTGGGGCAAGATGAAAGACTTTGTAGGAGATGTGGAAAGGAGAGAACTTCTTGCTGGCCGAGCAGAAAGTCTTCTACTAGCCTTGAAGCAGAGGTTTCCTGGCTTGCCACAGACCATTTTGGACATGAACAAGATCCAATACAATAAGGATGTTGGCCAATCAATTTTGGAAAGCTATTCAAGGGTGCTGGAGAGTTTGGCATTTAACATCATTGCTCGGATCGATGATCTTATCTTTGTGGATGATATAGCCAAACAGGCTGCTGCCCAACAAAATTCCTCCATTCTTGCTGGATCTGGCCGGGGTGTGATTCCTGCTAATAAAAAAGTTTCTACGCCATTTTCACTTCATTTAACTTCCAGCCCTCCATATTCAACTCCTTTTGCCACTCCCACACCACAATCAAGTCCAGGGAGGGGACCTATTTCCCCTTTTAATGGTCGCAGAGCTAGTGATGTCCAAGACTATTTCTCTCATAGCAGAAGGCTACAACAGTTTCCCGGCAGTGAGAAGAAAGTTGGAGATACCAACCCCAATTCTAATGATCTTGTAAGGATCAGGAAATCTGTTTTGGCAGAATTAGGCAGGGCCTGGTCCTACAATGAAAATCAAGGAAGTAGGAGATACTTAAGGACCCCACGCAGCCCATAACTGATGATGGATTTGGTTATTTGGGGTGCTGGAACGGCGAACTTGACTGCTGTAAAATAGATTCTTGAGGCTTATTCTTCTGTATAGTGGCAAGCAAGAGTATGGACAATGTAAGTTTTTAACTTTCAAGATTGTATAGATTTGGTGAATCAATTTCCTCTTCATACAGTGGGTGCAGTTTGAGAAAACTGTACATTCTCTTTGATAGGGAGTGATTTTTACTCCCCGTACAAGTTTCCACTAATGCAGTTACTGGGCATTCAAATGGATAGAATTGTGCATTACAAGGTCATGCAGCACCATGCTGCAAGTGACTGTATTCTTTGTATATTTGTTTCGGATCGGACCCCTGGATTTTTAACCGAATTCATTCATTGAGAATTTATGTACCCTGTGATTTTATATACCAAAGGAAATTGGCGGGCATAAATGTTATGATCGCAATGATATTTTCATTTGCATTGTTTAGAATTTTAC

Ace file of the UniGene sp_v3.0_unigene8341

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana] sp\|Q93ZY2.2\|ROGF1_ARATH RecName: Full=Rop guanine nucleotide exchange factor 1; Short=RopGEF1; AltName: Full=Kinase partner protein-like; Short=KPP-like emb\|CAB37499.1\| putative protein [Arab	-	-	0.0	56%
FL-Next	sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Rop guanine nucleotide exchange factor, putative	-	-	8.89e-23	-

Source	Gene names
Sma3	AT4g00460; AT4g13240; A_IG005I10.1; At1g01700; At1g31650; At1g31650/F27M3_15; At1g79860; At2g45890; At3g24620; At3g55660; At4g00460; At4g13240; At4g38430; At5g02010; At5g19560; B0103C08-B0602B01.6; F17N18.130; F19K16.18; F19K6.19; F1I16_70; F22I13.200; F2

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apical plasma membrane	GO:0016324	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	Rho guanyl-nucleotide exchange factor activity	GO:0005089	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	-
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	-
Sma3	Erythromycin resistance leader peptide-2	IPR012559	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Haem oxygenase-like, multi-helical	IPR016084	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38430.1	ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 chr4:17986643-17988659 FORWARD LENGTH=548	58%
RefSeq	Arabidopsis thaliana	NP_195556.1	Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002312931.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q93ZY2

Fln msg: your sequence is longer than subject: 624 - 548

Fln protein: MENNNNSSVISSSSEEEGFERHSEECGSSNLSADISGGDGSSSCGSLSLSCSRGETPSYHGDARGECVASTSNGSSPLGWPIQRSATCNSRLSRVPLSSTGGRDTVIWEDRKEKKLETDLSEIDMMKERFAKLLLGEDMSGGGKGVCSALAISNAITNLSASVFGELWRLEPLASQKKAMWNREMQWLLSVSDSIVELIPTWQELPQGGSLEVMVSRPRSDLYINLPALKKLDAMLLETLDSFSDTEFWYVDRGILLGDVNDDGYVPVRPPSQRQEDKWWLPTPKVPTNGLSSGARKQLQHHRECTNQILKAAMAINNQILSEMEIPYSFLESLPKNGKDSLGDIIYRYITAEQFSPDCLLDCLDLSSEHHTLDIANRIETTMHIWKQKLHSKHTHGKASKPNSKSSWGKMKDFVGDVERRELLAGRAESLLLALKQRFPGLPQTILDMNKIQYNKDVGQSILESYSRVLESLAFNIIARIDDLIFVDDIAKQAAAQQNSSILAGSGRGVIPANKKVSTPFSLHLTSSPPYSTPFATPTPQSSPGRGPISPFNGRRASDVQDYFSHSRRLQQFPGSEKKVGDTNPNSNDLVRIRKSVLAELGRAWSYNENQGSRRYLRTPRSP*

Protein Length: 625

Fln nts: ATGGGGATGGGGTTGGGTGCGAGGCGAGGAGAGGGGAAAAGTGTGTGTAAAACTCGGAAGCCCAGCTTGCATTGATTGAAGTTTGAACCCGCGACCTTCCCTCAGTTGCGGTGTTATGATTGTGATAATGATGATGACAGCAGCGGCAGCAGATGAGGAAAAGCAGAGCGAACGTGGGACAGCACAGCCATGGACACAGCCACGCTAGGCCCAACTGTACGTTTTCAAGTTTTAAAGGGGCAAGATAAGAGAGCCTCTAGTGTCTCTGTAGCGAGCAGAAGACGAAGATCGGGAGTTTGAATCGGGATTAGA_-_ATGGAAAATAATAATAATAGTAGTGTTATTTCTTCTTCGTCTGAAGAAGAAGGCTTTGAGAGGCACAGTGAAGAGTGCGGGAGCTCAAATTTGAGTGCTGACATCAGCGGCGGCGATGGCAGCAGCAGCTGCGGGTCGCTGAGCTTGAGCTGTAGCCGTGGAGAGACGCCAAGTTATCATGGAGACGCAAGAGGAGAGTGTGTTGCGAGCACCTCAAATGGATCGTCACCCTTGGGATGGCCCATCCAAAGGTCTGCTACCTGTAATTCTCGGCTTTCCAGGGTTCCTTTATCTTCGACTGGAGGCCGGGACACGGTCATATGGGAGGACAGAAAGGAGAAGAAGCTTGAGACCGATCTGTCAGAAATTGATATGATGAAAGAAAGATTTGCAAAGCTATTACTAGGTGAAGATATGTCGGGCGGTGGAAAAGGTGTCTGCAGCGCACTTGCCATATCTAATGCTATTACAAATCTCTCCGCTTCTGTTTTTGGGGAGCTTTGGAGGTTGGAACCGCTGGCTTCACAGAAGAAAGCAATGTGGAACAGAGAAATGCAATGGCTGCTTTCTGTCAGTGATTCGATTGTTGAACTCATACCCACTTGGCAAGAACTTCCACAAGGTGGAAGTTTAGAGGTCATGGTCAGCAGGCCTCGGTCAGATTTATACATCAATCTTCCAGCCTTGAAGAAGCTGGATGCTATGCTGCTGGAAACATTGGATAGTTTCAGTGATACCGAATTTTGGTATGTGGACCGAGGAATTTTGTTGGGAGATGTAAATGATGATGGCTATGTTCCTGTCAGGCCGCCTTCTCAGCGTCAAGAAGATAAATGGTGGTTGCCTACTCCCAAAGTCCCTACAAATGGTCTGTCTAGTGGTGCAAGGAAGCAGTTACAACATCATCGAGAATGTACCAACCAGATCCTTAAGGCAGCTATGGCAATCAACAACCAAATCTTGTCAGAGATGGAGATTCCTTACAGTTTTTTAGAATCTCTTCCAAAGAACGGAAAAGACAGCCTTGGGGATATCATTTACCGCTACATAACAGCAGAACAATTTTCTCCAGATTGTCTTCTAGACTGCCTAGACTTGTCATCTGAACATCACACCTTAGATATTGCAAATCGCATTGAAACTACAATGCACATATGGAAGCAAAAACTTCATTCAAAACACACACATGGAAAAGCTAGCAAACCTAACTCCAAGTCTTCCTGGGGCAAGATGAAAGACTTTGTAGGAGATGTGGAAAGGAGAGAACTTCTTGCTGGCCGAGCAGAAAGTCTTCTACTAGCCTTGAAGCAGAGGTTTCCTGGCTTGCCACAGACCATTTTGGACATGAACAAGATCCAATACAATAAGGATGTTGGCCAATCAATTTTGGAAAGCTATTCAAGGGTGCTGGAGAGTTTGGCATTTAACATCATTGCTCGGATCGATGATCTTATCTTTGTGGATGATATAGCCAAACAGGCTGCTGCCCAACAAAATTCCTCCATTCTTGCTGGATCTGGCCGGGGTGTGATTCCTGCTAATAAAAAAGTTTCTACGCCATTTTCACTTCATTTAACTTCCAGCCCTCCATATTCAACTCCTTTTGCCACTCCCACACCACAATCAAGTCCAGGGAGGGGACCTATTTCCCCTTTTAATGGTCGCAGAGCTAGTGATGTCCAAGACTATTTCTCTCATAGCAGAAGGCTACAACAGTTTCCCGGCAGTGAGAAGAAAGTTGGAGATACCAACCCCAATTCTAATGATCTTGTAAGGATCAGGAAATCTGTTTTGGCAGAATTAGGCAGGGCCTGGTCCTACAATGAAAATCAAGGAAGTAGGAGATACTTAAGGACCCCACGCAGCCCATAA___CTGATGATGGATTTGGTTATTTGGGGTGCTGGAACGGCGAACTTGACTGCTGTAAAATAGATTCTTGAGGCTTATTCTTCTGTATAGTGGCAAGCAAGAGTATGGACAATGTAAGTTTTTAACTTTCAAGATTGTATAGATTTGGTGAATCAATTTCCTCTTCATACAGTGGGTGCAGTTTGAGAAAACTGTACATTCTCTTTGATAGGGAGTGATTTTTACTCCCCGTACAAGTTTCCACTAATGCAGTTACTGGGCATTCAAATGGATAGAATTGTGCATTACAAGGTCATGCAGCACCATGCTGCAAGTGACTGTATTCTTTGTATATTTGTTTCGGATCGGACCCCTGGATTTTTAACCGAATTCATTCATTGAGAATTTATGTACCCTGTGATTTTATATACCAAAGGAAATTGGCGGGCATAAATGTTATGATCGCAATGATATTTTCATTTGCATTGTTTAGAATTTTAC

Fln Alignment:

Contig8341___VPLSSTGGRDTVIWEDRKEKKLETDLSEIDMMKERFAKLLLGEDMSGGGKGVCSALAISNAITNLSASVFGELWRLEPLASQKKAMWNREMQWLLSVSDSIVELIPTWQELPQGGSLEVMVSRPRSDLYINLPALKKLDAMLLETLDSFSDTEFWYVDRGILLGDVNDDGYVPVRPPSQRQEDKWWLPTPKVPTNGLSSGARKQLQHHRECTNQILKAAMAINNQILSEMEIPYSFLESLPKNGKDSLGDIIYRYITAEQFSPXXXXXXXXXSSEHHTLDIANRIETTMHIWKQKLHSKHTHGKASKPNSKSSWGKMKDFVGDVERRELLAGRAESLLLALKQRFPGLPQTILDMNKIQYNKDVGQSILESYSRVLESLAFNIIARIDDLIFVDDIAKQAAAQQNSSILAGSGRGVIPANKKVSTPFSLHLTSSPPYSTPFATPTPQSSPGRGPISPFNGRRASDVQDYFSHSRRLQQFPGSEKKVGDTNPNSNDLVRIRKSVLAELGRAWSYNENQGSRR
Q93ZY2______________VMLPVIGGKD-VVWDD---KQPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLDAFSDTEFWYTDRGIVLGDCDKDSY--NSPASVRQEDKWWLPCPKVPPNGLSEEARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQK--NGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDD-AMRRSISVTESLSLFSINGLNP-----QKAFSV---QSSPHGSPFATPA-LSVASRSP------RRAPPLYSVKRNGTR------------------------EKGIVGETEKAWSYAGNLSSRR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
468	14			85	0.993533
470			85	14	0.993533
471		85	14		0.993533
472		85		14	0.993533
676	16			83	0.994512
679			83	16	0.994512
680	83			16	0.994512
720	75			25	0.996473
795	66	33			0.997452
1033	33			66	0.997452
1039	66		33		0.997452
2082		33		66	1.0
2265		4		95	0.999988
2376		95		4	0.996599
2395	7		92		0.999999
2420	86	13			1.0
2641	14	85			0.993533
2642	75	25			0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
319	331	AAT AAT AAT AAT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain