SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene8336

Length: 851 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene8336

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-amylase 2 [Arabidopsis thaliana] sp\|O65258.2\|BAM2_ARATH RecName: Full=Beta-amylase 2, chloroplastic; AltName: Full=1,4-alpha-D-glucan maltohydrolase; AltName: Full=Beta-amylase 9; Flags: Precursor gb\|AEE81889.1\| beta-amylase 2 [Arabidopsis thaliana]	-	-	9.0e-26	73%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Putative beta-amylase	-	-	3.449e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	1.477e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.477e-14	%
Sma3	Metabolic pathways	01100		1.477e-14	%

Source	Gene names
Sma3	AT4G15210; AT4g00490; At2g32290; At2g45880; At4g15210; At5g45300; At5g45300/K9E15_8; BMY1; F6N23.1; GSVIVT00001210001; GSVIVT00026861001; GSVIVT00026862001; OJ1003_C09.20; Os02g0129600; Os09g0569200; OsI_05709; OsI_32458; OsJ_05236; OsJ_30408; POPTRDRAFT_

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00490.1	BAM2, BMY9 beta-amylase 2 chr4:222422-224862 FORWARD LENGTH=542	1.0e-30	73%
RefSeq	Arabidopsis thaliana	NP_191958.3	beta-amylase 2 [Arabidopsis thaliana]	2.0e-30	73%
RefSeq	Populus trichocarpa	XP_002320794.1	predicted protein, partial [Populus trichocarpa]	2.0e-29	73%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
62	50	50			1.0
83		88		11	0.923564
84		88	11		0.923564
85	88		11		0.923564
87			11	88	0.923564
104		11		88	0.923564
124			57	42	1.0
190	42			57	1.0
204	57	42			1.0
206		42		57	1.0
218		42	57		1.0
238		57	42		1.0
278		14		71	0.984337
291		87	12		0.992554
292			12	87	0.992554
313			12	87	0.992554
314			12	87	0.992554
315		85	14		0.993533
316		85	14		0.993533
412		20	80		0.995493
414		80		20	0.995493
415	80	20			0.995493
416			20	80	0.995493
419	20		80		0.995493
420		20	80		0.995493
423		80		20	0.995493
426		20		80	0.995493
428	80		20		0.995493
429	80			20	0.995493
430		20	80		0.995493
766		11		88	0.923564
794	87		12		0.992554
801		14	85		0.993533
802	16		83		0.994512
804			83	16	0.994512
811		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain